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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0005100 |
| Transcript ID | LotjaGi5g1v0005100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related thaumatin family protein; TAIR: AT1G75800.1 Pathogenesis-related thaumatin superfamily protein; Swiss-Prot: sp|P83332|TLP1_PRUPE Thaumatin-like protein 1; TrEMBL-Plants: tr|K7M8K8|K7M8K8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0005100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1158234..1160500) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTCACAAAAGCTGGAAAATATTCAACGGGTCCCTGCACCCCTTTCTCCTCTATAAATACCTCCTCTTTTGCTCATT CTCCAAACTAAACAATCTCAACCAGAAGAAGAACGAACTTGGTTTATTCATCAAATTTCCCAGTTCTTTCTTCTTCTTCT TCTCAATCCATGGATCAACCAACACTATCATTGATTTCATTCTTACTAACACTTCATCTTTCACTCTCAGGTATATGATT AATTAACTTTGCAACCATAACAAAATTAATTAATTAGAACTTTGTGAGTTAATTAATTTAGATTATTATTGTGGTGCTTA ATTAAATTAATTTGCTTATGAATTTGCAGGGGTAATTTCAACGACATTTACTTTTGTTAACAAATGTGACTACACAGTGT GGCCAGGCATTCTTTCAAACGCCGGTGTTCCTCCTCTTTCAACCACCGGCTTCGTCCTTCAAACCGGCGAGACAAGCGCC ATCGCCGCACCAACCTCCTGGGGCGGCCGCTTCTGGGGGAGAACCCTCTGCTCCCAGGACGACTCCACCGGAAAATTCTC CTGCGTCACCGGCGACTGCGGCTCCGGCAAGCTCGAGTGCGCCGGCAACGGGGCCCTACCGCCGGCCACGCTGGCGGAGT TCACGCTTGACGGCGCCGGAGGGCTAGACTTCTTCGACGTCAGCCTCGTCGACGGCTACAACGTGCCGATGCTGGTGGTT CCCCAGGGCGGATCCGGCGACAACTGCACCGCGACGGGATGCATCGGCGATCTGAACGGCGCGTGTCCGTCGGAGCTGAG GGTGGACGGGAAGCAGGGCGCCGTGGCGTGTAAGAGCGCGTGTGAGGCGTTTAACACGCCGGAATATTGCTGCAGCGGCG CGTATGGGACACCGGATACTTGCAAACCTTCTTCTTACTCTGAGGTGTTCAAGAGCGCTTGCCCACGCGCGTATAGCTAC GCGTACGATGACAAGACCAGCACCTTCACTTGTGCATCAGCAGATTATACCATCACCTTTTGTCCTTCTCCTACCACCAG GTTAGTAACAATAGTAGTAATAGTTACGTTATTTCCCTCCACTTTTTTTTCACGGTTAAAAAACTATAAAATTTACTGCT AGTAATTGTTTTTCACCCTTTTTCTATTACTAATAGAAAGAGGTAGTATATGATTCCGTTGATATTTTTCAAGAGCTAAT CAAACTGCTTAACTGCATAAATAAATTTAAGAAGTATTAAAGTGCACGCAATCCAAATTCAATATAGTTGGAGAGGTTGA TGAATGATGGTAGGCAGAATAATTATGAATGTCCGGAAATAGGGACCATATGTTGAATCTGAATAACATGGGCAAATGCA ATTAATTGATGCACATGGGATGGATTGGTGCACACATCTCAAGGGTTATCGTTACATAGCACTAACATATCACATGTGAC ACATACAGGTTTTCAATTTTGTCTTTTTCTAATTCTATTTAATTAGGTTTGTTTAATGTCTGATTATATATTGTGTTTGT TTTTGTGTGTGTTTTCAGTCAGAAAGCGTCACAGGGGCAAGACACGAAACAAGTGCCTGGCTCGCCCATGGATAACGACG ACAACAGTAACAGTAACACGATGGTGTATGAAGGTGCTTCTTATGATCAAAATCAAGTATCACGTGCCACCGCCACGTCT ACCCACGCTGTTGCCGCCACTATCACCATAGCTATTTGGCGGTTGTGCCAGCTATCTCCACTTACCTAACTAACTATTCT TTCATTGGGCCCATGGGCCTTCCGATCTATCTAACCACACCTCCACATTCATGGGCCCAAAAGCTTTATTGCTCACCAAC