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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0455800 |
| Transcript ID | LotjaGi4g1v0455800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine-rich repeat secretory protein; TAIR: AT2G01660.1 plasmodesmata-located protein 6; Swiss-Prot: sp|Q9ZU94|CRR12_ARATH Cysteine-rich repeat secretory protein 12; TrEMBL-Plants: tr|A0A0S3QWQ9|A0A0S3QWQ9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82740533..82743991) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAGTGAGCACAATTAACAATAGGAACAATATTATTTCTCTTTTTAAGAATGCATAATAAGGAAAAAGATATTGTGT AGAGGTAGCTAGTCACATTATACATTTATACTATTAAGGTAGCATAACTTTAACCATATATAGTAGCAATTCATCCATCC ACTCTGCTTTTGAATTGTTCCCACAATCATACACTCTTCTCCTTACCTCAACTTCCTCACTTCCTTCCTGACTCCCTTAC GTAAATTCTCCTCAAAGCAACCATCACTACAACACATTCTCCCAAATTCACACAACAACAAACAACTTTAATTTGTCACC TGCTAGTGCATGCTATACATCCATCATCAGAATCATTCAATATAATTTTCTCACATCATCAAATCAAAACCTTCCTCAGA ATCATTCATATTTCACTATCTCATCATACTCACACACACACACTTTCACAAAACAACCACAAACATGGTTCTTCTTCTTC GTCTCCTCTTCATTCTCACACTCTCAGCCATCACAACCCCTTCAACTTCATCATCAATAGACACTTTCATCTTCGGCGGT TGCTCTCAGCCCAAGAACACGCCGGTTTCCGACCCCGTCTACGAAACCGGTGTCAACTCGCTCCTCACCTCCCTCGTCAA CTCAGCCTCCTTCACCAACTACAACAACTTCACCGTCCCGGCCACCGCCGGCTCCGGCGACACCCTCTACGGCCTCTACC AGTGCCGTGGGGACCTCAACAACGACCAGTGCTACCACTGCGTGGCGCGCGCGGTAAGCCAACTCGGCACCCTCTGCTCC GCCGTGCGCGGCGGCGCGTTGCAGCTGGAGGGGTGTTTCGTCAAGTACGACAACGTTAAGTTTCTTGGGGTGGAGGACAA GACTATGGTTGTGAAGAAATGTGGACCGTCGATTGGGTTGACTTCTGATGCGTTGACCCGGAGGGATGCTGTGCTGGCGT ATTTACAGACGTCGGATGGGGTTTACAGGACGTGGAGGATCAGCGCCTATGGGGATTTTCAGGGTGCGGCGCAGTGCACC GGGGATTTGAGTCCCTCCGAGTGCCAGGATTGTCTCTCTGAGTCGATCCAACGGTTGAAAACTGAGTGTGGGGCCTCCAC ATGGGGGGAGATGTACTTGGCAAAGTGCTACGCGCGCTACTCCGAAGGTGGGGATCACTCGCGCCACAGTGACGGTAAGC GGTTCCTCCTCCGCCGTACGCGGCGGTGCTTTATGACATTTTATGACTTTCGGTCATGGTACTATTTGCTTGTGCATTAC TAATCCTTTAATTTCTTATAGATAGTAGTAGTAATTAATTAAGAGATTAATGAATCTGTACTATATCCAATTACATTATG CCTCATAGGATAATGATTACATTTTTTTACACTTTAATTAAAATAAAAATAAATTTATGACTTTATTGGGTACTTGTGTG AAAATAATTTACAACTAATAACCCTGCATGAAGCTTTTTATCATTAATAAATTAGTAAGAAATGACTTTGCTTTGTTTTG AACTTTTGCTTACAAGCTGTGACTCCCCATGTGACAAGGGTATGGAAGTAGGCATGAAAAATGAGAATTATGTTCAAAAC TTTTTTATTTAAATGATCATACATACATATATACATTTCACGTGACAGCTTTTAGACACACAACTTTCATAACTATTGCA ATGCAATAATATATCTCTAAAGGATGTTGCTAGAACTTGTATGTTTCACCGATAATTTTTTATTTATGCTGTCAAAAAAA AAATTTACACAAAGCAAATTTCTTACTCAAATTTTGCTGATTAAGAAGTTGTGCATATGAATTTTCAATTATGCTTCCAC TATCCATTCTTTAGTAAAAAGTTATCTTTTTGCTCAACAAACGAGGAGATATAAAAGGGAAAAAGGAGATAAGGGAAAAA ATTGCTTTGTCTATTATATTTTGGTTCCCTTTTGTGGTTGAATAAATATACAAACATTCCAGTAACATCTATTTGACAAT GAATGCGACCCTTTGATTTTAATGAAGAATCCTATGTTGAAAAAGAGTGATCATGATCCGTGAAATGATATCATCATTTT TCATCGTCCCTGAAAAGTATTAACAAAATATAAATAGCATATACAATAAGGTAGATATGATGATAAATTATCTCTGTTTT CTAGATGTGATGTTTAAGATAATAGCTTGGTATCTTCAATAATTTTGAAGGAATTTATTTTAAGTAAAAATTATAACAGC AAATTAAATAATTACTCCCTCCGTTCCTATTTATAAGTCAATTTTACCCAATTCTCTTAGATTAAGAAAAGTAGTTACAA GTAATAAATTTGTAAAATAAATATGAGGATAGTTTTGAGAAAAAATCATTAATGCTTCATTGATATTGTAAATGGACTTA TATTTAGGAACAAGAAAAACACTCAAAATTGGTCTTATAATAAGGAACAGAGGTAGTAAAACCTTTCATATGCTGAGAGA