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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0454500 |
| Transcript ID | LotjaGi4g1v0454500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT1G23200.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|O04887|PME2_CITSI Pectinesterase 2; TrEMBL-Plants: tr|A0A072TV68|A0A072TV68_MEDTR Pectinesterase; Found in the gene: LotjaGi4g1v0454500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82621420..82625022) extracted from Lotus japonicus Gifu genome v1.2.
CGTCAACTAATTAACTTCATGCATGGCCCCTCAAATACGTCAAACATCCTATATAGGCCTAACACCCACAAATTAGTATA CCTTTATGGCCTACCAATGCCAAGTTCTACCCTATATATAGGACCATTACCTTAGCTATTTCAATTCATAACCACTTCAA AAAAAAATCCTCTCATTCCTACATTGACTAGTCATCATATAATAGAAAACCCTTTTGATCATTTTCACTTTCCACATGGA CAAGCTCTTATTCAACTGTTACATTGGATACTTCCTTCTTTTCCATTCTCTTTTGGTTGTGCATGGCATAGATCAATTAT CATGCAATAAAACCCCATACCCTCAAGTGTGCAAGCATTACACTAGCACCATGACCAACACATTATCAACTACCCAAGAT GCTTCATCATCTTCTTCTTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGATCAAGCCATTGAAGCCCACAAACA TGTCTCCACCATGGAATTAAATAATTACTTCAATGACAAGCAAGCCAAGTCAGCATGGGAGGATTGTTTGGAGCTCTATG AGGACACAATTCATCAACTCAATCGTTCAATGAGCACAAACAATCTAAATGACAAGTTAACTTGGCAAAGTGCTTCCATG AACAACCATCAAACATGCCAAAATGGTTTCATTGACTTCAACCTTGACTCTCACTTGAACCACTTCCCATCCATGCTAAG CAACTTCTCGAAGTTGCTCAGCAATTCCTTGTCCATAACCAAGGCTATGACATTATCATCAGTATCAGCATCATTGTCCA CCAATTCCAAACAAATCGGTGGGCGAAGGTTGCTTTCAGCAACACTGAGCCAAAAGAACAAGATACCAAGAGACCAGGAT CACGGCTTCCCCGTCTGGTTGTCTTCTTCAGATAGAAAGCTTCTTCAGGTGCCGAGGGAGGAAGCAAAAGCTGATGTTGT GGTGGCACAGGATGGGAGCGGGAACTGTAAAACTATCTCTGAGGGTGTGGCTGCAGCTGCTAAGCTTAGTGGTAAAGGGC GAGTTGTAATTCATGTCAAAGCAGGAGTTTACAAAGAAAGTGTTAACATCCCAAGGACAGTGAGGAACTTGATGATCATT GGAGATGGGATGGGTGCCACTGTTGTTACTGGTAGTAATAACGTACAAGATGGCTCCACCACTTTTCGTTCAGCTACTTT TGGTAAGTTCATCTTAATTAACTCATGTATTCACAAATATATATATCATGTGTTGAAAGAGAATATATATATATATATAT ATATATATATATATATATATATATATATATATATATAAAAGATTGATAGGTTTATTGAGATACACACTTTGGAAAGTGAA CACATATTATTACTTGACGTCTTGACCCTATATTGAGACAAGGACATGAAGCACTTATTTCAGGACAACAATTTTATGCA CAAAAAATAAAAAATGTGTGCATGAAATGTTTTTGAGAAAACTGTGATTATACATAAACATACATAATTTTAGTGACATC TTTCAAACATATGTTCTTACAGCAATTTTTAACGCAAACTTTTGTTCAAAAGGCGTCACAAAAATAATATGTTCGACGAT TATTTTTATATTATTTGTAATTTCTTCGTTTCTAATATCTTTCCTTCTCCGCAACAAATTTACATAAAATATTGGATAAA CATCTAATTTTGATCTTATTAATATGCATATTATTAACGGTTAAAACGTTTGTCTATTAAATATCATCCAAAATCAAATG TTTATAACATTTCACTTGTCAGCACTTTAATTATATATACCAGTGAGAAAATCTTTTTGTTTTCACTGTATACTAGTGAA AATATCTCATGCATAGAATTGACTATGACTTTTAAAAACTTATTTTTATGTAGTGTTTATTATTTGTCAATTATTATCAT