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LotjaGi5g1v0004800.1

Overview

Field Value
Gene ID LotjaGi5g1v0004800
Transcript ID LotjaGi5g1v0004800.1
Lotus japonicus genome version Gifu v1.2
Description Transcription elongation factor (TFIIS) family protein, putative; TAIR: AT4G24200.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|B2J717|MURC_NOSP7 UDP-N-acetylmuramate--L-alanine ligase; TrEMBL-Plants: tr|I1MC29|I1MC29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0004800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:1123087..1128751) extracted from Lotus japonicus Gifu genome v1.2.

ATTAATTTATCCATATGATAGAATTGAGGGTGAAGGGAAGAGAAGATTAAGATTATTCTAGTTCTAGGAGAGGGGATTGA AATTGATGTCCAATGTCTCGTCTTGTCAATGGTCCCATCATTTCCGAACAACTTCTGGCGTCGCACGTGTTAATGCCTCA AACCGAAACCAACCTACGAACCCAATTTTGAAGAAGAAGAAAAACAAAACCCCAAATCGACACCCTCAATTGCCTGCCTC AAACCCAATTTCAATTCGAACACACACACCTCACAGACAAACTCAACCTCCAAGCTGCATAACAACAAACCTCAATTGCT AGGGTTTCTTCTGTTTGATTCATTCACCTCACAAGGTAACTGAATTTCCTTATCACTCCCTTTCTTTCAAGTTTCAATTC CTCTCTTTCGCTATCTCGCAACGTTTTCATTATCATAACTTGCGTCGTGTTAACTGAATTAATTTCCTTTGCATTTCAAT ACTACACACCTCTCAATTTTCTATTCTTTTAGGGGTTTTTCCATTTCTTCTACTTTTAGGGTTTTGCAGTAGCTGCACCT GTGCTTTGGATTTTGTATCATGCTCTTACTCTTGCTTGAAATTTCAGGATTGTGTATGCCTTGTGGTTTCACTTTCAGAC TGATTTTTTCTTAATCATGATTTCATGGTCTTAATTTGATTTAATTACTTTTTACCTGCCCATCAAGTGACTGCCAATCT TATTGCCATAGATTGAGGTTCTAGATGACGAACAAAAATGGTGCGCTAAGTCGATGTACTGGCATAAAGGCATGTTTGTC TTTTATGTAAATGCATAGAAAGTTTGCAAGTTCATGTTATATGTGAATTTTGAAACCAATAGGTATTTCCTTGCATAGAA ACATATGCAGACTTACTTTTCCTTTGCCAATTATAGGTTTCGGCACCATCCAAACTGCTAATTTGTATCACATATCTATA TCTATTGGAATATAACAGAGAATCACTACAGTTTTCTATGTGACATCTTCAGAGAACTTGGTTTTCTCTGTATATTTACT TTATGATAGAGGGCAGCCAAATGCTAGTAACTTAATACCATTACCATTACCATTGGAAACTAGACTCGTAGGATCTGCAC ACTATACTTATATAATGGGCCAGAGTAGTTGATATTTTTATGAAATGATTCGTATTGGTGAATCTGCTAGTATTGTAGTT CACAGTTAATTAAGAAAAACTATTTTATTCTGGTCTATTGCTTCAGGACAAAAAAAGCATTGATCATGTAGGCATATGAA CTTGGTTCCAAGGACTGGGATTTGTTTGATATTTTGCACATGCTATTGGGAGGGAATAATTTGTTTGTTCTGAACACTGG AGTGCTCTTTTCGTATCTCATTTTGTGGCCATTATTCTTGACTTCGGATCTTTATGTTTTCTTTTTTGGTATATCTTTTT CCTATATGATATTCTTTGAGACTTTAATTGAGGGTCTTACATCAATGTGTCAATTGTGATTCTGCTGTACTGTTGATTTA TTTATGGTGTTCTAAGATTGTCAGCAATGGCTCTAATGCTATTTGTAGTTGGCCAGTTGCAAAAAATTTACTGAGACTAA AAACTTGGTGCATTTTTTTTGAAGATATCCTTATTCTTGCTGTACTTGATTTTTTTATGCTGTGTTTTTTTTTTCTTAAA