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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0448900 |
| Transcript ID | LotjaGi4g1v0448900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal peptidase I family protein; TAIR: AT3G24590.1 plastidic type i signal peptidase 1; Swiss-Prot: sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase; TrEMBL-Plants: tr|A0A151T3K0|A0A151T3K0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0448900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82122106..82125240) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACTCAAGTTAAGTAAGCTGTCAAAAAAACCTCAAGTTAAGTAAATTCACACTTGTTTCTTAATCATTTTGTAATC CTAAAAATCAACACAAATTAAATTAGCTAGAAATGAGAAGCTAGAAAGAAAAAAGACAAGACATTGAAAAACAGAAGAAC AAAGATTATTGTTATCTCAAAACTCGAGCTCAAAGACGAAGACATGCCATCCCTCTCTATCTTCCCATCATCACTGCCAT CGCTTCAAAACCCTAACTTGGACCATGCCCACCTCTTCAAATCCATCAACCTCCGTTTAAATTCACCACCACACTGTCAC CGCCACTTTCCGCACCTCAATCTTCACCGGAGAACCCACCTCAAAGCTTTCAGGGATTCCGGCAAAGATACAAAGACGGT GTTGGACTCTGGTGGAGGAGGCGGAGACGGCGGCGGCGATGACGACGACGGCGGGGGTGACCGGGATGTGGAGAAAAAAG ATGGGTCTTCGGGGCCTTTGCCAGAGTGGTTGAATTTCGATTCTAATGACGCAAAAACGGTGTTTGCGGCTCTGGCGATT TCGCTTGCGTTTCGTACGTTCGTGGCTGAGCCGAGGTACATTCCTTCGTTGTCAATGTATCCTACATTTGATGTTGGAGA TCGACTTGTTGCTGAGAAGGTAGTGATTTTGTTCCTGAGCTTTTAATTTCAGGAGGGTCTCAATGAACTTTTAACTAGCT TGGATTAACAAAAAAAATTCATGAAATATTTAAGAATCCTGTGTTTGTGTGAGTATTTGTGATTGGAATGTTGATTGCAA TGAATATTTAAGGTTCCAAGTTTACAGTGTATTATAGAATTTAGTTTATAGGCTCATTCTGCATAATTTGAAGCAGATTA ATATCTGGAGTAATTCATGAGAATAGCTTGATGTTAAGGTTGACTACACTACAAAAAAGCATGTGAAACTGTAGGCTGTG ATACTCATGAGACTTGACATAAGCATTCAACTATACTTAATTTTATGACACATCTCAATGTAAAGATACACTTTCATGTT TTCAGGTATCATACTATTTTAGAAAGCCTTGTGCAAATGACATAGTGATATTCAAAAGTCCTCCAGTCCTTCAAGAAGTT GGATATACTGATGATGATGTTTTCATAAAACGTATAGTTGCAAAGGAAGGTGATATCGTGGAGGTAGGATCTTTGGAGAT GAACATTCACACTCTTATCTCGTGATTGTCTTTTCATTGTTTGTGCAATTCCACGTTGAGCTATGTTGCTGTGCATTGTT CTATTTGATGATAACAATGATTTGTGATGTTTCATTTATGACCTTGTCATGTCTTTCTATTTGTCCATGGCTTCATTTTC CCTCTTGCTTGTTCTTCATTTTTAGGAGGGGGAGGGGGGATGTTTGTTCCTTTCTGTCTGTTCCAAAGTTTGGGTAGTTG GCTAGTGGCCCTAGTTAGCATGAAGATTATCTATTGCTAGCATGTTTGGATCAACTTATTTTGCTTCAATCAATTCTGGC ACCAAGAAGCTACTCACATAATCTGCTCCCCAAAATTGATTTTAGCTTTAGAATCAATTGTAGGAAGATTTCCAAATATG TAGCTTCAATCAGATTCTTGCTGTTTTTTATTCGGCGTATTGATATCCTAATGTTAGCAAATGGTTTATTTGCAGGTTCG TGATGGGCATCTTATAGTTAATGGGGTTGAGAGGAATGAAAAGTTCATCCTTGAACCACCTTCTTATGAGATGAAACCCA CAGTAAGTTATGCCCTCTTTTATTATGTCTCTGTTTTCCTCCCTTCTTTCTCGGTTGGTCCTTTAAGCAACTGCTTAACT TTGACGAACCAACAACTGATTGTCAAGATAATTTGGGCTAGGCAGTAGGGATTCAAGTGTTGTTCATCCTGTTGCGGTTA TCTTGAACTACTTGGGTTCTAGGCATGACCTTAGGAAAGTAAACAGAAATTATAGACATTCTGCACCAGAGCAGTGTTTT TGCTTTGAGCTTAGATAAATGTTGCCCTTGTCCAAAGCTTTATGTTGATTTTATATTCGGTTTAATCTTGTGCCTCGCAG CGTGTACCAGAGAACTATGTTTTTGTGATGGGAGACAACCGCAATAACAGCTATGATTCCCATGTGTGGTAATGTGTTGA AGCATCATCAAAATTATCCAGATGCATTATCATAAGTGTTCTTATTATGTTCTTACTTGTTAAATGTAATTTTTTCAGGG GTCCCCTCCCAGCCAAGAACATAATAGGCAGATCAGTGTTCCGCTATTGGCCACCAAATAGAATTGCCGACACAATTTCT AAGGAAGGTTGTGCTGTTGATACAAAGCAAGAGACTGAGGAGAGTACTACTGTACCTTCTCAATAAGCACTTCTCGGCAA