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LotjaGi4g1v0449800.1

Overview

Field Value
Gene ID LotjaGi4g1v0449800
Transcript ID LotjaGi4g1v0449800.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P29687|RAB5_TOBAC Ras-related protein Rab5; TrEMBL-Plants: tr|G7L8X6|G7L8X6_MEDTR RAB GTPase-like protein A5B; Found in the gene: LotjaGi4g1v0449800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:82203457..82206400) extracted from Lotus japonicus Gifu genome v1.2.

TTCTACGGTCTCATAACCATAATTTTGGTCTTCCAGCTCCATCTTTTGTCACTGCTAACATCTGATTGCATTTTCTTTCA ATCTTTGAAAATCCTTCTCTGCTAACATAAGAAATATTCTACTTTTCCATTCATCTGCTAAGCTATGGCGAGGACCGGAA ACAAGAGTTTACAAGCCAAACTGGTAGGTATGTCTTCCCTTTTCTTGATTTGATGAAGAAGTGAAGAACCCAAATAGCTC TTGCTTGAGCTTGACACATTAGGTGTTAATACAGAACAACATATTACTTATTTAGTTCTTGTTACATTTTGCATGACATG TCTACCACTAAATTAAGCACTTATGGCAATAAGCGCTAATGACATAAACTAATTTGAAAAACTTATTGAAATAAGCTGAA CAAAACTTATGAAAATAAGTTTAACACAACTATAGGTGAATCATAAGCTATTTACATAAGCTCTTCATAATAGTTGCATA AATACTTATGCTATAATATAAGCTGCAATAAGCTCTTCCAAACGGTTATATTGTCTATCTATTAATCAGCTTAAGCTCCT TTTTTTGCTAATTAGTTTCTGATCATATGATGCTTAATTAGAAGAAAACATTCTCAAGTTGTTAACTTCATCTATGATTC CGTAGGTGCTTCTTGGAGACATGGGAACAGGGAAGACAAGCTTGGTTCTTAGATTTGTCAAAGGCCAATTTTCTGAGTAC CAGGTTGCTGTTGTTTCTCTTTCCATACTTTATTATTTTGATTTTAGCTATGTTTGGATACTCATTGGCCTGTGCAAATA AGCTCACATTGAGATGAAAGTGAACATAACTATTCTTATTTCTTATGGATTAAAATGAAAATTCATTCATGTTACACGTA CTCAATTGTTATCCAAACACATGTTTTCTTCATGCCCTTCACATTATCGTAGTGGATAAACATTAATGTATGTCTGCAGG AATCAACAATTGGAGCAGCATTCTTCACTCAGGTTTTGTCTTTGAATGAAGCCACGGTGAAGTTTGATATATGGGACACT GCAGGGCAAGAACGATACCACAGTTTGGCTCCTATGTACTATCGTGGTGCTGCTTCTGCTATAGTTGTCTATGACATTAC AAGCATGGTAACTGCTAAATACTAACTAAATATTAAGTGTATGCTTGAAAATTCTTCTATAACTGACTTGAAAGACAGTC AATCAATTTTTCGAAGAAGCATTAGAATCGATTTTGACGAAAGAGAAAAACATGTCTAATTGATGATTATTGGTAGTGTT TTGGACGGAATAATCTTCATTTTGCTTACAAGTGATTAGTTGTTTTGGAAAAAGAATTTCACTAGTTCATGATTATTCTA ATGTGTGTAACTTTTATGAGGTTCAGTCTTATGTTCTGTTTAGGTGTTTATTACAGAATCTCTAAATACATTTACAGTGA AAACTTCCCAGACTGATGCACTTTCTAACTCATCAGGAATCTTTTGTGAGAGCAAAGAAGTGGGTTCGAGAAGTGCAAAG ACAAGGTAGTAACTATCATCTAAAAGCAAATGTTTTGTGAACAATCTTGAGAAACATTGAGCTTAATATGAATCATCTGA ACCAGATTTCTATGTAGTTCAACATAGCATTGTTGGAAAGTTTATCAAAAACTTCATAAGATGATACTAATTTGATGTTT TGCTTAATTTGAAAAATCATGTCAGCAAATCCAAATTTGATCATGTTTTTGGTGGCTAACAAGGCTGATTTGGAAGATGA GAGAAAAGTCAGAAATGAGGTATTTCTAGTGAATTGTTCTCTTTACTTTATGATTTGCTTATTATACGATTTTCAGAGGT TCATTTGTGATCTTTATTCTCAGGAGCCTACACTAATTGACCCTTCACCCTTGCCCTCATTAGAATCTGTTTTGGTAATC ATCTCTCATATGATTGTACTTGTATTAATGGTTGCAGGATGGTGAGGAATATGCCAAAGAAAATGGTATGACCTTTTTTG AAACTTCAGCAAAAACCGCACAGAATGTCAATGAGCTCTTCTATGAAATAGGTAAAATAATATAACTTACAAGTTTGGAT CAGCTTCTCTTTTATCAAAATCAATTCTGAAACCTAGAAGCTGCTCACAGAAACTACTCCCCATAATTGATTCTGACTCC