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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0456600 |
| Transcript ID | LotjaGi4g1v0456600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr|A0A0L9T8E4|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82810005..82813093) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTACATCGAAGATGGTCATGTCTTCGCTGACCCACTTGCGTCCACTAACCTGCGCCGCCTCCGCATCACGAATAGT GTCTCATCCACCTGACCTTATCAACTGGGTTACCAGAGAAGGTGGCTTCGTGCACCGTGCGGTGAAGATAGCTCAGCTTG GCTCCAATGGTTTAGGACTAGTTGCTAAGCAAGAAATTCCAATGGGCAGTGAGCTTATTGTTCTTCCTCACCATATTCCT CTGCAGTTTCCCTCTCTTGATGTCAACCCTCATGACTCTGCATTGCTTCAACTGGTTCACCATGTTCCTGGTATTGTTAT GGTTCTATTTTTTTTTTTTCTCAACTTTCTTTCAATTCGAGTTATTCTATGAAATGGGCGTTAATTCAATGTAAAAAATA ATCGAATGTTTGGAAATTGAAATCTTTCTAGGTGTGTGTTAAGTTCCATGTTTGAAGCATAAACACCACTGCAATTGATT CTAAAGCCAAAATCAATCAGGGGAGAAGCTTCCTGCTTCTAGGCGCCTACGGCGCCGTAATTGATTATGAGAAAAATAAG TTGATCCAAACATGTATTGTCCTTGTTCACACATGTTAATAGAAGAGCATGTAGAGAATTTTTTTCTATTCAGTGTATGC TGGTGGCTCATGTTCTAAAAAATAGGCTCTACTACTGAGTTTTCAATGTAAATAAATTGGACACTATGGTAGCATTTGAC AGAGGAACTGTGGGCGTTAAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTTGGATCCTATTGGTGGCCATACA TCAGCAATCTCCCGATAACATACAGTGTGCCTATCTTCTTTCCTGGGGAAGACATCAAGAACCTGCAGTATGCTCCTCTT CTTCACCAGGTACTGCTCTCCTGAATTGCATAAAACCATTTAGGGCTGACTCTGATGAAACAGTAAAAACTGAAAAGTTT CTTCACCTCAGTGCAGAGGACTAGACAAGAATTGATTTTGGCAATTTTCAATTTGACAAGAGGATGAGTAGTTGATCTCC AATATAAAATGTTTCTCTAGCATCATATAGTATACATTGAAATTTTTGGAAACGTATTTTATGTCCCTTATTTTTCAAAA AAAGTAGGTTTTCTAAAGTGGATGTATTAAAACCATTTGAAATGCCTAGCTAACAAGTTTTAATGTGCCAATGCATCTAC TTCATTTTGCTATTGGGGACATGAGAGAGATGCACTTTGATTTGATCCCTGCAGCTAATTGGATCCTAATACTTGAAGGC ACATCTGTATCCAACACCATAAGCTGAATTGCCTATATGACGATCTATACCATGATGCAGGTAAACAAAAGATGCAGGTT TCTTCTTGAGTTTGAGCAAGAAGTCAAGCGTGCCTTAGCCAGTCTTACACCAGATAAGCATCCTTTTGGTGGCCTAGAAG TAGATGCACCTTCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCCGGCTGCATGGTAACAAGGATCCAAAT GGAACACACGTTGACATACCCATGATGCTCCCTCTGATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAAGATTAT TCAGGAACAAGATAGCAGTAGCACAAAGATGCAAGTGAAGGCATGTTTTCTAAATACTCTTTCCTACACACCCCAACACA CACACACATCAAATCCTGCTTATAAGAAACAAACTTATGTAGTTTTGCTGGGGTGATCCAATTTTTGCCTCAGGTTGTGG CCAAGACAACTATCAAAGAAGATGATCCTTTATTACTTTGCTATGGCAATTTAAGCAATGATCTTTTCCTTCTCGACTAT GGATTTGTGATGCACTCAAACCCTTATGACTATATTGAGCTCAAATATGATGGTGCTTTTTTGGATGCTGCAAGCACGGC TGCTGGAGTTTCTTCACCAAACTTCTCGACACCTGCTCCCTGGCAGGAACACATTTTATCTCAGCTAAACCTAGCGGGAG AAGCTCCAGATCTCAAGGTTTCTTCCTCTTAAGTCCACAATCCTGTTTTATTATCACTGTTTGAAAACAAACCAAACTAC TATTGCATCATTGCATGTTAAATTAGTGCCCTTCTGTCTTATATAAGCTTACGGTATATTGCTGCAAAGATTTAGTGTTT TCTCTGTACTTTTGATGCATCAATATCACATCCATTATTTTCAGTCCTCCCTTTTACCATAGTTCTTAAATGCCTTTTTT ATATTAAGTGTGTGTTTGGGTCAACGAATCAACGTTCTCACAATTGATTTTTTTTTTTTTGAAGTTGTTGATTTGATTTG GCAAAATTGATTATAGTAAAAGTGAGTTGAAAGTGAAGTGATTTATTTTTGGATATATTTATGGAAAAATTGGTTATTTT GTGGGGTAATGTGTTATCTAATCCAAATAAAAAATTTCATAACTGATTATGTTCGACGCAATCAAGTCTCCAAAATGATT CCCAAACATCTATACTTAGCATGTCTGGATCGGCTTCTTATTCATTAGAATCAATTTTGAAACACATAAGCTACCCACAA GCTTCTCCCCAAAATTGATTCTGCTTTATGAATAAATTGTAGAAGTGTTTCCAAACATCCATATTGTCATCCAAAATTTA TTTTCCTCTTCGTAATTGGTTATGGGGTTTTCCGATAGGCACAAGTTAATTTATTTGTTTTCTTGTAATAGGTGAGCTTA GGTGGTCAGGAAATAATAGAGGGGCGCTTGTTGGCTGCATTAAGGGCCCTCCGTGCAAGTGATGCGGAAACTGTGCAAAA GCATGACCTCAACACTCTCAAGTCTTTACATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATTGCTGTATTTCGCACCC TCATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCCAAATAGCAGATGATGAATCACTGTTGAAGCAGGGCGCT CCAGGTTCAACTGAGTTAGCCATTCAGTTCAGAATGCAAAAGAAATCTGTGATTATAGATGTTGTGAGAGATCTCTCAAG GAGGGTAAAGCTTCTCTCATCAAAGGAAACAGTGACCGCCGAGGGCTAA
