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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0464700 |
| Transcript ID | LotjaGi4g1v0464700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ERAD-associated E3 ubiquitin-protein ligase component HRD3A; TAIR: AT1G18260.1 HCP-like superfamily protein; Swiss-Prot: sp|Q9LM25|HRD3A_ARATH ERAD-associated E3 ubiquitin-protein ligase component HRD3A; TrEMBL-Plants: tr|G7LE71|G7LE71_MEDTR Sel1 repeat protein; Found in the gene: LotjaGi4g1v0464700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83480332..83483821) extracted from Lotus japonicus Gifu genome v1.2.
CAATCCAATGCTCACCGTCAAATTCCTTTTCTCTCTACTCCTCACCTTCTCTCTCCTCTCCGTCTCCGTCACCGTCACCG CCCGTCCCTTCGTCCTCGTCCTTTCCCAGGAAGACTTCAAGGACGAAGCCCCCACCGATTCCGACTCCGCCGCCGAGTGG GACGACTTCGGCGACTCCGACCCCCACAAGTCCGAGGACGATCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCCGA ACCCTCTCCCTCCGACTCCGACTACGACTCCCTCTACTACTCCGGCGTCGCCAAGCTCATATCCGGTGACGCCCGTGAGG GAGCTGGGGAGATCGAGGCAGCGGCTGAATCTGGCCACCCGGCGGCGCAATCTGTCTTAGGGTTTTTGTGGGGAATGGGG CTTTTGAGAGAAAGAAGCAAATCCAAGGGTTTTCTGTACCATCACTTTGCTGCTGAGGGTGGCAATATGCAGTCCAAGAT GGCTCTCGCTTACACCTACACACGCCAAGATATGTTTGAAAAAGCCGTTAAGCTTTATGGCGAATTAGCACAAGTAGCAG TCAATAGTTTTCTCATTTCAAAGGACTCACCGGTCATTGAACCGGTCAGGCTTCACAACGGAGCTGAGGAGAACAAGGAA GCTCTCAGAAAATCCAAAGGGGAAGAGGATGATGACTTTCAGATTCTCGAGTACCAGGCTCAGAAAGGGAATGCCGCTGC CATGTACAAGGTTGGCCTCTTTTACTACTTCGGCCTCCGAGGCTTGAGGCGTGACCACTCCAAGGCACTCTCCTGGTTCT TGAAGGCTGTTGACAAGGGTGAGCCTCGCTCCATGGAGCTTCTCGGTGAGATCTATGCTAGAGGAGCTGGTGTTGACAGA AACTACACTAAGGCCTTCGAATGGCTTACCCTTGCTTCCAAACACCACCTCTATTCTGCTTATAATGGCATGGGCTATTT GTACGTCAAAGGCTATGGTGTTGACAAGAAGAATTACACTAAAGTTAGTAACATTTCTATTTGCTCTCTTGCTCTTTCTT TCCATCTTTAAGATAGATATGCCGACACATGTATGTATGTATGTATGTATGTATGTTATGTCTATGCCCGCTCCCTGCAT TTATGATAACTTGTGCAAATTACAGGCAAAAGAGTATTTTGAAATGGCTGCTGATAATGATGAGGTTGGCGGCCACTATA ACCTCGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGAGATGTCAAGCTGGCTTGCAAGTTCTTTATAGTGGCTGCA AACCACGGTCAACCAAAGGCATTCTACCAGCTGGCAAAGATTTTCCATCTTGGTGTTGGCTTCAAGAAGAATATTCCCTT GGTGCGTTGATTCTTAACTTGTCTTCTTTGTTTTCTGCAAGTGCCAATGTCATCTGCTGAGTGCTGATTAATGTATCTAA GAGCCTGATGTCAATATGATTCCCTCTTGTTTGTTTGAATATGATATTTTTCATAAGATGCAAGCGATATAAATCATGGC GAATCACCTAAACTCACTGTTGTCACATGATATACGTTTGTCATAACTATATTTGTGTGCTAATGAGCCAACTATTTGTT AGGGTATCCTGGAATCAGAGAATCTGTGGGGTCAGTGTATCAGTCTGGTTGAGTATAAAAGGATGAGACTCCCATGATTA TTCTTCAATATGACTGAATCTTGCTATTCTGTGTTTGATAGAGCTTGCAACAGAACAGGGATCAAACCTTGATTTGAAGT TGAGAATCCTGATTATAATATTGTTCAGTTGTATTCTATTTATTTGTATTTTGTTAACAGAGAAGCCTTTCATCTCGCTT ATTTTCCTCCAATACATTCCCTATAAGTGGCTTACTGTTTAATAAAGCCTCGTACATATATTTATTTCAGGTGGTACCAC GAGATATTAATGCATAATTCAATAGAACAATGATAACTCAAGAAAGTAGAGTACTGTGAATAGAACTATATTCGTCATTC CTTGATGACTCTTTTATCATAAGAAGTCCCTACCAACAAATTTACCTGCTAACAGTTTTCATTTTATCATCTTAGGCTAC