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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0451600 |
| Transcript ID | LotjaGi4g1v0451600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-tRNA hydrolase family protein; TAIR: AT1G18440.1 Peptidyl-tRNA hydrolase family protein; Swiss-Prot: sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic; TrEMBL-Plants: tr|G7L906|G7L906_MEDTR Peptidyl-tRNA hydrolase family protein; Found in the gene: LotjaGi4g1v0451600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82381245..82385967) extracted from Lotus japonicus Gifu genome v1.2.
GTTTACTGAGTCGTTGTAGTATAGTGGTAAGTATTACCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGC GTTTTGAATATTGTTTTTATCTATTTTCCATATCCAGTTCCCTCAATCCATCTTTTCTAGGGTTCACGTTTTGCTTCTTC CTGCAACCTTCCTCGAAGGAACCATGAACGTCGCTACTTGTTCGGTATCATCATTCAACTTCCCAAGGTGGCGCCGATTC TCAAAACCCCTCATGTATCTCTCTTCTTCCTCATCCTGCGTCATGTCTCTCATGTCTCCTCAGAATTCCTCAGCTTCCAT AACCACCGCTGCATCACCCACCATACAGCCCAAGAAGAAGGAACCTTGGTTAATCGTTGGCCTCGGAAACCCCGGGAAGA AGTACGCTTCTACTCGCCACAATGTCAGTAACAGTAACTCATTCAGTTCCATGTTAATTCATGTATGATTTTGATTATTG AACTGCTGACTGTGCTGCATAGCTGAATGGGATTTTGGAATTTTGTTTCAGGTGGGATTTGAGATGGTTGATACTATTGC TGAAGCTGAAGGGATATCTATCAACAGTGTTTCTTTCAAGGCCCTGTTTGGAAAAGGTAAAAAAATAACCGAATTTTCGC TCTCTGATTAATTTGTGATTAGCATCAAAATGTATTTATTTATCTTCAGTTCTTTCAGTTTTGGTGTCCATGTTGTGATA ATTTAAGTATTTGTAAGTGTGTTCCTGTTTGTGACAGTTGTTTTCTTATTGCAGGTGTTATTGGTGATGTACCGGTTATA CTTGCAAAACCACAGACTTATATGAATTTAAGCGGTGAATCTGTAAGTCTGCTGTCTGTAGAATCTTTAGATGTAATGAT AGGGTAGGATAGCAATGCTAAGAGAAGTGTTCAAAAAACATTTTCTCATGTGACTTGATTCTGTATATGGAATCTTTTTT GCCGAATACTCAAATTTCGTAGTTACAAAATGATGAATAACTGGGGAGGAAACATCATCAACCAAATTACAGTTCTTTGA AGCTAGCTAAATTAATTATGGTCTGATTAATGTGCATATGGACCAGAAAACATTGCTGAAATCTAAAATCATAGGAATCC ATATGATTTTTTATTTAAATAGTTAGGCAAGAGATGTGCATAGACACTCTTATTTCTAATTTCTATATGTGAGTAATTCT TTTTTTCACTTGTCAGAGAATGGGGGAATCCACAAGTGTTCAAACATTAGTAATTCTTTTTTTCACTTTGGTATTTGACA TTTCACATTTGACAGCCCTTAGAGTAGCCTTGATGAAGCAGTAGTGCTTTGTAGTTATTGATAGTCAGGGATTTGACCAT TGGTAGCCAGACACTTGAAAATAGTACCGATATACTTCAACACTTTGGATGCTCCTAACGTACATTCTACATTTTTTTAG GTTTTTTTATACCAATACAGATGGGAATACCATATGCATTTATTATCTTTACAAGAAATCATGCTAGATTAAAACATCAA TTCTCTTTTTGATTTAAGATTTTTTTCTTTTATGTCCATGCTATGCTGATTTTATATGTTGTGTATTACTGTAACGCCCT ATTCCTATAATTTCAAACATTTGCCCTGTGTACCCCTATCCATTTTCAGTTCCTATCATGTCCTTGTTCTATTTCTTACC TGTGCTTCTTAAGATTTTACTGAAATAAAGATTTCTGTTTTGATGCTGATTGGCTGACGTTGAAATCTATTTTGAAGGTT GGGGCCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTCGTGGTATAGTATATACGCTATGACTACTTTGTTCT