GTATTATTATATATTTCTATTGGAAAGTTCTAACCCTTTGTTTATTTGTTACAGCGGTGATGGGTGATGGGTTCATTGCC CGTGACATGACCTTCGAGAACACGGCAGGACCACAGAAGCACCAGGCGGTGGCTCTCCGCTCCGGCGCCGACCACTCCGT GTTCTATCGCTGCGGCTTCAAGGGCTACCAGGACACCTTATACGTCTACTCCCAACGCCAATTCTACCGTGACTGTGACA TCTACGGCACCATAGACTTCATCTTCGGCGACTCCGTTACGGTGCTTCAGAACTGTAACATCTTCGTGAGGAAACCCATG AGCAACCAGCAGAACACCGTGACGGCGCATGGAAGAACTGACCCCAACGAGAACACCGGTATCATCATCCACAACTGCCG TGTCACCGCAGCAGGTATATATATATCATCTAATTATTCATTGTTGATTTTGAGAAGAAGGAAAAATATTCATGAACATT CGCAAAGTGCAAACATTTCGTAGATAATATAAAGTGAGAAAAGACATAAATAATTAATTTAATATATGATATGATCCGAT TAAGAGTTTGTCATTAGTAGGGAAAATAATTAGCAGACATCTGCTTAATGCAAACACCGAGAGTACAGACGTACCTATAG TGAAAAAGAAAGAGAATGAGAGGTGTCTAACTAATTATCATTACTGTTTTGATAAATATGTGTTAAACTTTCATTCGGTC TCTTACCTATTTTTTCTGGTTGTTTCAGGGGATTTGAAACCTGTGCAGGGCTCTGTTGAGACTTACCTAGGAAGGCCATG GCAGAAGTATTCGAGGACGGTGGTGATGAAGAGTAATATTGATGCGTTAGTTAGCCCTGCAGGTTGGGCTCCTTGGGCTG GAAGCTTTGCCTTGAGCACACTCTATTATGGTGAGTACATGAATGTTGGAGCTGGTGCCAGTACAGGGGGGAGGGTGAAG TGGGCTGGGTTTCATGCCATCACTAATCCTGCTGAGGCTGGGAAGTTCTCTGTTGGGAATTTCTTGGCTGGAGACTCTTG GATTCCTGGTAGTGGAGTGCCCTTTGATGCAGGTTTGTAAAGAAGACCATTGAAGCATAATAGTGTGTTTGAATTTCAGT TGAAGTCCGCGCTACAAAATCCTAATTCATCAAATAATTCTTACATCACCAAAAAACTAAACAAATCAAAATATTAGGAT AATGTTAAAATAATTTTTGACATTTTTTTAATGCTGGTGAAGTAAAAGGTGATGGAGATGGAACTCAGAAGTGGGGAACA CTTGGTTGTTTGTTAATATCAAAAAGTGGGATGGTGACTTTATGAAGTGAGGAAATTGTCATGTAGTTTGTGTTGGGTTT TCCCTTGTACAGAGGGTACAGAAGATGCTGTTTTGTTTTTGTGCTCTGTTCCTTTTGTCAAAGGAAAGGGTCATGTATAG TTTCAAATTTTCAACATTGTAAATTAGCATCAAGCTTCCTCTTTAATGTTCAGTTAATTGTAATTAATATATCAATTCAA GAAAAAGTATATATGTCCACTTGCGCATTGCTTGCTTTGATGTTGTTGTCCACTTAAATTGTAGGATTAATTAGTTATGA TTTCTCCAATCAATAATGATATTTTGACTGACCTTCATTTTTATATCTATTTCTGATTTTTTTTTAAAAGAAATTCTCAA GCT
CDS sequence (LotjaGi4g1v0454500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGCTCTTATTCAACTGTTACATTGGATACTTCCTTCTTTTCCATTCTCTTTTGGTTGTGCATGGCATAGATCA ATTATCATGCAATAAAACCCCATACCCTCAAGTGTGCAAGCATTACACTAGCACCATGACCAACACATTATCAACTACCC AAGATGCTTCATCATCTTCTTCTTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGATCAAGCCATTGAAGCCCAC AAACATGTCTCCACCATGGAATTAAATAATTACTTCAATGACAAGCAAGCCAAGTCAGCATGGGAGGATTGTTTGGAGCT CTATGAGGACACAATTCATCAACTCAATCGTTCAATGAGCACAAACAATCTAAATGACAAGTTAACTTGGCAAAGTGCTT CCATGAACAACCATCAAACATGCCAAAATGGTTTCATTGACTTCAACCTTGACTCTCACTTGAACCACTTCCCATCCATG CTAAGCAACTTCTCGAAGTTGCTCAGCAATTCCTTGTCCATAACCAAGGCTATGACATTATCATCAGTATCAGCATCATT GTCCACCAATTCCAAACAAATCGGTGGGCGAAGGTTGCTTTCAGCAACACTGAGCCAAAAGAACAAGATACCAAGAGACC