AATTCTGAAAACATTACATCTAATTGCAATCATGCACATGTAAAAAATGCCAAAATGCAGGGCATAAGAAATCACCATAG CAGAACATAATTTCATTGTATCTAGCTTTCTTAATTAACATGAGATGTCTAATTTTCTTAATCAATTCTGCAATTTAGAT GATAGCAATCACAATGACGATGAGATTGAGAAGACACTGGCCATATTAATTGGACTAATTGCTGGGGTTGCTCTAATCAT CGTTTTTCTTTCCTTCTTGTCCAAGGTGTGCGAAAAGCAGAGAGGTATGGTTTTGTGGTACATGTAAATGTCTTTAATCA TGTTACAGGTTATAATGTTTTCTTTTCTGAACTATGCAGGTGGAAAATCATGAACAATATGTGCATAATAGTACTGGGAT TGAACTTTTGTTCTCTGGTAAATAACTTGTTTCAGTGGCTCTTTTGCTACTCCTCTAGTGTATCAGTCTCAACTTTCCTT TTTGTATTAAATTCTTCTTTTTCTCATCTTTGTAAGTTTTTCTTTTATAAAGAAAGCCAGTGAAGTATAGATAGAAAGTT GTGTATGCAAGTAGTTGCTTGAACTTGGACCCAAGTTATAGAACGGGTTGCAATAAGGAGAAAATACTCAGTTCCACTCT CTCTATGTCCACTTATTTACTTTCCAGCGTACAAATAGTGAACACTTGAAAAGTGCAGCATGATATGTTATAGCCTTTAA TTTAATGGGTATAATTAGAGTTTTTGCTTACTTTTTATGTTAGAGCATAATGACGAGCTTTACTTTCCATCCAAAAAGTT AGATTAAGACAAGGATGGTTAAATTTCTATCAAATCAATGTCTCAATTTTGTTATCATAGGCAACTTATGACCTAGTTAT TGGTCTATCGATTGTTCTTCTTTACCCTGTTTGTGTCACTCTAATTACATCAGATGCTATTTGCTAGTGCAGGTGTTAAC CAATGAATTCTAGTTCTTC
CDS sequence (LotjaGi4g1v0455800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTTCTTCTTCGTCTCCTCTTCATTCTCACACTCTCAGCCATCACAACCCCTTCAACTTCATCATCAATAGACAC TTTCATCTTCGGCGGTTGCTCTCAGCCCAAGAACACGCCGGTTTCCGACCCCGTCTACGAAACCGGTGTCAACTCGCTCC TCACCTCCCTCGTCAACTCAGCCTCCTTCACCAACTACAACAACTTCACCGTCCCGGCCACCGCCGGCTCCGGCGACACC CTCTACGGCCTCTACCAGTGCCGTGGGGACCTCAACAACGACCAGTGCTACCACTGCGTGGCGCGCGCGGTAAGCCAACT CGGCACCCTCTGCTCCGCCGTGCGCGGCGGCGCGTTGCAGCTGGAGGGGTGTTTCGTCAAGTACGACAACGTTAAGTTTC TTGGGGTGGAGGACAAGACTATGGTTGTGAAGAAATGTGGACCGTCGATTGGGTTGACTTCTGATGCGTTGACCCGGAGG GATGCTGTGCTGGCGTATTTACAGACGTCGGATGGGGTTTACAGGACGTGGAGGATCAGCGCCTATGGGGATTTTCAGGG TGCGGCGCAGTGCACCGGGGATTTGAGTCCCTCCGAGTGCCAGGATTGTCTCTCTGAGTCGATCCAACGGTTGAAAACTG AGTGTGGGGCCTCCACATGGGGGGAGATGTACTTGGCAAAGTGCTACGCGCGCTACTCCGAAGGTGGGGATCACTCGCGC CACAGTGACGATGATAGCAATCACAATGACGATGAGATTGAGAAGACACTGGCCATATTAATTGGACTAATTGCTGGGGT TGCTCTAATCATCGTTTTTCTTTCCTTCTTGTCCAAGGTGTGCGAAAAGCAGAGAGGTGGAAAATCATGA
Protein sequence (LotjaGi4g1v0455800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLLLRLLFILTLSAITTPSTSSSIDTFIFGGCSQPKNTPVSDPVYETGVNSLLTSLVNSASFTNYNNFTVPATAGSGDT LYGLYQCRGDLNNDQCYHCVARAVSQLGTLCSAVRGGALQLEGCFVKYDNVKFLGVEDKTMVVKKCGPSIGLTSDALTRR DAVLAYLQTSDGVYRTWRISAYGDFQGAAQCTGDLSPSECQDCLSESIQRLKTECGASTWGEMYLAKCYARYSEGGDHSR HSDDDSNHNDDEIEKTLAILIGLIAGVALIIVFLSFLSKVCEKQRGGKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 5 | 284 | 280 | 5.6E-118 | – | |
| PANTHER | 5 | 284 | 280 | 5.6E-118 | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Gene3D | 25 | 133 | 109 | 6.8E-24 | ||
| Phobius | 25 | 256 | 232 | - | – | |
| ProSiteProfiles | 26 | 133 | 108 | 18.381 | ||
| Pfam | 33 | 130 | 98 | 1.8E-17 | ||
| ProSiteProfiles | 134 | 237 | 104 | 12.705 | ||
| Gene3D | 156 | 235 | 80 | 2.6E-14 | ||
| Pfam | 184 | 233 | 50 | 2.7E-9 | ||
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 257 | 277 | 21 | - | – | |
| Phobius | 278 | 289 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0455800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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