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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0457900 |
| Transcript ID | LotjaGi4g1v0457900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TAIR: AT1G48520.1 GLU-ADT subunit B; Swiss-Prot: sp|B9SQR9|GATB_RICCO Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1KQC8|I1KQC8_SOYBN Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Found in the gene: LotjaGi4g1v0457900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82909981..82914534) extracted from Lotus japonicus Gifu genome v1.2.
CCCACAACTCTAAAAGGATAAAATTTGCAGAAGAAAAATTGTCCAAATTTCTACACTCTTGAATAGTCATTTTGGAACGC TTGCAGTAGATATAGCCATCATTCCGCACCACTAGCCATCGTGAGCAACCCTCCCACATTAGTGGCTTCGATTTTTAACG CTGTTCAGTTCCTTCCAGAATGGCTTCCACAATCTTCAGAACCTTCCAACTTCACCCCTTTCTGCTTTGTCCAGCATCAT TTCTCAGAACAACAAATGGGGTGGTTTTGCGCTGCGCATCATCAGACACCCAACAGCGGCAACCACAAACCAAGGTTTCA ACCCAGTACAAGAAACTTGACAAAATCCCAAAAGACTATGAAGCTGTCATTGGCATTGAAACCCATGTTCAGCTCTCTAC TCTCACCAAAGCATTCTGTGGTTGCCCTTATAGTTATGGGTCACCTCCCAATACCACTGTCTGTCCTGTTTGTATGGGCT TGCCTGGTGCTTTGCCTGTTTTGAACTCCAAGGTTATTGACTTTGCTGTCAAGCTGGGCCTTGCTCTTAACTGTAACTTG TCTTTCAACTCCAAGTTTGATAGGAAGCAGTATTTCTACCCTGACCTTCCTAAAGGGTATCAGATTTCTCAATTTGATGT GCCTATTGCTGCTGGTGGCTACCTTCATGTGGATATTCCACTGGAGTTTGGTGGAGGCCACAGGAAGTTTGGCATTACAA GGGTTCACATGGAAGAGGATGCTGGGAAGCTCCTACATACAGAGAATGAGAATTACTCTCAGGTAGTGTCTTTATCCCTT CTTTCAGCTTGCAGCTTCCAATTCTTATTTAACATATATTTTTCCTTGCTTCTATCTTTAACGTGTTTACCAGTGGCAGA CTGCATTTGTTCATTGAGGCATTTATATTTATGTGAAGTTTAAACAAAAACTCATGTCAGACCAGTTTCACACATTTCTT GGTTTGTAATTCATGTTCTGGAAACACATAAATGCTTTGTTCCACTCATTTTCCTGAATTATTGGCAAAGGTTCAACAAC CTATAGCAATGCTATAACTATGCTAAAGTGATGGTCTTTCATGACAGGTTGATCTAAATAGGGCAGGGGTGCCTTTGCTT GAGATAGTTTCTGAGCCTGACATGAGAAACGGTATTGAAGCGGCAGAATACGCAGCAGAAATACAGAGATTGGTACGATA TTTAGGAGTGAGCAATGGCAATATGCAAGAAGGTTCTCTTCGTTGTGATGTAAATGTATCAATACGGCCCATTGGGCAAT CAAAGTTCGGGACAAAGGTATCTAGCTATTTCTTCTATTAAAACAATTAGAGGCTTTTAATACATATTGCTAGACTTTTG GAATTGGCACTATGTTATTATTAGGAAGCTTGTTTGTCTAGGTATTGGAATTGCATGGAGACTTAGATGATAGTTTTCAA TGTTGTACCTACTCTGATTAGACATTATAATGAGAGAATGTGGGCTAAGTCAAATTGTCAAAAAAAAAATCTCTGCACAT CTAAGGATGAGAGATGTGAAGGATATAATGACAGTTATTACTGCATTATATGCTGTTTTCCTTGTCTGACTTATCATGCA