AGTGTTGTATATGTATAATGCATTTTCTGAGAGAATTTGTTTGGCAAACTTCTAGGAATTTAACCAATTGATCAACAGTT CCGGGGAATTTTAATTGTTCCTATGTTTGCATAAAATCCGTATTGCCACTTCTCAAAGTTGTGGGTTTCCAGACCTTAAA ATCTGAATGGGGTGACACTAATGATTGTTAAAAACTTCCATGTTCAGATTTATTACTTACAGAAACAAATTTTTGCAGCT AAGAGATTGGCAAAAGCTAATCCTTCACGTCAAACCGGAATCAAGCTGCAAAGCAGACCTCAAGAAAGAAGAAGAATGTT TTGTTGTGCTTAATAGCATGTCTTTGATCTTTTCAATTTGAAAGTATCGTTATGTTTAATGGCATGTCTATTGTACTCAA ATAAACTTGGATACATAACTCTAATACCAAGTTCTCACTGGGGAATCATCAAATCACTCACGAGTTGGCCTGCTACTTAA GGAGTATGGACCAGTGAGAACCAGATCCATTGTTTATCTCTACATGCTTTCTCAGACAAGAAGTCAATGTACATTGTATG ATGTTACACCCTAAGTTGGTAACATTTGGTGTGGGCGAATTTCTCTTTGTTTGTTCCAACAGACAAAGCTTTTTTTTCTT TAATTGAATGTTGTATTTGTTCATTTATATACAACAAAGATTTACCAGAACTCACTAGATACTAAATAGAGATGACACTG TGAAAGCTATGAAATACCAATGTAAGTTGTGATAGGAATGAAGTATGGATTAAGATGTCAGCTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0449800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAGGACCGGAAACAAGAGTTTACAAGCCAAACTGGTGCTTCTTGGAGACATGGGAACAGGGAAGACAAGCTTGGT TCTTAGATTTGTCAAAGGCCAATTTTCTGAGTACCAGGAATCAACAATTGGAGCAGCATTCTTCACTCAGGTTTTGTCTT TGAATGAAGCCACGGTGAAGTTTGATATATGGGACACTGCAGGGCAAGAACGATACCACAGTTTGGCTCCTATGTACTAT CGTGGTGCTGCTTCTGCTATAGTTGTCTATGACATTACAAGCATGGAATCTTTTGTGAGAGCAAAGAAGTGGGTTCGAGA AGTGCAAAGACAAGCAAATCCAAATTTGATCATGTTTTTGGTGGCTAACAAGGCTGATTTGGAAGATGAGAGAAAAGTCA GAAATGAGGATGGTGAGGAATATGCCAAAGAAAATGGTATGACCTTTTTTGAAACTTCAGCAAAAACCGCACAGAATGTC AATGAGCTCTTCTATGAAATAGCTAAGAGATTGGCAAAAGCTAATCCTTCACGTCAAACCGGAATCAAGCTGCAAAGCAG ACCTCAAGAAAGAAGAAGAATGTTTTGTTGTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0449800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARTGNKSLQAKLVLLGDMGTGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYY RGAASAIVVYDITSMESFVRAKKWVREVQRQANPNLIMFLVANKADLEDERKVRNEDGEEYAKENGMTFFETSAKTAQNV NELFYEIAKRLAKANPSRQTGIKLQSRPQERRRMFCCA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
6 197 192 3.8E-66 –
ProSiteProfiles
PS51419
6 198 193 33.268 –
SUPERFAMILY
SSF52540
8 183 176 1.25E-55
IPR027417
SMART
SM00173
8 174 167 2.7E-33 –
PANTHER
PTHR24073
9 197 189 7.6E-92 –
PANTHER
PTHR24073:SF1112
9 197 189 7.6E-92 –
CDD
cd01860
10 171 162 1.77251E-111 –
TIGRFAM
TIGR00231
11 167 157 4.0E-31
IPR005225
PRINTS
PR00449
11 32 22 2.6E-36 –
SMART
SM00175
11 174 164 3.1E-77 –
Pfam
PF00071
12 171 160 6.1E-61
IPR001806
SMART
SM00174
13 174 162 5.8E-12 –
SMART
SM00176
16 195 180 1.9E-8 –
PRINTS
PR00449
34 50 17 2.6E-36 –
PRINTS
PR00449
52 74 23 2.6E-36 –
PRINTS
PR00449
114 127 14 2.6E-36 –
PRINTS
PR00449
149 171 23 2.6E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0449800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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