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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0449800 |
| Transcript ID | LotjaGi4g1v0449800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P29687|RAB5_TOBAC Ras-related protein Rab5; TrEMBL-Plants: tr|G7L8X6|G7L8X6_MEDTR RAB GTPase-like protein A5B; Found in the gene: LotjaGi4g1v0449800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82203908..82205893) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGCTCTTCCAAACGGTTATATTGTCTATCTATTAATCAGCTTAAGCTCCTTTTTTTGCTAATTAGTTTCTGATCATA TGATGCTTAATTAGAAGAAAACATTCTCAAGTTGTTAACTTCATCTATGATTCCGTAGGTGCTTCTTGGAGACATGGGAA CAGGGAAGACAAGCTTGGTTCTTAGATTTGTCAAAGGCCAATTTTCTGAGTACCAGGTTGCTGTTGTTTCTCTTTCCATA CTTTATTATTTTGATTTTAGCTATGTTTGGATACTCATTGGCCTGTGCAAATAAGCTCACATTGAGATGAAAGTGAACAT AACTATTCTTATTTCTTATGGATTAAAATGAAAATTCATTCATGTTACACGTACTCAATTGTTATCCAAACACATGTTTT CTTCATGCCCTTCACATTATCGTAGTGGATAAACATTAATGTATGTCTGCAGGAATCAACAATTGGAGCAGCATTCTTCA CTCAGGTTTTGTCTTTGAATGAAGCCACGGTGAAGTTTGATATATGGGACACTGCAGGGCAAGAACGATACCACAGTTTG GCTCCTATGTACTATCGTGGTGCTGCTTCTGCTATAGTTGTCTATGACATTACAAGCATGGTAACTGCTAAATACTAACT AAATATTAAGTGTATGCTTGAAAATTCTTCTATAACTGACTTGAAAGACAGTCAATCAATTTTTCGAAGAAGCATTAGAA TCGATTTTGACGAAAGAGAAAAACATGTCTAATTGATGATTATTGGTAGTGTTTTGGACGGAATAATCTTCATTTTGCTT ACAAGTGATTAGTTGTTTTGGAAAAAGAATTTCACTAGTTCATGATTATTCTAATGTGTGTAACTTTTATGAGGTTCAGT CTTATGTTCTGTTTAGGTGTTTATTACAGAATCTCTAAATACATTTACAGTGAAAACTTCCCAGACTGATGCACTTTCTA ACTCATCAGGAATCTTTTGTGAGAGCAAAGAAGTGGGTTCGAGAAGTGCAAAGACAAGGTAGTAACTATCATCTAAAAGC AAATGTTTTGTGAACAATCTTGAGAAACATTGAGCTTAATATGAATCATCTGAACCAGATTTCTATGTAGTTCAACATAG CATTGTTGGAAAGTTTATCAAAAACTTCATAAGATGATACTAATTTGATGTTTTGCTTAATTTGAAAAATCATGTCAGCA AATCCAAATTTGATCATGTTTTTGGTGGCTAACAAGGCTGATTTGGAAGATGAGAGAAAAGTCAGAAATGAGGTATTTCT AGTGAATTGTTCTCTTTACTTTATGATTTGCTTATTATACGATTTTCAGAGGTTCATTTGTGATCTTTATTCTCAGGAGC CTACACTAATTGACCCTTCACCCTTGCCCTCATTAGAATCTGTTTTGGTAATCATCTCTCATATGATTGTACTTGTATTA ATGGTTGCAGGATGGTGAGGAATATGCCAAAGAAAATGGTATGACCTTTTTTGAAACTTCAGCAAAAACCGCACAGAATG TCAATGAGCTCTTCTATGAAATAGGTAAAATAATATAACTTACAAGTTTGGATCAGCTTCTCTTTTATCAAAATCAATTC TGAAACCTAGAAGCTGCTCACAGAAACTACTCCCCATAATTGATTCTGACTCCAGTGTTGTATATGTATAATGCATTTTC TGAGAGAATTTGTTTGGCAAACTTCTAGGAATTTAACCAATTGATCAACAGTTCCGGGGAATTTTAATTGTTCCTATGTT TGCATAAAATCCGTATTGCCACTTCTCAAAGTTGTGGGTTTCCAGACCTTAAAATCTGAATGGGGTGACACTAATGATTG TTAAAAACTTCCATGTTCAGATTTATTACTTACAGAAACAAATTTTTGCAGCTAAGAGATTGGCAAAAGCTAATCCTTCA CGTCAAACCGGAATCAAGCTGCAAAGCAGACCTCAAGAAAGAAGAAGAATGTTTTGTTGTGCTTAA
CDS sequence (LotjaGi4g1v0449800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACAGGGAAGACAAGCTTGGTTCTTAGATTTGTCAAAGGCCAATTTTCTGAGTACCAGGAATCAACAATTGGAGC AGCATTCTTCACTCAGGTTTTGTCTTTGAATGAAGCCACGGTGAAGTTTGATATATGGGACACTGCAGGGCAAGAACGAT ACCACAGTTTGGCTCCTATGTACTATCGTGGTGCTGCTTCTGCTATAGTTGTCTATGACATTACAAGCATGGAATCTTTT GTGAGAGCAAAGAAGTGGGTTCGAGAAGTGCAAAGACAAGCAAATCCAAATTTGATCATGTTTTTGGTGGCTAACAAGGC TGATTTGGAAGATGAGAGAAAAGTCAGAAATGAGGATGGTGAGGAATATGCCAAAGAAAATGGTATGACCTTTTTTGAAA CTTCAGCAAAAACCGCACAGAATGTCAATGAGCTCTTCTATGAAATAGCTAAGAGATTGGCAAAAGCTAATCCTTCACGT CAAACCGGAATCAAGCTGCAAAGCAGACCTCAAGAAAGAAGAAGAATGTTTTGTTGTGCTTAA
Protein sequence (LotjaGi4g1v0449800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAASAIVVYDITSMESF VRAKKWVREVQRQANPNLIMFLVANKADLEDERKVRNEDGEEYAKENGMTFFETSAKTAQNVNELFYEIAKRLAKANPSR QTGIKLQSRPQERRRMFCCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 179 | 179 | 8.6E-62 | – | |
| PANTHER | 1 | 179 | 179 | 1.2E-87 | – | |
| PANTHER | 1 | 179 | 179 | 1.2E-87 | – | |
| SMART | 1 | 156 | 156 | 1.7E-68 | – | |
| ProSiteProfiles | 1 | 180 | 180 | 31.458 | – | |
| CDD | 1 | 153 | 153 | 5.41332E-104 | – | |
| SMART | 2 | 156 | 155 | 2.6E-10 | – | |
| Pfam | 2 | 153 | 152 | 1.4E-56 | ||
| SUPERFAMILY | 2 | 165 | 164 | 5.9E-51 | ||
| SMART | 2 | 156 | 155 | 1.7E-25 | – | |
| SMART | 2 | 177 | 176 | 7.3E-6 | – | |
| TIGRFAM | 3 | 149 | 147 | 5.1E-28 | ||
| PRINTS | 16 | 32 | 17 | 3.9E-25 | – | |
| PRINTS | 34 | 56 | 23 | 3.9E-25 | – | |
| PRINTS | 96 | 109 | 14 | 3.9E-25 | – | |
| PRINTS | 131 | 153 | 23 | 3.9E-25 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0449800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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