TTTTATTTGCTAGTGATGAAGAAAATGTGGAAGGATGATCTTCCCGAGTGTTCAGTTAATAATTTTCTTTTTCAGATCTT TGATGACATGGATTTGCCTTTTGCTAAATTGCGGCTGCTACCAAAGGGTGGACATGGAGGTCACAATGGGTAACTAAAAT ATACTTTGGTTTGACATCCTATTAAGTTCATAAATTTGTTTCAAAAAAAGTTCATAAATTAACATGTCCACTGTTGTTCT GAATATCATGGCCAAGTTTCTTAAATCTTAACATTTCTTAAAGTATAAATGCCATGTTTTTATTCCTTCTTTATTCTCAC CCACAATCTGGGTCACTGATCTGACAATGCTCTACTTGAAGAATGCATTGCTGCAAAATCATTTTATATGCTATCAACTG GATCAAACCAAAGATTATTGATGGTTGTGAGATGCTAGGCTTTCACATTTATTTGCCTTATCTTGGATAGTAACTATTTG TTGTCATTGGATGTGGCTAAGTTTTTCGATCTTTGGCTAATGTTCACAATAATCTCCTCCCTTTCTCTTGGGGCTAAGTG TATTTGAGTAGCTGTGTTGTGTGACTAAGACAATATGCATAGCAAGCATACAGAGAACGAGAATTACAATAGGAAAACGT AAACACCTTCCTTTCTCTGCTTAAATTATATGTGATGTCGATAAATTAGCTTCCTTGTCCCATCATTCCAAGCACTATTT TGTGCAGGACCCTCTGAAATTGATTCCTTCTGTTAACCTAGCCTTTTGTATTTTAATTTGCTTTGCGTAGTTCAGCATAT GCCATGCATGTTTAGGAAAGTCATTGTCGTCATCTCTCTATATTTTGAAAGGCGGTTGAAGACATACAACAAGCCTGTAC TATTTTATATTGATCGTGTTTGTTGTTAAACGGAAGAGAAATGAAGCCTCACTATTTTTGTTCTCCTTGCTATTTGGCAG AATGAAGAGTGTTATTAATCACTTTAAAGGGAATCTTGGTTTTCCCCGTTTAAGAATTGGTATGTTCATATCGTTTCTAG GATTATAACATTCATTTATATGATAAAATTTGTAATATCTAATTCTCATTTTGCTGTTAATTTTATTAGGCATTGGACGG CCTCCTGGCAAAATGGATCCAGTGGCATTTGTTCTTCGCTCATTCACTAAACAGGAAAGAGAAGAGGTAGGCATTTCTTT TCTTTTCATTTTGAACTGATAAGTTGGCCTTAGGCACATGGCAGTCCTAAACATTAATAAATTTTCAGTTGGATTTTACA TTACAACATGGATTAGAAGCTGTGCGGATTCTTTTGCTGGAGGGGTTTGATAAAAGTGCAACATTTGTAAATAGTTCTAA GAAGATGGAGCAAATAGGTTGAGGGATAGCCGACTTTATAGACCTTTTGGCAAGTGCAAACAAACAGGTTTTATTGGAAG AAGATACAAATAACTTCAAAGAGTAAACTCATGCAAGGTTCTGTTGTCAATTGAAAAGACCAATGTTTAAGCAAGTATTC ATCCATTCTTTCAGAAAGCAGTTCCAGCAAATGAATTTGAACCAGATGCTTGGAATCTTGAGGTTCTTGTAGTATACATA CTGCTATGTTTGATCAATTTTGACTAGCTCCATCACAGTGGATTGTTGATATCATGTTATGGAATCAGTAGGCAATTGTA GGTATATTTTGTCATATAAGATCATTTTCTGTTTATAAAGATCCATCTTGGGCTGACCACGAGTTGATACCTCGAATGCC ACTTGACCATTTGTGTTTGTCATTGCATTAGATGACCTTGATGTCTTGAATTTACTCATCCCATTCCTTTTCCTCATTCT TTGGGCCACTAGACCTTTTGTATACTTTTTCATAATAGCATAATAATAATGAAGAGTCTTTGACTGCTTGCTCTGGGTGC TACCTTTTGTTATTTGTGTGTGTGTGTGTATAATCTGTCTATAAGTAAAAGAGGTGATCAGGTGAAGAAAGAAATGTGTC TGCAAGTGCAAGTCCTGTTATTTAGTATAATAATAAGTCAGGCAGTGGCGGAACATCATTGGGACAGGGGAGGGCCACTG CCCCCCCCAATATTTTAAAATTTAAATTGAATTACCGGTACGGGGCTTGAGAAGTAAGGGGAAGCACATAAGAAGTTGGG TCTCTAAACCAACTCTAGCTAAGCATCCACTGGGAGCTACCGAATGGTTCATTATATTGGTCTCAACTGTCAAATATCTT ACTTGGAGCTTTATTTCTTGGTCACTGGTTGGCTTGGATAATTGGATAAGTTGAAAATGTTAATTGTCCCTCTCTGCTGC TTTGTTCCTGTTTCAACTCAGTTTTCTTTCATCTCTTCCTTGATTTCATTATTTTCTTTTTCCACAAAATTTCCACCCAA TTAACTATGTCAATTAATCTGTGATTCTGTTTGATAGTTGCAACATACATTCATCCATACATAAAGAAGGGGCTTTAATT TTAAGATATGTATAGTTTTTGTTTCAACTTTCAATGGTGTTGGTATATTTTATATGATGGAATTAGAAGAAGCATAAGAT GAAGATTGGGATACTAGTCAATACTGGCCACACCCTCAACATATGGTCTAGTTCCGCCCCTCCAAATGTTATGGTCTAGT TCCGCCACTGAAGTCAGGTGATTCCTTCTCGTTTGTTCTGCTCTGCATGTGAAGTGTATTGTATCATTTCCAGATCAATA ACGAGAAGAATATTTTAATGTAATCAAGCTAAGCTAGCGTTAAGAGCTTGTTTCTCAATACTTCTTTCTGTACAAAACAT CATGTTCTTTCTGATTTATATCGTGATTCCTTCCATTCCATATTTGTCTATATAACTTAATTCACTTTTTATAATTTAAA ATT
