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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0448600 |
| Transcript ID | LotjaGi4g1v0448600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G32230.1 proteinaceous RNase P 1; Swiss-Prot: sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7L4S6|K7L4S6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0448600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82098493..82103245) extracted from Lotus japonicus Gifu genome v1.2.
CATTAATATTGCATGTAATGTTATCAATGACATTAGAATATTTAACAAAAGTCAATTGTAATTTTTTTTTCCGAAAATAA CTACTTTATTAATTTGACATTTAATGGTTATTAATGATATTAGAATAATTAATAAAAGTCAATTGTGATTTTTCTACCAT AAAGATGTATGTTGATAAAGTCTTTTTTTATGCTATTGTTATTTTTTATATAAAAAAATTGAATGTAATATCTTACGTAC AAAATAATATCATATATGTCATAAAAAATTGATATCTAATAGTTTTAAATGATTGATTTGGAAATTAACTAAAAAAATTT ATATTTTATGTTTTCGTATATATACTTCTTGAAGATTAAAATGAGTTTGGAATATTGATTTAAAGTATAACAAATTAGAA AAAATAAAGGAATTAAATGTAACTAGGATTAGAAAAAAAAACTTAAATAAGTGATATACATATTTAAAAAAGAAAAACAA AAGAGGAAATATGAAAATGTTTGATATATATCGATAAAGTACTCTCATTTTATACGTGCATGACACAAGATCAATACTAG TAATATATAATATAGATCTTAAAAAAAAAATATAATATAGGATATAGTATATGATTGATTTTACGTTTTATTTTCTGAAC AACTAAGAATTTTACGTTTTTTAAAATTAAAGGAGTTCATATTTTACAATTTTTCAAACAGACAATTTTATGAACAATTA AAAAAAAAAACAAATAATTTCATGAACAATAATATCTCATTTCTGTTAACATAAGTTCCATAAGAAAGGACACTTTGGTC ATTTGAAGTCACTAGGTTGCATCTTATAAAAGCCTATCAACATTGGAGAGTTTGATGGCCAGCCACATATGGCCACCTTC ACCCTCAGCTTCAACACCCTGCAACAATCTCTCCCCTTCTCTCATTCTCTCAAACCAAAGCTTTGTCATAATCACTATGC ACTCACTCCTCATGCTTCTGTTTATGGATACAAGAGGGGTTCTTTGGAATCAAAAGTTAGTAGTATCAGTAGTGACAGAG TTAGTGAGAGAGTGAAGGAGAAGAAGAAGGACAATGAAATTGTGGTGTATAAGAAGAATAAGGACACCCCACAAATGAAA TTGAAGATTGCTTTCGATATGTGTTCCAAAAGAGGAGACATCATGGAAGCTTTGTCCTTGTATGATGCAGCAAGGTCAGA GGGTCTGAAATTGCAGCAGCATCATTATACTGTTTTGCTGTATCTTTGTTCTTCTGCTGCTGTTGGTGTTGTTCAACCAG CTAAAAGTGGAAGTGGTGCTAGAACTTTGAATGCACAAGTTGAACTTGTGAATCATGAGGATAATGATAATTCAGTTTCG GTTGATAGAAATGAGAGAGATTTTAGTAATGGGATTTTGGTGAGTGGGGATGTCAAGAAATATGCACTGAAGAGAGGACT TGAGGTGTATGAGAGTATGTCTCAGAGTAAAGTCAAAATGAATGAAGCTTCATTGACATCTGTGGCTAGAATGGCTATGG CAATAGGTGATGGTGACATGGCTTTTGAGATGGTGAAGCAAATGAAGAGTTTAGGGATTAATCCCAGGTTAAGGTCTTAT GGTCCTGCTTTATCTACTTTTTGCAATAATGGAGAAATAGATAAAGCATTTGCTGTTGAAAAGCACATGCTGGAACATGG TGTGTGCCCTGAAGAGCCTGAGTTGGAGGCACTCTTAAGAGTAAGCAATAGCATAAGAGCTGGAAAGGGTGATAAGGTCT