Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0463500 |
| Transcript ID | LotjaGi4g1v0463500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-25; TAIR: AT1G18200.1 Rab GTPase-like A1I protein; Swiss-Prot: sp|Q9C9U7|RAA6A_ARATH Ras-related protein RABA6a; TrEMBL-Plants: tr|A0A1J7FNT8|A0A1J7FNT8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0463500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83357382..83359771) extracted from Lotus japonicus Gifu genome v1.2.
TTGATGATGGCTGATGCATTTGATGAAGAGTGTGATTATCTGTTCAAGACTGTGTTGATTGGTGACTCTGGAGTTGGGAA ATCAAATCTGCTGTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCGAAGCCCACTATTGGAGTTGAATTTGCTTACA GTAATATCAAGGTCAGAGACAAACTCATCAAAGCTCAGATATGGGATACTGCCGGCCAAGAGAGGTGAGGTCACTCTGGT ATTCCTCTGTTTCTTCTTTCATCATTGCCTCATTGGTCAAGTTTTACTTTCTTGTCTCTTTGTTGGTCATCACTTTTAAC TTTTATTTATTCATTTTTCTTGCTTTGTTTGTTCGTTTTGCTTTCTTACTCTTTGATCGTTATTTCAAAAAAAAAGTTTG AATGATAATTCATCATGGTTTAAGCTTATAGATCAGAATTCAGTTGCATGGTAGATCTTTCTTCTTTCTCACTTGATTCT GTGTTATGTTTCTTTCGTGTTGTGTCCTGTTTTGATTCTTCCAGTGAAAGGTTAAGGCCTTTTCTTTACTTGCGTTTCAA TTTCAAACTGGCTTGCTACATACATGTACGACATTTCCTCACCCCCTCCAACAAACTTCCTCATACTTCCCAGGACCAGG ACGTGAGGGGTGATGAAATCTCCTATGTGTACATCCCGAGCTAAATCCAGAGGTGGTGACACCTCGGTGTTACATACCCA ACCTAGAAGATGTTGATGTTGTTAGGCTTTTATTCTCTTGTTTATTGGCCTAAAATTAATATAGAAAAAACAGATGGGGA GGGATGGATGAACTTTTTTAAAATCTGTGCACTGTTCATCCGTGATGATCTCAGATTCTCAGTGATTTGATAATTTACGA AAAACATAACTAGATTTATTTCATTCAGTGGGACCCCTGAAGACACTGAGATTAACATGGACTGGATTCCTAGTTTTGAT TTGGATTAATGTGTTGTTTGATTCAGAAAAAAAACTTGTTCACGGAAAGGAACACTGCATGTTAAAAAAAGTGTCTTCCC TCTCGCCGTGATTTCCTCCTTTAATTTTCTTTGGATGCTTCATGTATTTAACTTTTGTCCTTTTCCAACTAATTAAAGGG AAATTTCTATATATTTGAATAACAACATTTGCCCTTCATTAAAATTGCTTTTTCCTTGCCACATCTCATAAAAAGAAGTT CACTATTTTGGGCCGCATGCGCGCAATTTCAATTCCTATCTCTTGTTTTTTATATTCCTTGCACTTTCATTTCATCATGA GAAAAGCAGAAAGATGTTCATCTTTCTCTGCAGATGCTAGATTTCTAGCTAATTAAGTACAGTTGAATAATGAATGAACA TGCCACTGTACTGTGTTCCATTAATGATGTGAATAATGAAAAATAATTAACTTGAAAGAGTAGTGGTAACGCAATTGATC TTTAGATAGCGTAACTATTGGGCAAATTGGCAATCAATGATCGAGTCAGGTGTAGAAATGCATGTGAGATGATGGTGAAG GTTGTGATGGTGCCAAGTGCCAACCACATAATCAAATTCAAACTAGTTCTTCTTTCTAATCATGTCAAACATCTTAGGCA TATTCTAGTCTTAGGAGACAGTCTTCAGACAGATAATTATGAAATCTCACAAAATGACTATGTTAATTACATAAGTTATT ATCTCAAGCTTTTCCGCATAATTAATTTTGAGAGTAATATGAATTTTTGAAAATCGATTGTCAATATCAATATAACTACC CTAAAAAGTGATTCTGATAAAAGGAGAAGTGATTCTTAGGCTAACCAACGCGAACCAAATTCACACATAAGTTTTAGCTT