TCTGTGGGAAGATCCTCAAATACTTTTGGAATATTTAACTGTTTGTTCAGAATATTGTGCCAACATGCATATTAACTTTT TTATTATATTTTGCAGCACGTGTTGGTGCTGTACTTTTCCCTAAAATCCCAATAAATTTCTTAATGGAAGAAAAAAAAGC TCTGGCACGCCAAAAGGACAGCCTTGACACTTTGAGAAGGGCTATGTGAAGCATTATGACTCTTGAAGATTTCTTTACCT TGACTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGAGTCGAGGAGTTGATCTCTGCAATGCAAAGGGAGCAAGATTCT GTTGTTAAGAATGCTGGTGATGCAACAAGGCAGTGGGCATCTGTTGCTAGCACTATTGCTGCTACAGAGAACAAAGATTG TCTTGATCTTTTTATTCAATTAGATGGACTTCGGTTTATCAATAGATGGTTAAATGATGCTCAAAATGTTGGTTTCAGTG CAAACGATGGCACCATTGAAGAGTCAATTACCGCAATGTTACGAGCAGTTGAAAAGCTGTATATAGACAGAGAGAAGTCA ATTTCATCAGGAATCTGGGCAACTGTAAGTAACCTTCTTGGTCATCAGAGCTCTAAGGTTCAGGATAGAGCAAGAGTATT ATATGACAACTGGAAAGGAGGTGGAAATGGAGATGCTGAATCTCAACATTCAGATATTGGTAGAATGAACGTGAGTGATA AGGTTGTTAGGGAGGAGTGCCACTTGTCTTCTGTGAAAGAAGCTGGCAATGATGATGATCATGCCTCACGAGTTGTTGGA GGTGAGGAGTCTCTATTGAGAAGCTCAGACAGTCAGTTACCAGAAAAGATTGCTAATGTGCAGATACATAATTCTGACAA CGCATTCCAGTCCTCTCTAAGTTTGGATTGTGAAGATACCAAAGAGAAATCAAACCAACTTGCTATTGTTTTGGTTCCTA CTCAAGAAATTACTCCCGTAGGTGAAGCTGGGATGACATCATCTGAGACCCATAACTTACCTGCTCCAAAGCAAGGCAGT TTCAAAGGACAACCAGATGATTTACAGTTAGGTGATTTATCCAAAAAGGAGATGGAAGATCAAAATGCTAATTGTCCTCC AGAAAAATTAAGGGCACCTCATATCTCTTTAGCTCTAATACAGCCTGATCCTGGACCTGTTTCTATTGGTGCTAGTGAAG CATCAATTAAGCCGGAATCTGATTTAGAACATAACATTAAAAGCAATGAGGATGGTGTTTGTCATAAAATAATTGTTTCT GATAGCGTGGGAATAACTGCATCTGATAGAATGAGTGAGGTGGGTGATGCCAAAGCTTTAAATTCTAGCAATCCGCAACC AGACAAAGCTACAGAAAACAATGATGGGTGTTGTTCTAATACAATGCAGGACTTGTCAATCAGTGGCATTAAGTTGGAAA AGCCCGAGGATTTACAGATGTCTTTCCTCGAAACAGAAGATGGCAGAGAAGTAAAGGAAGAAGGCAAGGGCCATGTTTCT AATAATGACAATGGCACCTCAAATGGTTCTGAATCTTTTAAACAAGGAAAAGGTCCTAGAAGCCCCAAGATTATTGACAA GAATTCTGACATAGAACTTGATTGTGGTATTGTTGATGCTCTAGAAGTTGCTCGACAAGTTGCTCAGGAAGTTGAGAGAG ATGTCAAAGCAGTAAAGGAGGACAGCCATGTCTCTACTCAAGGTGACGATACCTCAAATGGTTCTGATTCTTTTAAACAG GGGGAAGGTCCCAAAAGCCCTGGCGTTGTTGACAAGAATTCTGACATGGAACTTGAGTATGGTATTGTTGATGCTTTAGA AGTTGCTCGACAAGTTGCTGAAGAAGTTGAGAGAGAAATCCAGAACTCTTCTTCAGAGAAAATCTCAGAAGGCGGGAACA GGCAAGCTGGCAGTTCAGATTCTGTAGGGAAAAATGATGAACTTGCTCGTGTCCTACCTGAGGAGGTATCATCCAGGCAA AGCAACCCTGCTGAGGCATGTTCTGAAGAGGAAGGGCATATGAGTGTTTTAGGTGATATTGAGGCTGAGCCAGAAGGCCC AGAATGCCTCCCTGACTTGGAGTCCTCGCAGGTGACTGAAGCAGCTCGAGATCCAGGAGGTAATTCAGAAAAAAGCCTCT GTACCTTTGATCTCAATGAAGAAGTTGGTTCTGATGACGTGGGTGTTTCTTCTAATGCAATGTCTACCACGCCAATACCT ATTGTCTCTGCTTCAAGGACTGCACAAACTTCTGGGTTGCCAACAGCCCCTTTAAAGTTTGATGGAACACTTCAATGGAA AGGATCGGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCATGAAAATACGGAAAGTGAAAAGAATGTTTCTGTTGGTG GCAACTCTGATATTTCCAAGCAGAGGCAGGATTGCCTTGATATTGATCTAAATGTGGCTGAGGGTGAAGAAGAATTTGTA AAACAAATTGGTGAATCGCCAGGCCTTCCTTCTGGGCAATCATCAGTGGAACTTAGTCCTAAAAGATCAAGGAGGTTCGA GTTGGATCTAAACAGTGTTGGTGATGATGGTGATACCCAACCTTCGGATCAGAGGATGGAGGGGCAACTCTTATCAGGAA GAAATGGCTATTGGAGCCCATCACCTGCATCGTCATCATCGTCGATGCAGCCTTCAGTTCGAAACATTGATTTGAATGAC AAACCGCTTTTTCAAACCGATTTAGTGGACAAAGCGCGGCCTACAAAGTCGTCTTCAAATGTTGAAACGTATGGACTTTC TAAATCAGATGCTCCTGTGATCTCAATTTTAGGTGCCAAGGTGGAAGTGGGTAGAAAAGAATTTGTTCCTCAAATTTGGT CTATACCAAATGGCAAGGCTATTATTGAGCCTGCAATGGATCTCACAATGTCTGGAGCAGGTGGTGTTTTAGGGCTGACC CCCACAGTACCCTACAATAATCATTCAACTGTTTTTGGATATAATCAACTGACATCAGCATCCCCCTTGTCTCTTTCATC AGCAAAGTATGGATCAGGTGGCACAATTCCATACATGGTTGACTCAAGAGGAGCTCCAATTGTGCCTCAAGTTGGTGCTG GTGTTGGACCTTCATCTTACACTCAGCCTCCATTTATTATGAGCATGACAGGGACACAACTTGGTTTAAATGGTGTTGGA CCTTCACGTCCCAACTTTGATCTTAACTCTGGCTTGTTGATTGATGGTGGGAATAGAGATGCTTTGGCTACAAGGCCATT TTTCTTTCCTGCTCAGGGCAGAGCTATGGAGGAGCAGCATGTAAGGACCCTTCCACAATCCTCAAGTTCTTCAGGGGTTG GTGGGAAAAGAAAAGAACCAGACAGTAGCTGGGAAACCTATCCATTTAGCTACAAACATCAGCAACCTCCGTGGAAGTAG CTCTAACATGTGCTTTTGTCTCTTCTGATCTGTTTATAACACTACCTACCTACCTATTGATGCTTAGATTATTTACCTAA AATAGTCCTGAAGAGTAGGACAATCCATTGGAATCCGAAGAACCAGAACTAATAAAAGGTGGAGGATGATGGATGTAATA TGATTCATTAGATTGATTGGCATGGGGGGAAATTTAGGATTTTTTTTCTGCAGTTTTATAGAAAGCCAGTACCAGCGCAG AAGGTTTGGTACATGTAATATGATTTGATTTTGTTGCAATGCCTCAGAAATGGTATATTATATGATTTTATTAGCTTAAA TATGTGTTTTATTTAGCAAAAAAATTAAGAGGTGGAATGAATTCATTTTCCTCTACGGTTCTAAAGCCTAAGGGCTTGTT GCTTTAAAAATGTGTGAACAAAATATTATGTATCGGTGGCACTAAAGCCACCACCCCTTTTACCCACTCTCACCTTCCCC TTTTTTAATCCCACATTCATGATTGCTAAATGTATAATTTGTATTATGTAATCCTAAATGCGGCG 

CDS sequence (LotjaGi5g1v0004800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGAGTCGAGGAGTTGATCTC TGCAATGCAAAGGGAGCAAGATTCTGTTGTTAAGAATGCTGGTGATGCAACAAGGCAGTGGGCATCTGTTGCTAGCACTA TTGCTGCTACAGAGAACAAAGATTGTCTTGATCTTTTTATTCAATTAGATGGACTTCGGTTTATCAATAGATGGTTAAAT GATGCTCAAAATGTTGGTTTCAGTGCAAACGATGGCACCATTGAAGAGTCAATTACCGCAATGTTACGAGCAGTTGAAAA GCTGTATATAGACAGAGAGAAGTCAATTTCATCAGGAATCTGGGCAACTGTAAGTAACCTTCTTGGTCATCAGAGCTCTA AGGTTCAGGATAGAGCAAGAGTATTATATGACAACTGGAAAGGAGGTGGAAATGGAGATGCTGAATCTCAACATTCAGAT ATTGGTAGAATGAACGTGAGTGATAAGGTTGTTAGGGAGGAGTGCCACTTGTCTTCTGTGAAAGAAGCTGGCAATGATGA