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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0454900 |
| Transcript ID | LotjaGi4g1v0454900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82654356..82659092) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGTTGTTATTGGGGAAAAAAAGTGACTGAACCCACCATTCTAGATAATGAACCATTACGGTTGGGCCATTACAGGCC GATAAAAGAATCGTAAACCCAAGTCAAAGCCCTTAATAATGGCGTCGAAGATCATTTTTGTCAAAAAAAAAAAAACATAC ATGTGAGACCAGTGGCAGTAGAGAAAATTATTCAGGGAGCAAACATACGGTGGCCAGATCAAGTCATTGGACTGTGCTCC GGCGTCGCTGAGATTACAGGGAGGACTCAACCGGTAATTTACTTTGATCATTGATGTCTTCGTTTGGATTACTAGTTTTC TATCATGAATAATGAGCATAACCTGTTCGACGTATGTCCTGAACCAAACCCCATGATTTTCTGCTCCCATTCAATAATTC ACCACATTCTTCATCGTTTTTCTTCTTACCCTTTTTCATTTTATGATTTTTCAGCTGGATTTTCGACTTTTATGTTTTCT GCAGCTTCACTCAGAGGAGCAAGACATGTCTTTTCCTGCACATTCAATAGGTCCATTTTTTTCCCACTTAAACAAAGCAT TTATTTTATCTGATCATATTTTTTTACTCTATTTGTGTCGTCAGTTCATTTGTTCAGTGATTAGTATTGTCTATATTCTC GCGTGCGAGGTGAGTGGAAGAAAGGAGAAGTCCTTTTGCTTCTAATGCTTGGTTGAATTTAATTTCCTGTTGCTCAACAT ATTTAGGCTACTCCTGAAGTCCTTTTATTCTTGCTATGCAGAGATAGACTATCCTGGTTATACTGTCTAGTTCAAGATGT TGCAACCATTGCACCAACTCCAACTGCAACTTCATATTTTCAGTCTTTCACCCCTCATAAGTGTATACAGCCAAGAGCTT ATGGGACACCGAGGCATCTTTCGAGGGTGTTAGTACGGAGATCAAATATCATAGGAAGACATGGTCTTCTGGGAAACTGG CTAACTGCCAGATACATTAGCAATGCATCAGTTGAACTGAAGACTGGCAACGGTGTTGTCCGATTCTCTCTGGATAAGCA TGATGGTGTTAATTCTACTACGAATGGTCCGCCGAAAAAAATAAAAAAGTCTAAAAAGGCTAAAGTTAATGAACTCAGAT TCTATCGTTTGAAGGCAAAGAAAAAGATGAATTCTCCAAATCCAGAAGTTAGAATTCGATATAAGCTTGAAAAGGTTGGA ATTTCATGGTAATTTGTACTTTGATTCAGCTGCTTGCTTGGTTGTTATTGATGATCTACTTCTGTGATTTTTCTTCCTTC TGGTCTGGGTTCATACTTTTATTATGATTTGATCACTTAGTTCTTCTTCATGTTTCAGTTCTCTATTAAATGTCTGAGTA TTGTTCTGATATGTCCTGCATATATGGGCATTGAAATAACCAGAATGTTGCCTCATGTGGATTTGTATTTGAAACACCCC TGTTAAGTTTTCTCTGCCTTTGAAGGGGAAGCTTATGTGAAATTTTATTTTTCATGAAGACATTAATATTAATATTTCTC AGTTACCCTGCTTATTAGACATTAGTATAACATCACAGTATACATAATAGATATTTCTCTGTTTTAACTTGGCTTTGGTA TCTTCACCTCAGTTTACAGAAATAATTTAGTGCCTCAAATAGGCTGTATAGAGGCATTCTTCCTTTCTTCTTCAATATTT CCTTTTCTGAAACTTATTAATTTACAGGCCAAGCGAAAGGAAGTATGGTTGATTGAAAAGCTAAGGAAATTTGATATACC AAAACCCCCAGCAGAAACATTTGATCCTGAAATTTTAACTGAGGAGGAGAGACATTACCTGAAGCGCACTGGTGAGAAAA AGAAACACTATGTTCCAGTTGGGAGACGTGGAGTGTTTGGTGGGGTAGTTCTAAACATGCATCTTCACTGGAAGAATCAT GAGACTGTAAAGGTTATCTGCAAACCTTGCAAACCGGGGCAAATTCATGAATATGCTGAGGAGCTTGCTCGGCTGAGTAA AGGCATTGTGATTGACACCAAGCCCAATAATATTATCATCTTTTATCGTGGAAAGAACTATGTACAGCCAAAAGTAATGT