ATTATGTGTTGCAAAAACTAAGGACTAGTGTAAGGAAGGTTTCACCTTCTACTGCACAATTGATTATTGATTGGTTTAAG AGCACACAGGCTTCAAGAGTGGGGAAGAGAAAATGGGATAAAAAATTGATAATGGAAGCAATAGAAAATCATGGTGGTGG CTGGCATGGGCAAGGTTTGTTGGGAAAGGGAAAATGGAGAGTTGTTCACACAGCCATCGGAAATGATGGGATTTGTAAAT GCTGTGGGGTGCACTTGGCCACTATTGATCTTGATCCTATTGAAACTGAGAATTTTGCCAAGTCAGTTGCATCCATTGCT ATAGAAAGAGAGAAAAAGTCAGACTTTGAGAAATTCCAAGTAAGTGCATGTTTGGAAATCTTTCTACTATTGATTTTAAA GTCAAAATCAATTATGTGAGGAGCTTCTGGGTTCCAGAATTGATTATAAGGAAATGAAAACTGGTCCAAACATGCTATAA GAAACTTGAATAATGTGCATTAGTTTTGATCTCATTAGTCATTACAGATTGATGAAGTAAGTTATGTGAAATTATGAAAT GCAGAAATGGCTTGACTACTATGGACCTTTTGAAGCCGTGGTAGATGGTGCAAATGTAGCTCTTTTTGGCCAAGGGAGAT TCATACCATCCAAGGTACTTCACTGAATGTGGAAGATACTCTTTTTTCTTCCTTTTTTTGTCCTGCTCCTGCATGTTTTT CTTCTTGTGGTTGTTGACATCTAAGGTGAAATCAATAGATTAATGCTGTTGTCAATGGAATACGCCAAAAGCTTCCTTCA AAGAAGTTTCCTCTTATTATTTTGCATAATAGGCGTATCAAAGGAGACAAAGGGAGTGAAGCAATTAACGGGGCTTTAAT TGATAGGTGGAACAATGCTGATGCACTCTATGCAACGCCTACCGGATCAAATGATGATTGGTAAGAACAAAATGGGATAA TATAGTGTTAACAACGTATTCTTTGTTAATTTTTACTGATTATGCATATCTGCTTCATTTACTAACCTGTGCTTCAGGTA CTGGTTATATGTAGCTATAAAATTTAAATGCTTAATTATCACCAATGATGAGATGAGAGATCATCTGTTTCAACTTCTGG GAAATGACTTCTTCCCCAAGTGGAAAGAAAGGCATCAGGTGAGCAAATATCCTGGCAAAGAAAAATTTCTTATCGCGTCT TTATTCTTATTGGCATGCTAGCTCACCTAGCTGTTTATATTTGATGAAATAAGGTTTGAGTTTGGGTAAACAGCTTAAAT AAGCGCTTATTCATAAGCTAGTTTGAGAACCTTATTGAAATAAGTTATAGGTAAGCATAAGCTCTTATTTATAAGCTAAT CTGAAAAAATTATAAAAATAAGCTCAAAGCAGGTTATTGGTAAGCCATAAGCTATTGACATAAGCTTCTTCCAAGTTCCA CTTGCATTAGTGCTTATGCTATAAGATAAGCTCAAACAAGCTCTTCCAAACAAGGCTTAATTATATATAATGTATAGTTT CATTTTCCTTTCTTTGACTACAATTTACAAATAGGCTTGTCTTAACACTGGAATCACTATTTTTTCCAAATTTTAGGTAC ACTTCAGTATCTCTGATACTGGTCCAGAGTTCTACATGCCCCCTCCATGTTCTGTTGTAATTCAGGTAAAAGACTTGTTA CTGCAAAGTTCTTGTACTGTTTCAACAATGTTGGAACATGACACAAATTAAATTATATGTTATCCATAAATGTGAAGTTG AAACCATGGCAATTGTGGTAGCAGGAATCAGAGGAAGGCCACTGGCATATTCCAATCGAAACAGAACTTAGCAATGAATC AGAAAGAAGATGGTTGTGTATTACCCGTGCTAAGTCAGATATCGTCAGTGAAGAATCTTCAACAACATCTAAAGGTAATT ACTGGCACATTATACCTGCTTCACATTTACATGGCTGCTTTTAACACTATATAATGGTCTTCAATACTTTTATCTCAAAA GAATTGCTAATATCACATCATGCCAACTGAGATTTCTAACCCTTCCCCCCTTTCCCTTCCTTTCATTAGACTATAAACCC CTGCAAAATGGGGAGTGTGCCAGACCAGTTACTAGAAATGCATCTGCAAAGGAGTTACAACATCAGAATCTTGTCAACCA CAGAGAAATGAAGGAAACACCTCAAGAATTTTACAAGAATATTAGAGATATTTGTTTAGCACCGGTGTCCTCAGATAATA