TTAAGTGAAACTGCATTTGATAATTATGTGCAAATTGTGAAATCAAACATTCACTTATATTTTGATCTAACAAGGAAAAT GCTAAATATTATGTGGATAAAATTATATATGTGGCAGGTTCAGAGCAATCACAAGCTCGTATTACAGAGGAGCCTTGGGG GCAATGGTGGTGTATGACATAACGAGGCGATCAAGCTATGAGAATGTAAGAAACTGGTTATTGGAGCTGAGAGAGTTTGG TGGGGAAGACATGGTGGTTATTCTGGTGGGAAACAAAAGTGATCTGGGTCAATCAAGAGAAGTTGAGAAGGAAGAAGGTA AAGGGTTTGCAGAGACAGAAGGGTTGTGTTTCATGGAAACCTCTGCTCTGAAGAATCTGAACGTTGAGGAAGTGTTCTTA GAAATGATTACAAAGATACTTGACATCACATGCCAGAGAAGTTTGGAAGCCAAAGTTGACGAGAAACCGATTAATGTTTT CAGTGGGAAGGAGATTCATCTAGTGGATGAAGTCACTGCAACTAAACAAGCCACTTGCTGTTCAACATAA
CDS sequence (LotjaGi4g1v0463500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTGATGCATTTGATGAAGAGTGTGATTATCTGTTCAAGACTGTGTTGATTGGTGACTCTGGAGTTGGGAAATC AAATCTGCTGTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCGAAGCCCACTATTGGAGTTGAATTTGCTTACAGTA ATATCAAGGTCAGAGACAAACTCATCAAAGCTCAGATATGGGATACTGCCGGCCAAGAGAGGTTCAGAGCAATCACAAGC TCGTATTACAGAGGAGCCTTGGGGGCAATGGTGGTGTATGACATAACGAGGCGATCAAGCTATGAGAATGTAAGAAACTG GTTATTGGAGCTGAGAGAGTTTGGTGGGGAAGACATGGTGGTTATTCTGGTGGGAAACAAAAGTGATCTGGGTCAATCAA GAGAAGTTGAGAAGGAAGAAGGTAAAGGGTTTGCAGAGACAGAAGGGTTGTGTTTCATGGAAACCTCTGCTCTGAAGAAT CTGAACGTTGAGGAAGTGTTCTTAGAAATGATTACAAAGATACTTGACATCACATGCCAGAGAAGTTTGGAAGCCAAAGT TGACGAGAAACCGATTAATGTTTTCAGTGGGAAGGAGATTCATCTAGTGGATGAAGTCACTGCAACTAAACAAGCCACTT GCTGTTCAACATAA
Protein sequence (LotjaGi4g1v0463500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTAGQERFRAITS SYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKN LNVEEVFLEMITKILDITCQRSLEAKVDEKPINVFSGKEIHLVDEVTATKQATCCST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 190 | 187 | 1.4E-100 | – | |
| PANTHER | 4 | 190 | 187 | 1.4E-100 | – | |
| Gene3D | 6 | 215 | 210 | 1.1E-64 | – | |
| SUPERFAMILY | 9 | 190 | 182 | 9.88E-58 | ||
| ProSiteProfiles | 9 | 215 | 207 | 33.666 | – | |
| CDD | 11 | 174 | 164 | 4.31458E-107 | – | |
| SMART | 11 | 177 | 167 | 1.6E-21 | – | |
| TIGRFAM | 13 | 167 | 155 | 6.9E-32 | ||
| PRINTS | 14 | 35 | 22 | 1.7E-39 | – | |
| SMART | 14 | 177 | 164 | 1.6E-102 | – | |
| Pfam | 15 | 175 | 161 | 8.6E-60 | ||
| SMART | 16 | 177 | 162 | 1.2E-11 | – | |
| SMART | 19 | 202 | 184 | 3.8E-8 | – | |
| PRINTS | 37 | 53 | 17 | 1.7E-39 | – | |
| PRINTS | 55 | 77 | 23 | 1.7E-39 | – | |
| PRINTS | 117 | 130 | 14 | 1.7E-39 | – | |
| PRINTS | 152 | 174 | 23 | 1.7E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0463500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…