CTGTTTGTTGTGAATTGTATGATTTTTTTGTAGTTCCATTATGTTATTCATTTTATGTCAATTTTTAGAAAAGAAATAGG AAGCTTGTTTAGTTTGGAACAACATTTTTAAGTTCCTAAATATTACGGGTTTTCGCATACTCAATTTCTCACCCTTCACA GCTTAACTTGTGTATTGAGAATTCAGATGTAAAGTAACACAACTGATTGTTTCCGAAAAACAAAATCCACCACAATTTTT TTCTGATAAGTTATGTATGGATTTAACTTGCTTTAAGGAATATACAATACTCTTTTTGTAATTGATGGCACCACCCATTC GGAAAATGGTTGCATGTCTCTCCCAACAAATAATACCACCATATTATGTTTTGTTTCTCTATTAAAGGCGTGAGCTTCAT CGTGTGTTGCTTGCAGATGGAGCATGCTCCGCCACATTTTGAGTAGGTCCGCCAATCTGAGTAGATTTGGAGATTGAGGA TGAATTAGGTCTGAAATAGATCTCCGATGAGGAATTTTTTAAGAAGCAAATCTGGGTAAATAATCACTACAAACGTAAAG TCTAGAAAGGAGAGGAAGAAGGCGAGACAGATGACGATGAATGAAGAGGATGGCATTTTGAACTGCTCCGGCAAGGGTGA TTCTTGGTGGACGATCTTTCTTCAATTTGGTCTCCCAATTTCAATTCTAATCAATGATATTTTTCTTTCATTCTATAATT TTTTTCTCAATGATT
CDS sequence (LotjaGi4g1v0448900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATCCCTCTCTATCTTCCCATCATCACTGCCATCGCTTCAAAACCCTAACTTGGACCATGCCCACCTCTTCAAATC CATCAACCTCCGTTTAAATTCACCACCACACTGTCACCGCCACTTTCCGCACCTCAATCTTCACCGGAGAACCCACCTCA AAGCTTTCAGGGATTCCGGCAAAGATACAAAGACGGTGTTGGACTCTGGTGGAGGAGGCGGAGACGGCGGCGGCGATGAC GACGACGGCGGGGGTGACCGGGATGTGGAGAAAAAAGATGGGTCTTCGGGGCCTTTGCCAGAGTGGTTGAATTTCGATTC TAATGACGCAAAAACGGTGTTTGCGGCTCTGGCGATTTCGCTTGCGTTTCGTACGTTCGTGGCTGAGCCGAGGTACATTC CTTCGTTGTCAATGTATCCTACATTTGATGTTGGAGATCGACTTGTTGCTGAGAAGGTATCATACTATTTTAGAAAGCCT TGTGCAAATGACATAGTGATATTCAAAAGTCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAA ACGTATAGTTGCAAAGGAAGGTGATATCGTGGAGGTTCGTGATGGGCATCTTATAGTTAATGGGGTTGAGAGGAATGAAA AGTTCATCCTTGAACCACCTTCTTATGAGATGAAACCCACACGTGTACCAGAGAACTATGTTTTTGTGATGGGAGACAAC CGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCCTCCCAGCCAAGAACATAATAGGCAGATCAGTGTTCCGCTATTG GCCACCAAATAGAATTGCCGACACAATTTCTAAGGAAGGTTGTGCTGTTGATACAAAGCAAGAGACTGAGGAGAGTACTA CTGTACCTTCTCAATAA
Protein sequence (LotjaGi4g1v0448900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSLSIFPSSLPSLQNPNLDHAHLFKSINLRLNSPPHCHRHFPHLNLHRRTHLKAFRDSGKDTKTVLDSGGGGGDGGGDD DDGGGDRDVEKKDGSSGPLPEWLNFDSNDAKTVFAALAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKP CANDIVIFKSPPVLQEVGYTDDDVFIKRIVAKEGDIVEVRDGHLIVNGVERNEKFILEPPSYEMKPTRVPENYVFVMGDN RNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIADTISKEGCAVDTKQETEESTTVPSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 46 | 291 | 246 | 1.2E-130 | – | |
| PANTHER | 46 | 291 | 246 | 1.2E-130 | – | |
| MobiDBLite | 58 | 102 | 45 | - | – | |
| TIGRFAM | 111 | 269 | 159 | 1.7E-39 | ||
| Gene3D | 123 | 215 | 93 | 2.9E-16 | – | |
| SUPERFAMILY | 124 | 272 | 149 | 3.49E-48 | ||
| PRINTS | 126 | 142 | 17 | 2.2E-17 | ||
| CDD | 129 | 261 | 133 | 2.36377E-25 | – | |
| ProSitePatterns | 135 | 142 | 8 | - | ||
| Pfam | 162 | 262 | 101 | 1.4E-12 | ||
| PRINTS | 185 | 197 | 13 | 2.2E-17 | ||
| Gene3D | 222 | 283 | 62 | 1.4E-13 | – | |
| PRINTS | 229 | 248 | 20 | 2.2E-17 | ||
| ProSitePatterns | 234 | 247 | 14 | - | ||
| MobiDBLite | 278 | 298 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Serine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0448900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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