TTTATATTACCCTTTTGATCATGCCAGAAACCCAGAATAAGTTGTTGGATGTTAATTCATGGGTTCTGTTTTGCCAAGGC CTGACTTGCATGATAATGATAGTCACTGTCCTTTTCAGGCCATATGATGGAATACATTGGAGTTTTAATATTGTGTGTGT TAGAAGTCTTTGTAAGAAGTAAAGTGCATGGAAGGTATTTTCTGAAGTGATAAGTATGGTTTTGATTTTCTTTGAAAACA AGTAACTGCACATAATTTTGGGCTTTTATTGACCTTAAAGAATACAATGAAGAGCAATTGTTACAAACTGGTCTTGTGGA TAGAAAATTGATTTGTCTATCATATTGATACTCTTTAAAATTGGTTGATCCTTGCTTTTTGCAGAAATTAAGTACCACAA CTTGATACTATTATTGCCTTTTGTTGCAATGCAGTATTAGAGAGTCCAATATGTTGACCTAACTAGCAGCTAATATGTTA AATTGCTCTGGCAGGTTGAAATAAAAAATTTGAACTCATTTTCAGCAGTAAGCAGAGCTATTGATTTTGAAATTGCAAGG CAGGTGCAACTCCATAGTAATGGCCAGGAAGATCAGATAGTACAGGAAACTCGTCTATGGGAAGAAGGCTCTCAGGCTAG TACTATATCGTGATTTTGTTCTTATTTGCCTTCTAGATAGTGTAGCACGTACAGGATAGTATTATCTTCCCTTATACTAA CTTTCTTTAATAACTTCTGTTATTCTGTTAAGAGAACAATTACAATGAGGATAAAGGAAGGGCTCGCTGATTATCGGTAT TTTCCCGAACCAGACCTTCCAGCTGTAATCGTTTCCCAGGAATATGTTGATGGTATTCGAAATTCTTTACCAGAGCTTCC AGAAGAAAAGCGTAGAAGATATGAAAAGATGGGCTTAAGCATGCAAGATGTTCTCTTCTTGGCTAATGATCAAAATGTAA GTTATCTGCTCTGTTTTCTGAGGTTATAAACTGTTTACCTTTGTGATGCACATGATTGAAGTAAATATTAGGGAAGTTTA TTACCACAACTGGTCTAATATGATTTTTATTTTCTGAATGGATTTATTAGATTGCAGAATTTTTTGATGCTACTCTTGCA AAGGGTGCTGATGCAAAGCTAGTTGCCAACTGGATAATGAGTGATATTGCTGCCTTCATGAAAAATGAGAAGTTGAGCAT AAATGAAATAAAACTTACGCCTGAAGAGTTGTCTGAGTTGATAGCTTCCATTAAAGGTGGAATCATCACTGGCAAGATCG GGAAGGAGGTATAGTTGGCTCTGGCACCAACAAGTGGTGAATAATTAGGATCTAAGCTTAAATCATTCGCATACCTGATT TTGAAACATTAAGCTTTAGCCAGGAGTTATACTGTTTTATTTTTAACATATCTTCTAGTTTTTTTCTCATTTTTTTCCAG TGGGAGTTAATTGTGTTTGTGTATTAATGAACCTAAGGATTTCATTTATAAAATATGTTGACTTCGGAAGTCTTAATTTT TGGATCCTTTATGATCTGAGCTTTACTATTTTGGTCCTGTTAGAAACATCTACTGTTGTGTCTTGGTTGAATGTGTCATG TAAATGTAGTAAATAGGAAGATTTGATCTTTGTACTTATTACATCCATTCAACATATGCTTCTCTTTTTCTTTCACAACA ATTCCATTCCTTTTCAGATACTATTTGAGCTATTAGCCAAGGGTGGCAGTGTCAAGGAACTCATAGAGAAAAAGGACTTG GTTCAGGTCAGTAGTAACATCAACCATTATTGAAATTTTTAAATTGAGTCAGTTAGCAAGGGACAACTGATCTTTTGGAT ACTAAAGCATAAATTTGCTAGTTTATGGGTTCACTTGTGAATTTCATTACAGGATTATTCTGATTTTGTGTTATTTGAGA TGTTACTACTTGTATTTGAAAAACAAAACTGTAGAAGCATAAAGTTGCCTATGTTTTTGGGTCAGTTGCAAATTTAATAA CTTCACTGGATTATTTGGATTTTATGATGTTATTTGTTATTTTAAAAGCACAAATTCCGAGGTGGTTTGAACAATTAGTG