CTCCTCCAGATACATTATCGAAAGCGAAGGTAACTTTGACTGTGCACTAGTTGTTCATTGGCAAGACATATTATGTGATA AATAATATCGTATTTTTAACTTTTTTAATTGAAATTATCGGGTTTTGGCAAGATCGGAAAAAAACAGAGTTTAGATAGAC TAATATGATATTAAAATTGATGTGGTGTATTATGAAGTACTACAAAAACCTAACCAAATAGTCCTATTTATACTATCACT AGAGTCCTAATCCTAATTAAATGTGGAACAAATAACTCCTTAAAGATGTGATAATATCCCTAAGTATAAGATAAGTTTCT AAAAGATAAGATCCCAAAATATAAGTTAGTAAAATTTGTCCTTGAAATACCGTAAAGCAGACAATTTGTCCCAAAATCTA AGTTAGTCTATTATGCATCATTCTCTTCCTCTAAAATATTTCGTAGATGCCATTTTGAAGTCAGTATTCCTTGTTTCTCC CTCTCTATTGGGCACCAGTAGAAATAATGTACTTGATGATTGGCAGTTGTCTAGCACAAGTGCATGGTAATTTGATATAT ATTCCAAAATATGAGGGTTGACACTTGAGATTATACAAGGATCTAAATCATTCAATTATAAAGAAAGCTATAACAGCAAT AGTTGGTCCTTGATGAGCATAAACTTGGAGGATAGGAATTATGTATATCATCATAGTTTTTTTATATTAATCAGGATCAT TTCATAATGCTTTTTTTGTTTTATTAAATATTCACTATATTTGACACTATGGTTAGCAATGCAAGTTTACATGCTGCTAC AGATTTATGCCTCAACATAGTAAGACTAATATGAATGTCTGGGAGTCTTTGCCTCTCACAGGCCTCATGCATGCCAGTGA GCTTTGTTTCTATTGAGGAGCTGGTCCTCTTTTATTAAGATAGATAAACCTGTATTAGTAAGCACTATGTTTGTTTTCTA AGAAAGTAAAACATCGGTGCTTTGATCGAGGGAATGATTCAATAAAAGTGCTGATTCTTAGTTTTATAGTGGAATATATT TTGCTGAGAGAGCATTGATTCTTTTTCTTTTAGCATAGAGCTTATGTTTTTTAATTATTAAAACTTAAAATTTCCAGGCG ATGGAGAAATATAGGTATGAGCAGTCCCTTGAGCATACGAGCCAGTTCATCGAGAGGTTGGAGAAAGAGCTCGAAGAGTA TCATCAGCACGTTGCAAAGTTCAAACAAGGGAAAGAGGATACAAAGATGTTAGGATCGGTACATTAGTATCTTATTCACA ATTGATATAAGTGATGCTTAATTTAGAACTTAACATGTCATAAGAAAATTCGTTTTCTTGCTTCTTTCTGTCTGTAACAA TTTCATGAATTACACAATCTGTGGTGGAATGTCAATCATCACACGGATTCTATTCCAAGATCTTATTCAGTACTTGGGAT ACCCATGATTGAAGATGGATTGCTCGAATCCATTCCCCGGATTTGCTGAAACAAAGTTTGACAAATGACATGACTTAGTT TGTAAATGATTTCGTATGGCCTTCACGGCGGAATTTTAGATTGTGATATTGCATTTATGGTAGGTGAATGGTGTTACTAT CAGTGTTACATTTCATATGGGCATTACCTTCCATGATAAGGCTACCCAATATTTATGGCGAGCTATTTGTCTTTATGCAA GTACAGATGAGAAAGATGATAGCAAGTTCTGAATTCACATTGGTAAATTGACTTGTCATAACTCATTAAGAGGATCTTCC ATGTCTCTTGCTCTTTTGTTTGTCCAATGTAGAAATGGCCTTCGGTTATGATTCATACTCAATCACAGATGATAAACAAC GAAGTTTTGTAATTATCCCTCATTTCACGGAGTCCCATTGGCCCAGGATCTCTTTACTTTGACAATGACGTTGATGGATG CTGGTGAATTATCTCAAAGCTTTAGAGATTCACACGAAAATGCTTTCTCCATACTTGTCTCCCCTTTATAGTGCCTGACA GGTATATGGACCCATATTTCAGTTCCCATCTTATCTCAAGTGTCTATTATTTGATTGCTTCTACCACAACTATACCATGT ATATCTTTTTTTTATTACGTAGAATGTGTGGACAATGGCAACAAAAGGCAACTTCTTAAGTCTGAATAGTTGGTTTAGTG CTTAAATCAGATGTTGGTTTTTGCCCAGAATGCAAAATATCATTAATTACCTACGAAAAGTAAATATGAGAAGTCATAGA CCTTTTAACCACCACCACTAATTTCTTTCCTTACCTCTTTCTAGGTTTATCCGTGTGGCCTTCCGGACTCCTGCAACAAC AATGTCGTTCCCGCCACCTAGCAAAGTCACAATGGTGGCGGTGGAGCAGATATGTGGAAGGAGTTGGTCCTCCATCGCTA CACCTTGTAGCGACGGAGCAAGTTCGCCGCCCACATGTTCATTTTCATTTTCATTCACCCTCACATTTTCATTTCCCATC ATCACTATTTGATCCTATGCACCCTAGTCGTCTGCTATAAATTATGTTTAAATTTTTTCGGTGCATGATGATATTTACTT GCTTAGTTAACATAATAACAAATATATGTGTACTGTTAAAAGCCATCTTTGATCCTGTCAAAAAAAAGAAAGAAAGTCAA CATCTAAGGCATAACAA