ACTCGATATTAGCTGAAATTGAGGCTGCAGAGTTGACTGGTGGTTGTACCATTGATTTTCAGATATGAAGCTCCCCCTGT CATGTAGATTCTCTTGAGCTATATCTTGGAAACCTATTGGAGTGCTCAGAATCAACAATGGAGGACTCTCAATTGTCGTC CCATATGACTGACCCGAAGCTCTGATACCATTCTGTAAGATGAGAAGTTGGATGCATTTGCACTCTGAAAGATAATTTAC TGGAGATTGCAAAACTTTTCAACTCACGCTCTCGGCATGACCTCACTTTGTGTTGATTCTTTTCTTCTCTCAGGGGTTAT ATCACTTCTCGGTCTTGATTGCCTAATGCTGAAGGGGATGTGTTTACAATTTCAAAATTTTATACAAATATCAATAAATC TATGGAGATTGATGACATGATGATAAGCGTAGTGTATTTTAAATTTTTTAGATGCTGCTAAACTCTTCACCAATGTGAGA GGTGTGGATCATGTGGTTAAATATTGTATGACATGCCATGAGTGTATAGTTACTTAAAAAAGAAGAAATAGAAAGGTAAG AGATAGAAAATGAGAAATGGCATCAAAATTAATATTCATAATCCGGATCATATATACCGGAACACGATGCAGTGAACTTG ATGTAAAGTGTACAAGTAAAAGTATATTTGTAACTGGTCCAATGTATTATGATTAGGATATATTTTAAATAAATCAAACT AAGGTGAGAGTGCACTCTTATTCATGTGTTTCC
CDS sequence (LotjaGi4g1v0448600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCTTCACCCTCAGCTTCAACACCCTGCAACAATCTCTCCCCTTCTCTCATTCTCTCAAACCAAAGCTTTGTCA TAATCACTATGCACTCACTCCTCATGCTTCTGTTTATGGATACAAGAGGGGTTCTTTGGAATCAAAAGTTAGTAGTATCA GTAGTGACAGAGTTAGTGAGAGAGTGAAGGAGAAGAAGAAGGACAATGAAATTGTGGTGTATAAGAAGAATAAGGACACC CCACAAATGAAATTGAAGATTGCTTTCGATATGTGTTCCAAAAGAGGAGACATCATGGAAGCTTTGTCCTTGTATGATGC AGCAAGGTCAGAGGGTCTGAAATTGCAGCAGCATCATTATACTGTTTTGCTGTATCTTTGTTCTTCTGCTGCTGTTGGTG TTGTTCAACCAGCTAAAAGTGGAAGTGGTGCTAGAACTTTGAATGCACAAGTTGAACTTGTGAATCATGAGGATAATGAT AATTCAGTTTCGGTTGATAGAAATGAGAGAGATTTTAGTAATGGGATTTTGGTGAGTGGGGATGTCAAGAAATATGCACT GAAGAGAGGACTTGAGGTGTATGAGAGTATGTCTCAGAGTAAAGTCAAAATGAATGAAGCTTCATTGACATCTGTGGCTA GAATGGCTATGGCAATAGGTGATGGTGACATGGCTTTTGAGATGGTGAAGCAAATGAAGAGTTTAGGGATTAATCCCAGG TTAAGGTCTTATGGTCCTGCTTTATCTACTTTTTGCAATAATGGAGAAATAGATAAAGCATTTGCTGTTGAAAAGCACAT GCTGGAACATGGTGTGTGCCCTGAAGAGCCTGAGTTGGAGGCACTCTTAAGAGTAAGCAATAGCATAAGAGCTGGAAAGG GTGATAAGGTCTATTATGTGTTGCAAAAACTAAGGACTAGTGTAAGGAAGGTTTCACCTTCTACTGCACAATTGATTATT GATTGGTTTAAGAGCACACAGGCTTCAAGAGTGGGGAAGAGAAAATGGGATAAAAAATTGATAATGGAAGCAATAGAAAA TCATGGTGGTGGCTGGCATGGGCAAGGTTTGTTGGGAAAGGGAAAATGGAGAGTTGTTCACACAGCCATCGGAAATGATG GGATTTGTAAATGCTGTGGGGTGCACTTGGCCACTATTGATCTTGATCCTATTGAAACTGAGAATTTTGCCAAGTCAGTT GCATCCATTGCTATAGAAAGAGAGAAAAAGTCAGACTTTGAGAAATTCCAAAAATGGCTTGACTACTATGGACCTTTTGA AGCCGTGGTAGATGGTGCAAATGTAGCTCTTTTTGGCCAAGGGAGATTCATACCATCCAAGATTAATGCTGTTGTCAATG GAATACGCCAAAAGCTTCCTTCAAAGAAGTTTCCTCTTATTATTTTGCATAATAGGCGTATCAAAGGAGACAAAGGGAGT