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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0454900 |
Transcript ID | LotjaGi4g1v0454900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82654476..82659008) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAATCGTAAACCCAAGTCAAAGCCCTTAATAATGGCGTCGAAGATCATTTTTGTCAAAAAAAAAAAAACATACATGT GAGACCAGTGGCAGTAGAGAAAATTATTCAGGGAGCAAACATACGGTGGCCAGATCAAGTCATTGGACTGTGCTCCGGCG TCGCTGAGATTACAGGGAGGACTCAACCGGTAATTTACTTTGATCATTGATGTCTTCGTTTGGATTACTAGTTTTCTATC ATGAATAATGAGCATAACCTGTTCGACGTATGTCCTGAACCAAACCCCATGATTTTCTGCTCCCATTCAATAATTCACCA CATTCTTCATCGTTTTTCTTCTTACCCTTTTTCATTTTATGATTTTTCAGCTGGATTTTCGACTTTTATGTTTTCTGCAG CTTCACTCAGAGGAGCAAGACATGTCTTTTCCTGCACATTCAATAGGTCCATTTTTTTCCCACTTAAACAAAGCATTTAT TTTATCTGATCATATTTTTTTACTCTATTTGTGTCGTCAGTTCATTTGTTCAGTGATTAGTATTGTCTATATTCTCGCGT GCGAGGTGAGTGGAAGAAAGGAGAAGTCCTTTTGCTTCTAATGCTTGGTTGAATTTAATTTCCTGTTGCTCAACATATTT AGGCTACTCCTGAAGTCCTTTTATTCTTGCTATGCAGAGATAGACTATCCTGGTTATACTGTCTAGTTCAAGATGTTGCA ACCATTGCACCAACTCCAACTGCAACTTCATATTTTCAGTCTTTCACCCCTCATAAGTGTATACAGCCAAGAGCTTATGG GACACCGAGGCATCTTTCGAGGGTGTTAGTACGGAGATCAAATATCATAGGAAGACATGGTCTTCTGGGAAACTGGCTAA CTGCCAGATACATTAGCAATGCATCAGTTGAACTGAAGACTGGCAACGGTGTTGTCCGATTCTCTCTGGATAAGCATGAT GGTGTTAATTCTACTACGAATGGTCCGCCGAAAAAAATAAAAAAGTCTAAAAAGGCTAAAGTTAATGAACTCAGATTCTA TCGTTTGAAGGCAAAGAAAAAGATGAATTCTCCAAATCCAGAAGTTAGAATTCGATATAAGCTTGAAAAGGTTGGAATTT CATGGTAATTTGTACTTTGATTCAGCTGCTTGCTTGGTTGTTATTGATGATCTACTTCTGTGATTTTTCTTCCTTCTGGT CTGGGTTCATACTTTTATTATGATTTGATCACTTAGTTCTTCTTCATGTTTCAGTTCTCTATTAAATGTCTGAGTATTGT TCTGATATGTCCTGCATATATGGGCATTGAAATAACCAGAATGTTGCCTCATGTGGATTTGTATTTGAAACACCCCTGTT AAGTTTTCTCTGCCTTTGAAGGGGAAGCTTATGTGAAATTTTATTTTTCATGAAGACATTAATATTAATATTTCTCAGTT ACCCTGCTTATTAGACATTAGTATAACATCACAGTATACATAATAGATATTTCTCTGTTTTAACTTGGCTTTGGTATCTT CACCTCAGTTTACAGAAATAATTTAGTGCCTCAAATAGGCTGTATAGAGGCATTCTTCCTTTCTTCTTCAATATTTCCTT TTCTGAAACTTATTAATTTACAGGCCAAGCGAAAGGAAGTATGGTTGATTGAAAAGCTAAGGAAATTTGATATACCAAAA CCCCCAGCAGAAACATTTGATCCTGAAATTTTAACTGAGGAGGAGAGACATTACCTGAAGCGCACTGGTGAGAAAAAGAA ACACTATGTTCCAGTTGGGAGACGTGGAGTGTTTGGTGGGGTAGTTCTAAACATGCATCTTCACTGGAAGAATCATGAGA CTGTAAAGGTTATCTGCAAACCTTGCAAACCGGGGCAAATTCATGAATATGCTGAGGAGCTTGCTCGGCTGAGTAAAGGC ATTGTGATTGACACCAAGCCCAATAATATTATCATCTTTTATCGTGGAAAGAACTATGTACAGCCAAAAGTAATGTCTCC