TGCCCTATACAAACTAGTTGCAGAGCGAGGTCCATGGAGTTCTCTGTCTAGATGGGCACTAGAGTCATACTTAAAAGGTG ATATTGGGAAGGCTTTTATGTTGTATTCAAGGATGGCTGAGCTGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATT CTTGACAAATATGGAGAACGTAGCATGTGCATGGGTGAAATTGGATTTTGCACTGATGCAGAAAGGCATCAGAGGGCACA TTCTCTTTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTACGGTCGGG TATGTGGTTTTGGGATGACTTTAGGCATGTGCATGCTTTAAATATTCAATTTAAGCCATGATGCTCTCTTTCCCTACAAC ATCACTTCATTTTGTTGTGTCTCTTCCTTCTGTCAGGGTACTAACAGGGACTATGAGCGAGCTGCTGAGGCTTACATGCA TGCCAAATTGCAATCTAATGCACAAGCCATGTTCAATCTTGGTTACATGCATGAGCATGGCCATGGACTTCCATTTGACC TTCATATGGCCAAGCGTTACTATGATGAAGCTCTAGAGCATGATGCTGCAGCCAAGTTGCCAGTCACATTGGCTCTTACA AGCTTGTGGGTCCGCAAGAACTATGCTGACAGTTTCTTGGTGAGTTTCTTTGGTTCACGCAATACTGCATAATTACAACC AACAAGGTGAAGTTGACAAAGTTTGAATCTATTGACAACTTTCTTTGCAACCAATGAGGACATAGATTAGGATAAGATAT TATCTCCCCATTACTCTAGCATCTTAATAAATGGCCAATCGTGCAGTTTGCAATACTTTAACAAAGCTTAGACTTTTGTC TGTATTTATATATGTCACTACATTTCCCCCCATTCTATGAACAACGTGCTTACTTGGGTAATAATTATATTATGTTGTGG TGGTTCAAAAATGTTCAGTAATTAACCTATACAACACAACACAACACAACAGTCACTTATATTCAAAGTTTTTGGAGTAT TAGGGCTTATTGGAAAGTTCCACTGGCCATGGAGAAAGAAACTTGACTTTGATCATTCATTATCCTCCTGTAGCCATACT TTTTTTTACATTTATTCAATACTGTTCTTGATTCTGATTCTGGTTCGGCGTGTATTTCTTGTTATTAGGTCGGTATGATT GATTCATTGCCAGACGTGTATCCTAAATTAGAAGCTTGGGTGGAGGATGTACTCTTAGAGGAGGGAAATGCCACTATTCT CACCCTCTTTGTATGCCTCCTAACTGTGCTATATCTCCGTGAGAGGCAACGAAGGCAAGTTGCTGTTGTAGCTGGAGAGG TAGCTCAGCAAAATCGTCCTAACGAACTTGGTGTACCTGCACCCATCTAA
CDS sequence (LotjaGi4g1v0464700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCACCGTCAAATTCCTTTTCTCTCTACTCCTCACCTTCTCTCTCCTCTCCGTCTCCGTCACCGTCACCGCCCGTCC CTTCGTCCTCGTCCTTTCCCAGGAAGACTTCAAGGACGAAGCCCCCACCGATTCCGACTCCGCCGCCGAGTGGGACGACT TCGGCGACTCCGACCCCCACAAGTCCGAGGACGATCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCCGAACCCTCT CCCTCCGACTCCGACTACGACTCCCTCTACTACTCCGGCGTCGCCAAGCTCATATCCGGTGACGCCCGTGAGGGAGCTGG GGAGATCGAGGCAGCGGCTGAATCTGGCCACCCGGCGGCGCAATCTGTCTTAGGGTTTTTGTGGGGAATGGGGCTTTTGA GAGAAAGAAGCAAATCCAAGGGTTTTCTGTACCATCACTTTGCTGCTGAGGGTGGCAATATGCAGTCCAAGATGGCTCTC GCTTACACCTACACACGCCAAGATATGTTTGAAAAAGCCGTTAAGCTTTATGGCGAATTAGCACAAGTAGCAGTCAATAG TTTTCTCATTTCAAAGGACTCACCGGTCATTGAACCGGTCAGGCTTCACAACGGAGCTGAGGAGAACAAGGAAGCTCTCA GAAAATCCAAAGGGGAAGAGGATGATGACTTTCAGATTCTCGAGTACCAGGCTCAGAAAGGGAATGCCGCTGCCATGTAC AAGGTTGGCCTCTTTTACTACTTCGGCCTCCGAGGCTTGAGGCGTGACCACTCCAAGGCACTCTCCTGGTTCTTGAAGGC TGTTGACAAGGGTGAGCCTCGCTCCATGGAGCTTCTCGGTGAGATCTATGCTAGAGGAGCTGGTGTTGACAGAAACTACA CTAAGGCCTTCGAATGGCTTACCCTTGCTTCCAAACACCACCTCTATTCTGCTTATAATGGCATGGGCTATTTGTACGTC AAAGGCTATGGTGTTGACAAGAAGAATTACACTAAAGCAAAAGAGTATTTTGAAATGGCTGCTGATAATGATGAGGTTGG CGGCCACTATAACCTCGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGAGATGTCAAGCTGGCTTGCAAGTTCTTTA