TTAGGCCTCTTCTCAGTGACTGCACTATCGGTGCTTTATTTGTTCTTGCTGAGAAAGGAAAAAAGAAAATGTTAGAATGT GCTTGTGACATTTGGAAATGACAGATAGCAGATCCTGCTGAGATTGAAAAAATGGTGGACAAAGTGATTGCTGAGAATCC AAAACAAGTAGAGCAATATCGAGGAGGGAAAACTAAACTGCAAGGCTTTTTTGCTGGCCAGGTATTAACTCGTACAGCCT GAAACCATTATTATGTTTGCCCCTTTTAATTATCTTAATATCATATATATTTGTTCAAATAGGTAATGAAGTTATCTAAA GGCAAGGCAAATCCTGGTCTCCTTAACAAGATCCTCTTGGAGAAATTGAATTCAAAGAGCTGATGCATGCTACACGCTTT TTAGTCATGAGAAAGATATAGACATACATTTTCCAATTCGATGCATGGCTTCTTGCTGAGTTCATGGTAAGTGCTGATCC CTGATAATATCCAGCCAGTAGACAAATGAAAAATTAAAATTGGAAGGTTCTTGTGTTGCTCATTGCAAGCTGAGGTGATT GGTTATATTGACTAAAATATTTTATCCGATTGTAGAAATAGATTCTGAAGGTTTTCCACATCAGCTATTGAGACTTGGGT GCTCTGTCCTTGTTTTCTTCTGCAGAGGACATAACCATTATCTGAGGTGATTTAAAAGGACATGCAGCTTCTCAACCATG CGGTTGATATCTCAAGTTAATTGATGGCTTCAAAATTTCTTGATGTATCTCAATGTATTTTGATTTTAGAATGAGAATAA TTTAATATTCTCTCTTTTGCTCATACAATAACAAGAGAGCATACGTGTACCTTTTGCACAATTGGCAGTTTTTG
CDS sequence (LotjaGi4g1v0457900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCACAATCTTCAGAACCTTCCAACTTCACCCCTTTCTGCTTTGTCCAGCATCATTTCTCAGAACAACAAATGG GGTGGTTTTGCGCTGCGCATCATCAGACACCCAACAGCGGCAACCACAAACCAAGGTTTCAACCCAGTACAAGAAACTTG ACAAAATCCCAAAAGACTATGAAGCTGTCATTGGCATTGAAACCCATGTTCAGCTCTCTACTCTCACCAAAGCATTCTGT GGTTGCCCTTATAGTTATGGGTCACCTCCCAATACCACTGTCTGTCCTGTTTGTATGGGCTTGCCTGGTGCTTTGCCTGT TTTGAACTCCAAGGTTATTGACTTTGCTGTCAAGCTGGGCCTTGCTCTTAACTGTAACTTGTCTTTCAACTCCAAGTTTG ATAGGAAGCAGTATTTCTACCCTGACCTTCCTAAAGGGTATCAGATTTCTCAATTTGATGTGCCTATTGCTGCTGGTGGC TACCTTCATGTGGATATTCCACTGGAGTTTGGTGGAGGCCACAGGAAGTTTGGCATTACAAGGGTTCACATGGAAGAGGA TGCTGGGAAGCTCCTACATACAGAGAATGAGAATTACTCTCAGGTTGATCTAAATAGGGCAGGGGTGCCTTTGCTTGAGA TAGTTTCTGAGCCTGACATGAGAAACGGTATTGAAGCGGCAGAATACGCAGCAGAAATACAGAGATTGGTACGATATTTA GGAGTGAGCAATGGCAATATGCAAGAAGGTTCTCTTCGTTGTGATGTAAATGTATCAATACGGCCCATTGGGCAATCAAA GTTCGGGACAAAGGTTGAAATAAAAAATTTGAACTCATTTTCAGCAGTAAGCAGAGCTATTGATTTTGAAATTGCAAGGC AGGTGCAACTCCATAGTAATGGCCAGGAAGATCAGATAGTACAGGAAACTCGTCTATGGGAAGAAGGCTCTCAGAGAACA ATTACAATGAGGATAAAGGAAGGGCTCGCTGATTATCGGTATTTTCCCGAACCAGACCTTCCAGCTGTAATCGTTTCCCA GGAATATGTTGATGGTATTCGAAATTCTTTACCAGAGCTTCCAGAAGAAAAGCGTAGAAGATATGAAAAGATGGGCTTAA