TGATCATGCCTCACGAGTTGTTGGAGGTGAGGAGTCTCTATTGAGAAGCTCAGACAGTCAGTTACCAGAAAAGATTGCTA ATGTGCAGATACATAATTCTGACAACGCATTCCAGTCCTCTCTAAGTTTGGATTGTGAAGATACCAAAGAGAAATCAAAC CAACTTGCTATTGTTTTGGTTCCTACTCAAGAAATTACTCCCGTAGGTGAAGCTGGGATGACATCATCTGAGACCCATAA CTTACCTGCTCCAAAGCAAGGCAGTTTCAAAGGACAACCAGATGATTTACAGTTAGGTGATTTATCCAAAAAGGAGATGG AAGATCAAAATGCTAATTGTCCTCCAGAAAAATTAAGGGCACCTCATATCTCTTTAGCTCTAATACAGCCTGATCCTGGA CCTGTTTCTATTGGTGCTAGTGAAGCATCAATTAAGCCGGAATCTGATTTAGAACATAACATTAAAAGCAATGAGGATGG TGTTTGTCATAAAATAATTGTTTCTGATAGCGTGGGAATAACTGCATCTGATAGAATGAGTGAGGTGGGTGATGCCAAAG CTTTAAATTCTAGCAATCCGCAACCAGACAAAGCTACAGAAAACAATGATGGGTGTTGTTCTAATACAATGCAGGACTTG TCAATCAGTGGCATTAAGTTGGAAAAGCCCGAGGATTTACAGATGTCTTTCCTCGAAACAGAAGATGGCAGAGAAGTAAA GGAAGAAGGCAAGGGCCATGTTTCTAATAATGACAATGGCACCTCAAATGGTTCTGAATCTTTTAAACAAGGAAAAGGTC CTAGAAGCCCCAAGATTATTGACAAGAATTCTGACATAGAACTTGATTGTGGTATTGTTGATGCTCTAGAAGTTGCTCGA CAAGTTGCTCAGGAAGTTGAGAGAGATGTCAAAGCAGTAAAGGAGGACAGCCATGTCTCTACTCAAGGTGACGATACCTC AAATGGTTCTGATTCTTTTAAACAGGGGGAAGGTCCCAAAAGCCCTGGCGTTGTTGACAAGAATTCTGACATGGAACTTG AGTATGGTATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTGAAGAAGTTGAGAGAGAAATCCAGAACTCTTCTTCA GAGAAAATCTCAGAAGGCGGGAACAGGCAAGCTGGCAGTTCAGATTCTGTAGGGAAAAATGATGAACTTGCTCGTGTCCT ACCTGAGGAGGTATCATCCAGGCAAAGCAACCCTGCTGAGGCATGTTCTGAAGAGGAAGGGCATATGAGTGTTTTAGGTG ATATTGAGGCTGAGCCAGAAGGCCCAGAATGCCTCCCTGACTTGGAGTCCTCGCAGGTGACTGAAGCAGCTCGAGATCCA GGAGGTAATTCAGAAAAAAGCCTCTGTACCTTTGATCTCAATGAAGAAGTTGGTTCTGATGACGTGGGTGTTTCTTCTAA TGCAATGTCTACCACGCCAATACCTATTGTCTCTGCTTCAAGGACTGCACAAACTTCTGGGTTGCCAACAGCCCCTTTAA AGTTTGATGGAACACTTCAATGGAAAGGATCGGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCATGAAAATACGGAA AGTGAAAAGAATGTTTCTGTTGGTGGCAACTCTGATATTTCCAAGCAGAGGCAGGATTGCCTTGATATTGATCTAAATGT GGCTGAGGGTGAAGAAGAATTTGTAAAACAAATTGGTGAATCGCCAGGCCTTCCTTCTGGGCAATCATCAGTGGAACTTA GTCCTAAAAGATCAAGGAGGTTCGAGTTGGATCTAAACAGTGTTGGTGATGATGGTGATACCCAACCTTCGGATCAGAGG ATGGAGGGGCAACTCTTATCAGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCGTCATCATCGTCGATGCAGCCTTC AGTTCGAAACATTGATTTGAATGACAAACCGCTTTTTCAAACCGATTTAGTGGACAAAGCGCGGCCTACAAAGTCGTCTT CAAATGTTGAAACGTATGGACTTTCTAAATCAGATGCTCCTGTGATCTCAATTTTAGGTGCCAAGGTGGAAGTGGGTAGA AAAGAATTTGTTCCTCAAATTTGGTCTATACCAAATGGCAAGGCTATTATTGAGCCTGCAATGGATCTCACAATGTCTGG AGCAGGTGGTGTTTTAGGGCTGACCCCCACAGTACCCTACAATAATCATTCAACTGTTTTTGGATATAATCAACTGACAT