TAGTGGCTGCAAACCACGGTCAACCAAAGGCATTCTACCAGCTGGCAAAGATTTTCCATCTTGGTGTTGGCTTCAAGAAG AATATTCCCTTGGCTACTGCCCTATACAAACTAGTTGCAGAGCGAGGTCCATGGAGTTCTCTGTCTAGATGGGCACTAGA GTCATACTTAAAAGGTGATATTGGGAAGGCTTTTATGTTGTATTCAAGGATGGCTGAGCTGGGCTATGAGGTGGCACAAA GTAATGCTGCTTGGATTCTTGACAAATATGGAGAACGTAGCATGTGCATGGGTGAAATTGGATTTTGCACTGATGCAGAA AGGCATCAGAGGGCACATTCTCTTTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGC ATATTACTACGGTCGGGGTACTAACAGGGACTATGAGCGAGCTGCTGAGGCTTACATGCATGCCAAATTGCAATCTAATG CACAAGCCATGTTCAATCTTGGTTACATGCATGAGCATGGCCATGGACTTCCATTTGACCTTCATATGGCCAAGCGTTAC TATGATGAAGCTCTAGAGCATGATGCTGCAGCCAAGTTGCCAGTCACATTGGCTCTTACAAGCTTGTGGGTCCGCAAGAA CTATGCTGACAGTTTCTTGCCATACTTTTTTTTACATTTATTCAATACTGTTCTTGATTCTGATTCTGGTTCGGCGTGTA TTTCTTGTTATTAG
Protein sequence (LotjaGi4g1v0464700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTVKFLFSLLLTFSLLSVSVTVTARPFVLVLSQEDFKDEAPTDSDSAAEWDDFGDSDPHKSEDDLDPGSWRPIFEPEPS PSDSDYDSLYYSGVAKLISGDAREGAGEIEAAAESGHPAAQSVLGFLWGMGLLRERSKSKGFLYHHFAAEGGNMQSKMAL AYTYTRQDMFEKAVKLYGELAQVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDDDFQILEYQAQKGNAAAMY KVGLFYYFGLRGLRRDHSKALSWFLKAVDKGEPRSMELLGEIYARGAGVDRNYTKAFEWLTLASKHHLYSAYNGMGYLYV KGYGVDKKNYTKAKEYFEMAADNDEVGGHYNLGVMYLKGIGVKRDVKLACKFFIVAANHGQPKAFYQLAKIFHLGVGFKK NIPLATALYKLVAERGPWSSLSRWALESYLKGDIGKAFMLYSRMAELGYEVAQSNAAWILDKYGERSMCMGEIGFCTDAE RHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTNRDYERAAEAYMHAKLQSNAQAMFNLGYMHEHGHGLPFDLHMAKRY YDEALEHDAAAKLPVTLALTSLWVRKNYADSFLPYFFLHLFNTVLDSDSGSACISCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 6 | 594 | 589 | 0.0 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 617 | 592 | - | – | |
| MobiDBLite | 40 | 87 | 48 | - | – | |
| MobiDBLite | 53 | 71 | 19 | - | – | |
| Gene3D | 83 | 187 | 105 | 3.3E-8 | ||
| SUPERFAMILY | 88 | 182 | 95 | 6.54E-11 | – | |
| Pfam | 118 | 153 | 36 | 86.0 | ||
| SMART | 118 | 153 | 36 | 3.5 | ||
| Gene3D | 200 | 583 | 384 | 6.2E-80 | ||
| SUPERFAMILY | 217 | 328 | 112 | 3.01E-21 | – | |
| SMART | 236 | 272 | 37 | 5.0E-7 | ||
| Pfam | 236 | 271 | 36 | 2.4E-8 | ||
| SMART | 273 | 308 | 36 | 3.6E-5 | ||
| Pfam | 274 | 306 | 33 | 1.1E-5 | ||
| SMART | 309 | 345 | 37 | 0.039 | ||
| Pfam | 310 | 344 | 35 | 1.9E-6 | ||
| SUPERFAMILY | 327 | 458 | 132 | 3.53E-26 | – | |
| SMART | 346 | 381 | 36 | 2.6E-7 | ||
| Pfam | 349 | 380 | 32 | 5.2E-5 | ||
| SMART | 382 | 417 | 36 | 0.0099 | ||
| SUPERFAMILY | 429 | 568 | 140 | 6.28E-24 | – | |
| Pfam | 431 | 449 | 19 | 9.8 | ||
| SMART | 498 | 533 | 36 | 2.9 | ||
| Pfam | 499 | 522 | 24 | 2.5 | ||
| SMART | 534 | 569 | 36 | 5.9E-6 | ||
| Pfam | 534 | 568 | 35 | 2.2E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0464700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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