CDS sequence (LotjaGi4g1v0454900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCTGCAGCTTCACTCAGAGGAGCAAGACATGTCTTTTCCTGCACATTCAATAGAGATAGACTATCCTGGTTATA CTGTCTAGTTCAAGATGTTGCAACCATTGCACCAACTCCAACTGCAACTTCATATTTTCAGTCTTTCACCCCTCATAAGT GTATACAGCCAAGAGCTTATGGGACACCGAGGCATCTTTCGAGGGTGTTAGTACGGAGATCAAATATCATAGGAAGACAT GGTCTTCTGGGAAACTGGCTAACTGCCAGATACATTAGCAATGCATCAGTTGAACTGAAGACTGGCAACGGTGTTGTCCG ATTCTCTCTGGATAAGCATGATGGTGTTAATTCTACTACGAATGGTCCGCCGAAAAAAATAAAAAAGTCTAAAAAGGCTA AAGTTAATGAACTCAGATTCTATCGTTTGAAGGCAAAGAAAAAGATGAATTCTCCAAATCCAGAAGTTAGAATTCGATAT AAGCTTGAAAAGGCCAAGCGAAAGGAAGTATGGTTGATTGAAAAGCTAAGGAAATTTGATATACCAAAACCCCCAGCAGA AACATTTGATCCTGAAATTTTAACTGAGGAGGAGAGACATTACCTGAAGCGCACTGGTGAGAAAAAGAAACACTATGTTC CAGTTGGGAGACGTGGAGTGTTTGGTGGGGTAGTTCTAAACATGCATCTTCACTGGAAGAATCATGAGACTGTAAAGGTT ATCTGCAAACCTTGCAAACCGGGGCAAATTCATGAATATGCTGAGGAGCTTGCTCGGCTGAGTAAAGGCATTGTGATTGA CACCAAGCCCAATAATATTATCATCTTTTATCGTGGAAAGAACTATGTACAGCCAAAAGTAATGTCTCCTCCAGATACAT TATCGAAAGCGAAGGCGATGGAGAAATATAGGTATGAGCAGTCCCTTGAGCATACGAGCCAGTTCATCGAGAGGTTGGAG AAAGAGCTCGAAGAGTATCATCAGCACGTTGCAAAGTTCAAACAAGGGAAAGAGGATACAAAGATGTTAGGATCGGTACA TTAG
Protein sequence (LotjaGi4g1v0454900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSAASLRGARHVFSCTFNRDRLSWLYCLVQDVATIAPTPTATSYFQSFTPHKCIQPRAYGTPRHLSRVLVRRSNIIGRH GLLGNWLTARYISNASVELKTGNGVVRFSLDKHDGVNSTTNGPPKKIKKSKKAKVNELRFYRLKAKKKMNSPNPEVRIRY KLEKAKRKEVWLIEKLRKFDIPKPPAETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKV ICKPCKPGQIHEYAEELARLSKGIVIDTKPNNIIIFYRGKNYVQPKVMSPPDTLSKAKAMEKYRYEQSLEHTSQFIERLE KELEEYHQHVAKFKQGKEDTKMLGSVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 65 | 341 | 277 | 1.5E-158 | – | |
| PANTHER | 65 | 341 | 277 | 1.5E-158 | ||
| ProSiteProfiles | 192 | 289 | 98 | 19.309 | ||
| Gene3D | 193 | 292 | 100 | 7.2E-8 | ||
| SUPERFAMILY | 193 | 288 | 96 | 1.18E-22 | ||
| SMART | 194 | 278 | 85 | 1.8E-20 | ||
| Pfam | 194 | 278 | 85 | 2.2E-18 | ||
| Coils | 309 | 336 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0454900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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