TCCAGATACATTATCGAAAGCGAAGGTAACTTTGACTGTGCACTAGTTGTTCATTGGCAAGACATATTATGTGATAAATA ATATCGTATTTTTAACTTTTTTAATTGAAATTATCGGGTTTTGGCAAGATCGGAAAAAAACAGAGTTTAGATAGACTAAT ATGATATTAAAATTGATGTGGTGTATTATGAAGTACTACAAAAACCTAACCAAATAGTCCTATTTATACTATCACTAGAG TCCTAATCCTAATTAAATGTGGAACAAATAACTCCTTAAAGATGTGATAATATCCCTAAGTATAAGATAAGTTTCTAAAA GATAAGATCCCAAAATATAAGTTAGTAAAATTTGTCCTTGAAATACCGTAAAGCAGACAATTTGTCCCAAAATCTAAGTT AGTCTATTATGCATCATTCTCTTCCTCTAAAATATTTCGTAGATGCCATTTTGAAGTCAGTATTCCTTGTTTCTCCCTCT CTATTGGGCACCAGTAGAAATAATGTACTTGATGATTGGCAGTTGTCTAGCACAAGTGCATGGTAATTTGATATATATTC CAAAATATGAGGGTTGACACTTGAGATTATACAAGGATCTAAATCATTCAATTATAAAGAAAGCTATAACAGCAATAGTT GGTCCTTGATGAGCATAAACTTGGAGGATAGGAATTATGTATATCATCATAGTTTTTTTATATTAATCAGGATCATTTCA TAATGCTTTTTTTGTTTTATTAAATATTCACTATATTTGACACTATGGTTAGCAATGCAAGTTTACATGCTGCTACAGAT TTATGCCTCAACATAGTAAGACTAATATGAATGTCTGGGAGTCTTTGCCTCTCACAGGCCTCATGCATGCCAGTGAGCTT TGTTTCTATTGAGGAGCTGGTCCTCTTTTATTAAGATAGATAAACCTGTATTAGTAAGCACTATGTTTGTTTTCTAAGAA AGTAAAACATCGGTGCTTTGATCGAGGGAATGATTCAATAAAAGTGCTGATTCTTAGTTTTATAGTGGAATATATTTTGC TGAGAGAGCATTGATTCTTTTTCTTTTAGCATAGAGCTTATGTTTTTTAATTATTAAAACTTAAAATTTCCAGGCGATGG AGAAATATAGGTATGAGCAGTCCCTTGAGCATACGAGCCAGTTCATCGAGAGGTTGGAGAAAGAGCTCGAAGAGTATCAT CAGCACGTTGCAAAGTTCAAACAAGGGAAAGAGGATACAAAGATGTTAGGATCGGTACATTAGTATCTTATTCACAATTG ATATAAGTGATGCTTAATTTAGAACTTAACATGTCATAAGAAAATTCGTTTTCTTGCTTCTTTCTGTCTGTAACAATTTC ATGAATTACACAATCTGTGGTGGAATGTCAATCATCACACGGATTCTATTCCAAGATCTTATTCAGTACTTGGGATACCC ATGATTGAAGATGGATTGCTCGAATCCATTCCCCGGATTTGCTGAAACAAAGTTTGACAAATGACATGACTTAGTTTGTA AATGATTTCGTATGGCCTTCACGGCGGAATTTTAGATTGTGATATTGCATTTATGGTAGGTGAATGGTGTTACTATCAGT GTTACATTTCATATGGGCATTACCTTCCATGATAAGGCTACCCAATATTTATGGCGAGCTATTTGTCTTTATGCAAGTAC AGATGAGAAAGATGATAGCAAGTTCTGAATTCACATTGGTAAATTGACTTGTCATAACTCATTAAGAGGATCTTCCATGT CTCTTGCTCTTTTGTTTGTCCAATGTAGAAATGGCCTTCGGTTATGATTCATACTCAATCACAGATGATAAACAACGAAG TTTTGTAATTATCCCTCATTTCACGGAGTCCCATTGGCCCAGGATCTCTTTACTTTGACAATGACGTTGATGGATGCTGG TGAATTATCTCAAAGCTTTAGAGATTCACACGAAAATGCTTTCTCCATACTTGTCTCCCCTTTATAGTGCCTGACAGGTA TATGGACCCATATTTCAGTTCCCATCTTATCTCAAGTGTCTATTATTTGATTGCTTCTACCACAACTATACCATGTATAT CTTTTTTTTATTACGTAGAATGTGTGGACAATGGCAACAAAAGGCAACTTCTTAAGTCTGAATAGTTGGTTTAGTGCTTA AATCAGATGTTGGTTTTTGCCCAGAATGCAAAATATCATTAATTACCTACGAAAAGTAAATATGAGAAGTCATAGACCTT TTAACCACCACCACTAATTTCTTTCCTTACCTCTTTCTAGGTTTATCCGTGTGGCCTTCCGGACTCCTGCAACAACAATG TCGTTCCCGCCACCTAGCAAAGTCACAATGGTGGCGGTGGAGCAGATATGTGGAAGGAGTTGGTCCTCCATCGCTACACC TTGTAGCGACGGAGCAAGTTCGCCGCCCACATGTTCATTTTCATTTTCATTCACCCTCACATTTTCATTTCCCATCATCA CTATTTGATCCTATGCACCCTAGTCGTCTGCTATAAATTATGTTTAAATTTTT