CDS sequence (LotjaGi4g1v0451600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGTCGCTACTTGTTCGGTATCATCATTCAACTTCCCAAGGTGGCGCCGATTCTCAAAACCCCTCATGTATCTCTC TTCTTCCTCATCCTGCGTCATGTCTCTCATGTCTCCTCAGAATTCCTCAGCTTCCATAACCACCGCTGCATCACCCACCA TACAGCCCAAGAAGAAGGAACCTTGGTTAATCGTTGGCCTCGGAAACCCCGGGAAGAAGTACGCTTCTACTCGCCACAAT GTGGGATTTGAGATGGTTGATACTATTGCTGAAGCTGAAGGGATATCTATCAACAGTGTTTCTTTCAAGGCCCTGTTTGG AAAAGGTGTTATTGGTGATGTACCGGTTATACTTGCAAAACCACAGACTTATATGAATTTAAGCGGTGAATCTGTTGGGG CCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTCGTGATCTTTGATGACATGGATTTGCCTTTTGCTAAATTG CGGCTGCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTTAAAGGGAATCTTGGTTT TCCCCGTTTAAGAATTGGCATTGGACGGCCTCCTGGCAAAATGGATCCAGTGGCATTTGTTCTTCGCTCATTCACTAAAC AGGAAAGAGAAGAGTTGGATTTTACATTACAACATGGATTAGAAGCTGTGCGGATTCTTTTGCTGGAGGGGTTTGATAAA AGTGCAACATTTGTAAATAGTTCTAAGAAGATGGAGCAAATAGGTTGA
Protein sequence (LotjaGi4g1v0451600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVATCSVSSFNFPRWRRFSKPLMYLSSSSSCVMSLMSPQNSSASITTAASPTIQPKKKEPWLIVGLGNPGKKYASTRHN VGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAKPQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKL RLLPKGGHGGHNGMKSVINHFKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK SATFVNSSKKMEQIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 44 | 44 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 44 | 44 | - | – | |
| PANTHER | 23 | 253 | 231 | 1.3E-127 | – | |
| PANTHER | 23 | 253 | 231 | 1.3E-127 | ||
| Phobius | 26 | 36 | 11 | - | – | |
| Phobius | 37 | 44 | 8 | - | – | |
| Phobius | 45 | 255 | 211 | - | – | |
| Gene3D | 48 | 249 | 202 | 6.0E-74 | ||
| Hamap | 61 | 239 | 179 | 33.199 | ||
| SUPERFAMILY | 61 | 246 | 186 | 4.97E-66 | ||
| Pfam | 63 | 240 | 178 | 2.9E-57 | ||
| TIGRFAM | 63 | 242 | 180 | 9.9E-58 | ||
| ProSitePatterns | 74 | 87 | 14 | - | ||
| ProSitePatterns | 167 | 177 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aminoacyl-tRNA hydrolase activity | Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA. |
Expression pattern of LotjaGi4g1v0451600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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