CDS sequence (LotjaGi4g1v0456600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACATCGAAGATGGTCATGTCTTCGCTGACCCACTTGCGTCCACTAACCTGCGCCGCCTCCGCATCACGAATAGT GTCTCATCCACCTGACCTTATCAACTGGGTTACCAGAGAAGGTGGCTTCGTGCACCGTGCGGTGAAGATAGCTCAGCTTG GCTCCAATGGTTTAGGACTAGTTGCTAAGCAAGAAATTCCAATGGGCAGTGAGCTTATTGTTCTTCCTCACCATATTCCT CTGCAGTTTCCCTCTCTTGATGTCAACCCTCATGACTCTGCATTGCTTCAACTGGTTCACCATCATTTGACAGAGGAACT GTGGGCGTTAAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTTGGATCCTATTGGTGGCCATACATCAGCAATC TCCCGATAACATACAGTGTGCCTATCTTCTTTCCTGGGGAAGACATCAAGAACCTGCAGTATGCTCCTCTTCTTCACCAG GTAAACAAAAGATGCAGGTTTCTTCTTGAGTTTGAGCAAGAAGTCAAGCGTGCCTTAGCCAGTCTTACACCAGATAAGCA TCCTTTTGGTGGCCTAGAAGTAGATGCACCTTCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCCGGCTGC ATGGTAACAAGGATCCAAATGGAACACACGTTGACATACCCATGATGCTCCCTCTGATTGACATGTGTAATCATAGTTTC AATCCAAATGCTAAGATTATTCAGGAACAAGATAGCAGTAGCACAAAGATGCAAGTGAAGGTTGTGGCCAAGACAACTAT CAAAGAAGATGATCCTTTATTACTTTGCTATGGCAATTTAAGCAATGATCTTTTCCTTCTCGACTATGGATTTGTGATGC ACTCAAACCCTTATGACTATATTGAGCTCAAATATGATGGTGCTTTTTTGGATGCTGCAAGCACGGCTGCTGGAGTTTCT TCACCAAACTTCTCGACACCTGCTCCCTGGCAGGAACACATTTTATCTCAGCTAAACCTAGCGGGAGAAGCTCCAGATCT CAAGGTGAGCTTAGGTGGTCAGGAAATAATAGAGGGGCGCTTGTTGGCTGCATTAAGGGCCCTCCGTGCAAGTGATGCGG AAACTGTGCAAAAGCATGACCTCAACACTCTCAAGTCTTTACATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATTGCT GTATTTCGCACCCTCATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCCAAATAGCAGATGATGAATCACTGTT GAAGCAGGGCGCTCCAGGTTCAACTGAGTTAGCCATTCAGTTCAGAATGCAAAAGAAATCTGTGATTATAGATGTTGTGA GAGATCTCTCAAGGAGGGTAAAGCTTCTCTCATCAAAGGAAACAGTGACCGCCGAGGGCTAA
Protein sequence (LotjaGi4g1v0456600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSKMVMSSLTHLRPLTCAASASRIVSHPPDLINWVTREGGFVHRAVKIAQLGSNGLGLVAKQEIPMGSELIVLPHHIP LQFPSLDVNPHDSALLQLVHHHLTEELWALKLGLKLLQERAKVGSYWWPYISNLPITYSVPIFFPGEDIKNLQYAPLLHQ VNKRCRFLLEFEQEVKRALASLTPDKHPFGGLEVDAPSLGWAMSAVSSRAFRLHGNKDPNGTHVDIPMMLPLIDMCNHSF NPNAKIIQEQDSSSTKMQVKVVAKTTIKEDDPLLLCYGNLSNDLFLLDYGFVMHSNPYDYIELKYDGAFLDAASTAAGVS SPNFSTPAPWQEHILSQLNLAGEAPDLKVSLGGQEIIEGRLLAALRALRASDAETVQKHDLNTLKSLHAEAPLGVANDIA VFRTLIALCVIALGHFPTQIADDESLLKQGAPGSTELAIQFRMQKKSVIIDVVRDLSRRVKLLSSKETVTAEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Gene3D | 3 | 291 | 289 | 7.4E-53 | – | |
| PANTHER | 22 | 469 | 448 | 4.5E-75 | – | |
| PANTHER | 22 | 469 | 448 | 4.5E-75 | – | |
| SUPERFAMILY | 31 | 296 | 266 | 2.62E-47 | – | |
| SMART | 46 | 284 | 239 | 4.8E-9 | ||
| ProSiteProfiles | 46 | 278 | 233 | 10.184 | ||
| Pfam | 57 | 278 | 222 | 1.4E-10 | ||
| SUPERFAMILY | 288 | 467 | 180 | 1.02E-21 | ||
| Pfam | 329 | 448 | 120 | 1.3E-13 | ||
| Gene3D | 329 | 468 | 140 | 8.6E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0456600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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