CDS sequence (LotjaGi4g1v0454900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCTGCAGCTTCACTCAGAGGAGCAAGACATGTCTTTTCCTGCACATTCAATAGAGATAGACTATCCTGGTTATA CTGTCTAGTTCAAGATGTTGCAACCATTGCACCAACTCCAACTGCAACTTCATATTTTCAGTCTTTCACCCCTCATAAGT GTATACAGCCAAGAGCTTATGGGACACCGAGGCATCTTTCGAGGGTGTTAGTACGGAGATCAAATATCATAGGAAGACAT GGTCTTCTGGGAAACTGGCTAACTGCCAGATACATTAGCAATGCATCAGTTGAACTGAAGACTGGCAACGGTGTTGTCCG ATTCTCTCTGGATAAGCATGATGGTGTTAATTCTACTACGAATGGTCCGCCGAAAAAAATAAAAAAGTCTAAAAAGGCTA AAGTTAATGAACTCAGATTCTATCGTTTGAAGGCAAAGAAAAAGATGAATTCTCCAAATCCAGAAGTTAGAATTCGATAT AAGCTTGAAAAGGCCAAGCGAAAGGAAGTATGGTTGATTGAAAAGCTAAGGAAATTTGATATACCAAAACCCCCAGCAGA AACATTTGATCCTGAAATTTTAACTGAGGAGGAGAGACATTACCTGAAGCGCACTGGTGAGAAAAAGAAACACTATGTTC CAGTTGGGAGACGTGGAGTGTTTGGTGGGGTAGTTCTAAACATGCATCTTCACTGGAAGAATCATGAGACTGTAAAGGTT ATCTGCAAACCTTGCAAACCGGGGCAAATTCATGAATATGCTGAGGAGCTTGCTCGGCTGAGTAAAGGCATTGTGATTGA CACCAAGCCCAATAATATTATCATCTTTTATCGTGGAAAGAACTATGTACAGCCAAAAGTAATGTCTCCTCCAGATACAT TATCGAAAGCGAAGGCGATGGAGAAATATAGGTATGAGCAGTCCCTTGAGCATACGAGCCAGTTCATCGAGAGGTTGGAG AAAGAGCTCGAAGAGTATCATCAGCACGTTGCAAAGTTCAAACAAGGGAAAGAGGATACAAAGATGTTAGGATCGGTACA TTAG
Protein sequence (LotjaGi4g1v0454900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSAASLRGARHVFSCTFNRDRLSWLYCLVQDVATIAPTPTATSYFQSFTPHKCIQPRAYGTPRHLSRVLVRRSNIIGRH GLLGNWLTARYISNASVELKTGNGVVRFSLDKHDGVNSTTNGPPKKIKKSKKAKVNELRFYRLKAKKKMNSPNPEVRIRY KLEKAKRKEVWLIEKLRKFDIPKPPAETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKV ICKPCKPGQIHEYAEELARLSKGIVIDTKPNNIIIFYRGKNYVQPKVMSPPDTLSKAKAMEKYRYEQSLEHTSQFIERLE KELEEYHQHVAKFKQGKEDTKMLGSVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 65 | 341 | 277 | 1.5E-158 | – | |
PANTHER | 65 | 341 | 277 | 1.5E-158 | ||
ProSiteProfiles | 192 | 289 | 98 | 19.309 | ||
Gene3D | 193 | 292 | 100 | 7.2E-8 | ||
SUPERFAMILY | 193 | 288 | 96 | 1.18E-22 | ||
SMART | 194 | 278 | 85 | 1.8E-20 | ||
Pfam | 194 | 278 | 85 | 2.2E-18 | ||
Coils | 309 | 336 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0454900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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