GAAGCAATTAACGGGGCTTTAATTGATAGGTGGAACAATGCTGATGCACTCTATGCAACGCCTACCGGATCAAATGATGA TTGGTACTGGTTATATGTAGCTATAAAATTTAAATGCTTAATTATCACCAATGATGAGATGAGAGATCATCTGTTTCAAC TTCTGGGAAATGACTTCTTCCCCAAGTGGAAAGAAAGGCATCAGGTACACTTCAGTATCTCTGATACTGGTCCAGAGTTC TACATGCCCCCTCCATGTTCTGTTGTAATTCAGGAATCAGAGGAAGGCCACTGGCATATTCCAATCGAAACAGAACTTAG CAATGAATCAGAAAGAAGATGGTTGTGTATTACCCGTGCTAAGTCAGATATCGTCAGTGAAGAATCTTCAACAACATCTA AAGACTATAAACCCCTGCAAAATGGGGAGTGTGCCAGACCAGTTACTAGAAATGCATCTGCAAAGGAGTTACAACATCAG AATCTTGTCAACCACAGAGAAATGAAGGAAACACCTCAAGAATTTTACAAGAATATTAGAGATATTTGTTTAGCACCGGT GTCCTCAGATAATAACTCGATATTAGCTGAAATTGAGGCTGCAGAGTTGACTGGTGGTTGTACCATTGATTTTCAGATAT GA
Protein sequence (LotjaGi4g1v0448600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATFTLSFNTLQQSLPFSHSLKPKLCHNHYALTPHASVYGYKRGSLESKVSSISSDRVSERVKEKKKDNEIVVYKKNKDT PQMKLKIAFDMCSKRGDIMEALSLYDAARSEGLKLQQHHYTVLLYLCSSAAVGVVQPAKSGSGARTLNAQVELVNHEDND NSVSVDRNERDFSNGILVSGDVKKYALKRGLEVYESMSQSKVKMNEASLTSVARMAMAIGDGDMAFEMVKQMKSLGINPR LRSYGPALSTFCNNGEIDKAFAVEKHMLEHGVCPEEPELEALLRVSNSIRAGKGDKVYYVLQKLRTSVRKVSPSTAQLII DWFKSTQASRVGKRKWDKKLIMEAIENHGGGWHGQGLLGKGKWRVVHTAIGNDGICKCCGVHLATIDLDPIETENFAKSV ASIAIEREKKSDFEKFQKWLDYYGPFEAVVDGANVALFGQGRFIPSKINAVVNGIRQKLPSKKFPLIILHNRRIKGDKGS EAINGALIDRWNNADALYATPTGSNDDWYWLYVAIKFKCLIITNDEMRDHLFQLLGNDFFPKWKERHQVHFSISDTGPEF YMPPPCSVVIQESEEGHWHIPIETELSNESERRWLCITRAKSDIVSEESSTTSKDYKPLQNGECARPVTRNASAKELQHQ NLVNHREMKETPQEFYKNIRDICLAPVSSDNNSILAEIEAAELTGGCTIDFQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 52 | 149 | 98 | 0.0 | – | |
| PANTHER | 52 | 149 | 98 | 0.0 | – | |
| Pfam | 75 | 134 | 60 | 1.3E-16 | ||
| ProSiteProfiles | 81 | 115 | 35 | 6.325 | ||
| PANTHER | 170 | 685 | 516 | 0.0 | – | |
| PANTHER | 170 | 685 | 516 | 0.0 | – | |
| ProSiteProfiles | 170 | 204 | 35 | 5.108 | ||
| Gene3D | 180 | 599 | 420 | 5.3E-200 | ||
| Pfam | 182 | 329 | 148 | 1.3E-54 | ||
| ProSiteProfiles | 205 | 239 | 35 | 8.1 | ||
| ProSiteProfiles | 240 | 274 | 35 | 9.372 | ||
| Pfam | 370 | 596 | 227 | 1.8E-71 | ||
| Gene3D | 388 | 562 | 175 | 5.3E-200 | – | |
| CDD | 428 | 551 | 124 | 4.4521E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0448600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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