AGGATCACGGCTTCCCCGTCTGGTTGTCTTCTTCAGATAGAAAGCTTCTTCAGGTGCCGAGGGAGGAAGCAAAAGCTGAT GTTGTGGTGGCACAGGATGGGAGCGGGAACTGTAAAACTATCTCTGAGGGTGTGGCTGCAGCTGCTAAGCTTAGTGGTAA AGGGCGAGTTGTAATTCATGTCAAAGCAGGAGTTTACAAAGAAAGTGTTAACATCCCAAGGACAGTGAGGAACTTGATGA TCATTGGAGATGGGATGGGTGCCACTGTTGTTACTGGTAGTAATAACGTACAAGATGGCTCCACCACTTTTCGTTCAGCT ACTTTTGCGGTGATGGGTGATGGGTTCATTGCCCGTGACATGACCTTCGAGAACACGGCAGGACCACAGAAGCACCAGGC GGTGGCTCTCCGCTCCGGCGCCGACCACTCCGTGTTCTATCGCTGCGGCTTCAAGGGCTACCAGGACACCTTATACGTCT ACTCCCAACGCCAATTCTACCGTGACTGTGACATCTACGGCACCATAGACTTCATCTTCGGCGACTCCGTTACGGTGCTT CAGAACTGTAACATCTTCGTGAGGAAACCCATGAGCAACCAGCAGAACACCGTGACGGCGCATGGAAGAACTGACCCCAA CGAGAACACCGGTATCATCATCCACAACTGCCGTGTCACCGCAGCAGGGGATTTGAAACCTGTGCAGGGCTCTGTTGAGA CTTACCTAGGAAGGCCATGGCAGAAGTATTCGAGGACGGTGGTGATGAAGAGTAATATTGATGCGTTAGTTAGCCCTGCA GGTTGGGCTCCTTGGGCTGGAAGCTTTGCCTTGAGCACACTCTATTATGGTGAGTACATGAATGTTGGAGCTGGTGCCAG TACAGGGGGGAGGGTGAAGTGGGCTGGGTTTCATGCCATCACTAATCCTGCTGAGGCTGGGAAGTTCTCTGTTGGGAATT TCTTGGCTGGAGACTCTTGGATTCCTGGTAGTGGAGTGCCCTTTGATGCAGGTTTGTAA
Protein sequence (LotjaGi4g1v0454500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKLLFNCYIGYFLLFHSLLVVHGIDQLSCNKTPYPQVCKHYTSTMTNTLSTTQDASSSSSYSFHDMALKVTMDQAIEAH KHVSTMELNNYFNDKQAKSAWEDCLELYEDTIHQLNRSMSTNNLNDKLTWQSASMNNHQTCQNGFIDFNLDSHLNHFPSM LSNFSKLLSNSLSITKAMTLSSVSASLSTNSKQIGGRRLLSATLSQKNKIPRDQDHGFPVWLSSSDRKLLQVPREEAKAD VVVAQDGSGNCKTISEGVAAAAKLSGKGRVVIHVKAGVYKESVNIPRTVRNLMIIGDGMGATVVTGSNNVQDGSTTFRSA TFAVMGDGFIARDMTFENTAGPQKHQAVALRSGADHSVFYRCGFKGYQDTLYVYSQRQFYRDCDIYGTIDFIFGDSVTVL QNCNIFVRKPMSNQQNTVTAHGRTDPNENTGIIIHNCRVTAAGDLKPVQGSVETYLGRPWQKYSRTVVMKSNIDALVSPA GWAPWAGSFALSTLYYGEYMNVGAGASTGGRVKWAGFHAITNPAEAGKFSVGNFLAGDSWIPGSGVPFDAGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 24 | 4 | - | – | |
| SMART | 21 | 174 | 154 | 7.8E-25 | ||
| Phobius | 25 | 552 | 528 | - | – | |
| Gene3D | 26 | 179 | 154 | 2.7E-14 | ||
| PANTHER | 27 | 551 | 525 | 1.5E-199 | – | |
| PANTHER | 27 | 551 | 525 | 1.5E-199 | – | |
| CDD | 28 | 179 | 152 | 5.13276E-30 | – | |
| TIGRFAM | 29 | 178 | 150 | 7.2E-19 | ||
| Pfam | 29 | 174 | 146 | 4.2E-23 | ||
| SUPERFAMILY | 29 | 178 | 150 | 8.89E-24 | ||
| Gene3D | 234 | 552 | 319 | 6.7E-132 | ||
| SUPERFAMILY | 237 | 551 | 315 | 4.19E-114 | ||
| Pfam | 240 | 538 | 299 | 8.0E-143 | ||
| ProSitePatterns | 266 | 285 | 20 | - | ||
| ProSitePatterns | 385 | 394 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0454500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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