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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0460600 |
| Transcript ID | LotjaGi4g1v0460600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|P0CM47|PALA_CRYNB pH-response regulator protein palA/RIM20; TrEMBL-Plants: tr|I3STV9|I3STV9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0460600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83134378..83135762) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTTGATATTTAGGAAGATCAAGTGTATAATTGGAAAAGAAAACTCAACAGAAGAAACACTTAAGAGCACATTCTGA ACGTTAGGTAATTGATGCTTCATTGTTGCTTCAATGTGCTTTCCTTAAAACTTAGTGTTTGCTGCTTACTGGTAAGGGTG TGATACTAGGCTTGTCTTTGATTGAGGGTGTGTTTGGAAGAGCTCATTTGAGTTTATCTTATACGGTTATACCATAAGCG CCTTATTTGAGAGCTTATGAAAATAGCTAATAGCCTAATAACCTATCTACTAGCTATTTTGAATTTATTTTCATAAGCTG CTCAAATTAGCTTATGAATAAGCGCTTATAACCTATAAGCTATTTGTAACTTATTTGATTAAGCTTATCAAAATAGCTGA TGTGGTAAGCACTTATGTGATAAGCACTTGTTCCAATAAGCGCTTAACTAAGTTGTTTACCCAAACGCACCATGAATATC CTTGTTATTTGGTCTTTTGAGGTTCTGATTTTGTGCAACATTGTCTTCATGTTTTTTTCCTCGCTTTTCTCATTCATCAA ACCCCCCTCACCTTCAGAAATCATTTTGGCAAGCTGTGAACATAATTTCTTGAATTAATTCCATTGCAATAATTTCAGGA TACCGCGAAGAATGGGGTCTTAGCTGTTCAAACTATCCGCAACAATATCATGGCATCCACTCTTCTTGCTACAACAGCAA TCACACTCACTTCACTGATTGGTATTTTTGCTAGCAATGCATGGAATACTGATGACACTGCTCCCATTCTTTACAGTATT TCTTCAATGAAACGTATTTCTATCACCGTATGCTTCCTTGTTGCATTCTTATGCAATGTGCAGTCTATAAGATGCTATGC CCATGTAAGCTTTTTGATCAATGCACCTACACTCAGAGACAAAAGAGAATACATGGAATACATTACAAAAACGTTGAACC GTGGAAGCCATTCTTGGTCCCTTGGATTGAGAGCATTCTACTTGTCATTTCCTCTGTTCCTCTGGATTTATGGACCCATA CCCATGTTTGTTTGTTGTTGTTTGACATCATTTATTTTGTACTTCTTGGATACAACAGCTAAAATCGCAAGGGATCTTCA CAGCAACTCATTCAGGAAGGAGAGGGGAACTCATGATGTGGAATCTGCAGTGGAGCCTGATTACCATCCTTTAGCTGGTA ACAATTTGTCTTAAGAAACAAGTGTGGATCATGTATAAATAATTAAACATGTAGCAATATTGGTATTAAGTAGTAGTTTT TGCTCTTGATTTTATAGTAGTGAAACTGGATTGAATGCGCAAAACATATTTACACTTTCAGTGCATTGTTGTTAAACTCA ATAAATCACCAAGCTTGTAGATCAA
CDS sequence (LotjaGi4g1v0460600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCACTCTTCTTGCTACAACAGCAATCACACTCACTTCACTGATTGGTATTTTTGCTAGCAATGCATGGAATAC TGATGACACTGCTCCCATTCTTTACAGTATTTCTTCAATGAAACGTATTTCTATCACCGTATGCTTCCTTGTTGCATTCT TATGCAATGTGCAGTCTATAAGATGCTATGCCCATGTAAGCTTTTTGATCAATGCACCTACACTCAGAGACAAAAGAGAA TACATGGAATACATTACAAAAACGTTGAACCGTGGAAGCCATTCTTGGTCCCTTGGATTGAGAGCATTCTACTTGTCATT TCCTCTGTTCCTCTGGATTTATGGACCCATACCCATGTTTGTTTGTTGTTGTTTGACATCATTTATTTTGTACTTCTTGG ATACAACAGCTAAAATCGCAAGGGATCTTCACAGCAACTCATTCAGGAAGGAGAGGGGAACTCATGATGTGGAATCTGCA GTGGAGCCTGATTACCATCCTTTAGCTGGTAACAATTTGTCTTAA
Protein sequence (LotjaGi4g1v0460600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTLLATTAITLTSLIGIFASNAWNTDDTAPILYSISSMKRISITVCFLVAFLCNVQSIRCYAHVSFLINAPTLRDKRE YMEYITKTLNRGSHSWSLGLRAFYLSFPLFLWIYGPIPMFVCCCLTSFILYFLDTTAKIARDLHSNSFRKERGTHDVESA VEPDYHPLAGNNLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 137 | 137 | 1.1E-43 | ||
| PANTHER | 1 | 170 | 170 | 4.3E-79 | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 170 | 170 | 4.3E-79 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 108 | 84 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 109 | 133 | 25 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 134 | 174 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0460600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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