CAGCATCCCCCTTGTCTCTTTCATCAGCAAAGTATGGATCAGGTGGCACAATTCCATACATGGTTGACTCAAGAGGAGCT CCAATTGTGCCTCAAGTTGGTGCTGGTGTTGGACCTTCATCTTACACTCAGCCTCCATTTATTATGAGCATGACAGGGAC ACAACTTGGTTTAAATGGTGTTGGACCTTCACGTCCCAACTTTGATCTTAACTCTGGCTTGTTGATTGATGGTGGGAATA GAGATGCTTTGGCTACAAGGCCATTTTTCTTTCCTGCTCAGGGCAGAGCTATGGAGGAGCAGCATGTAAGGACCCTTCCA CAATCCTCAAGTTCTTCAGGGGTTGGTGGGAAAAGAAAAGAACCAGACAGTAGCTGGGAAACCTATCCATTTAGCTACAA ACATCAGCAACCTCCGTGGAAGTAG 

Protein sequence (LotjaGi5g1v0004800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTLEDFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENKDCLDLFIQLDGLRFINRWLN DAQNVGFSANDGTIEESITAMLRAVEKLYIDREKSISSGIWATVSNLLGHQSSKVQDRARVLYDNWKGGGNGDAESQHSD IGRMNVSDKVVREECHLSSVKEAGNDDDHASRVVGGEESLLRSSDSQLPEKIANVQIHNSDNAFQSSLSLDCEDTKEKSN QLAIVLVPTQEITPVGEAGMTSSETHNLPAPKQGSFKGQPDDLQLGDLSKKEMEDQNANCPPEKLRAPHISLALIQPDPG PVSIGASEASIKPESDLEHNIKSNEDGVCHKIIVSDSVGITASDRMSEVGDAKALNSSNPQPDKATENNDGCCSNTMQDL SISGIKLEKPEDLQMSFLETEDGREVKEEGKGHVSNNDNGTSNGSESFKQGKGPRSPKIIDKNSDIELDCGIVDALEVAR QVAQEVERDVKAVKEDSHVSTQGDDTSNGSDSFKQGEGPKSPGVVDKNSDMELEYGIVDALEVARQVAEEVEREIQNSSS EKISEGGNRQAGSSDSVGKNDELARVLPEEVSSRQSNPAEACSEEEGHMSVLGDIEAEPEGPECLPDLESSQVTEAARDP GGNSEKSLCTFDLNEEVGSDDVGVSSNAMSTTPIPIVSASRTAQTSGLPTAPLKFDGTLQWKGSAATSAFRPASPHENTE SEKNVSVGGNSDISKQRQDCLDIDLNVAEGEEEFVKQIGESPGLPSGQSSVELSPKRSRRFELDLNSVGDDGDTQPSDQR MEGQLLSGRNGYWSPSPASSSSSMQPSVRNIDLNDKPLFQTDLVDKARPTKSSSNVETYGLSKSDAPVISILGAKVEVGR KEFVPQIWSIPNGKAIIEPAMDLTMSGAGGVLGLTPTVPYNNHSTVFGYNQLTSASPLSLSSAKYGSGGTIPYMVDSRGA PIVPQVGAGVGPSSYTQPPFIMSMTGTQLGLNGVGPSRPNFDLNSGLLIDGGNRDALATRPFFFPAQGRAMEEQHVRTLP QSSSSSGVGGKRKEPDSSWETYPFSYKHQQPPWK 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 501 501 0.0
PANTHER 1 501 501 0.0
SUPERFAMILY 61 155 95 1.12E-7
ProSiteProfiles 73 153 81 11.282
Pfam 101 147 47 1.3E-4
MobiDBLite 259 279 21 -
MobiDBLite 369 394 26 -
MobiDBLite 372 394 23 -
MobiDBLite 423 462 40 -
MobiDBLite 435 450 16 -
Coils 476 496 21 -
MobiDBLite 488 528 41 -
PANTHER 496 1074 579 0.0
PANTHER 496 1074 579 0.0
Coils 541 561 21 -
MobiDBLite 552 671 120 -
MobiDBLite 560 577 18 -
MobiDBLite 706 735 30 -
MobiDBLite 806 829 24 -
MobiDBLite 1033 1074 42 -
MobiDBLite 1036 1051 16 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0004800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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