GCATGCAAGATGTTCTCTTCTTGGCTAATGATCAAAATATTGCAGAATTTTTTGATGCTACTCTTGCAAAGGGTGCTGAT GCAAAGCTAGTTGCCAACTGGATAATGAGTGATATTGCTGCCTTCATGAAAAATGAGAAGTTGAGCATAAATGAAATAAA ACTTACGCCTGAAGAGTTGTCTGAGTTGATAGCTTCCATTAAAGGTGGAATCATCACTGGCAAGATCGGGAAGGAGATAC TATTTGAGCTATTAGCCAAGGGTGGCAGTGTCAAGGAACTCATAGAGAAAAAGGACTTGGTTCAGATAGCAGATCCTGCT GAGATTGAAAAAATGGTGGACAAAGTGATTGCTGAGAATCCAAAACAAGTAGAGCAATATCGAGGAGGGAAAACTAAACT GCAAGGCTTTTTTGCTGGCCAGGTAATGAAGTTATCTAAAGGCAAGGCAAATCCTGGTCTCCTTAACAAGATCCTCTTGG AGAAATTGAATTCAAAGAGCTGA
Protein sequence (LotjaGi4g1v0457900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTIFRTFQLHPFLLCPASFLRTTNGVVLRCASSDTQQRQPQTKVSTQYKKLDKIPKDYEAVIGIETHVQLSTLTKAFC GCPYSYGSPPNTTVCPVCMGLPGALPVLNSKVIDFAVKLGLALNCNLSFNSKFDRKQYFYPDLPKGYQISQFDVPIAAGG YLHVDIPLEFGGGHRKFGITRVHMEEDAGKLLHTENENYSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAEIQRLVRYL GVSNGNMQEGSLRCDVNVSIRPIGQSKFGTKVEIKNLNSFSAVSRAIDFEIARQVQLHSNGQEDQIVQETRLWEEGSQRT ITMRIKEGLADYRYFPEPDLPAVIVSQEYVDGIRNSLPELPEEKRRRYEKMGLSMQDVLFLANDQNIAEFFDATLAKGAD AKLVANWIMSDIAAFMKNEKLSINEIKLTPEELSELIASIKGGIITGKIGKEILFELLAKGGSVKELIEKKDLVQIADPA EIEKMVDKVIAENPKQVEQYRGGKTKLQGFFAGQVMKLSKGKANPGLLNKILLEKLNSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 540 | 513 | - | – | |
| PANTHER | 48 | 537 | 490 | 3.4E-291 | – | |
| PANTHER | 48 | 537 | 490 | 3.4E-291 | ||
| Hamap | 59 | 537 | 479 | 37.646 | ||
| TIGRFAM | 59 | 537 | 479 | 5.9E-180 | ||
| SUPERFAMILY | 61 | 358 | 298 | 4.45E-116 | ||
| Pfam | 62 | 350 | 289 | 3.4E-110 | ||
| ProSitePatterns | 204 | 218 | 15 | - | ||
| Gene3D | 359 | 475 | 117 | 1.3E-31 | ||
| SUPERFAMILY | 388 | 537 | 150 | 1.96E-28 | ||
| Pfam | 389 | 536 | 148 | 1.1E-50 | ||
| SMART | 389 | 536 | 148 | 2.3E-70 | ||
| Gene3D | 476 | 539 | 64 | 4.2E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Ligase activity | Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. | ||
| Molecular function | Carbon-nitrogen ligase activity, with glutamine as amido-N-donor | Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction. |
Expression pattern of LotjaGi4g1v0457900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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