AACAACAAGTATGGTCATGCCATGCCGACTAGGATGTGACTCGTTTGAAGAGAAAGCTCACTGGTCCTTAGATTAGTTGA ATCCAAAAAATATTAAACCAATATAGGTAGGTAGCATTTAGCAATATGTTACTCCCATTATTAAATTAATTCATTTTTAT CTGTTAGACCAATAGGGTATACTGCTATATATTTATTGAATTCTTTGTATTCTGGGCGATGGGATTCATTTACAAGAATG TGTTGCAATTATAAAATTTGTGATACTTTATTCATTTTTGTTCAAATATCACCCTTGTCTCTCTCTAGTGGAGCTCCCAC GATTTTGCCAAACGACCGGAGGGACATGGCACTGCCACGTAATAAATGAAGTGATGTGGAAAAACTTATTCCTTTTTCAA ATTTATATGTAATTCTATATCAAAAAT
CDS sequence (LotjaGi5g1v0005100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAACCAACACTATCATTGATTTCATTCTTACTAACACTTCATCTTTCACTCTCAGGGGTAATTTCAACGACATT TACTTTTGTTAACAAATGTGACTACACAGTGTGGCCAGGCATTCTTTCAAACGCCGGTGTTCCTCCTCTTTCAACCACCG GCTTCGTCCTTCAAACCGGCGAGACAAGCGCCATCGCCGCACCAACCTCCTGGGGCGGCCGCTTCTGGGGGAGAACCCTC TGCTCCCAGGACGACTCCACCGGAAAATTCTCCTGCGTCACCGGCGACTGCGGCTCCGGCAAGCTCGAGTGCGCCGGCAA CGGGGCCCTACCGCCGGCCACGCTGGCGGAGTTCACGCTTGACGGCGCCGGAGGGCTAGACTTCTTCGACGTCAGCCTCG TCGACGGCTACAACGTGCCGATGCTGGTGGTTCCCCAGGGCGGATCCGGCGACAACTGCACCGCGACGGGATGCATCGGC GATCTGAACGGCGCGTGTCCGTCGGAGCTGAGGGTGGACGGGAAGCAGGGCGCCGTGGCGTGTAAGAGCGCGTGTGAGGC GTTTAACACGCCGGAATATTGCTGCAGCGGCGCGTATGGGACACCGGATACTTGCAAACCTTCTTCTTACTCTGAGGTGT TCAAGAGCGCTTGCCCACGCGCGTATAGCTACGCGTACGATGACAAGACCAGCACCTTCACTTGTGCATCAGCAGATTAT ACCATCACCTTTTGTCCTTCTCCTACCACCAGTCAGAAAGCGTCACAGGGGCAAGACACGAAACAAGTGCCTGGCTCGCC CATGGATAACGACGACAACAGTAACAGTAACACGATGGTGTATGAAGGTGCTTCTTATGATCAAAATCAAGTATCACGTG CCACCGCCACGTCTACCCACGCTGTTGCCGCCACTATCACCATAGCTATTTGGCGGTTGTGCCAGCTATCTCCACTTACC TAA
Protein sequence (LotjaGi5g1v0005100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQPTLSLISFLLTLHLSLSGVISTTFTFVNKCDYTVWPGILSNAGVPPLSTTGFVLQTGETSAIAAPTSWGGRFWGRTL CSQDDSTGKFSCVTGDCGSGKLECAGNGALPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVVPQGGSGDNCTATGCIG DLNGACPSELRVDGKQGAVACKSACEAFNTPEYCCSGAYGTPDTCKPSSYSEVFKSACPRAYSYAYDDKTSTFTCASADY TITFCPSPTTSQKASQGQDTKQVPGSPMDNDDNSNSNTMVYEGASYDQNQVSRATATSTHAVAATITIAIWRLCQLSPLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 11 | 292 | 282 | 5.1E-141 | – | |
| PANTHER | 11 | 292 | 282 | 5.1E-141 | ||
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 320 | 300 | - | – | |
| ProSiteProfiles | 24 | 246 | 223 | 44.677 | ||
| Gene3D | 25 | 246 | 222 | 8.3E-96 | ||
| SUPERFAMILY | 25 | 247 | 223 | 1.31E-83 | ||
| CDD | 26 | 245 | 220 | 1.24753E-125 | – | |
| PRINTS | 26 | 38 | 13 | 6.2E-15 | ||
| SMART | 27 | 246 | 220 | 9.4E-119 | ||
| Pfam | 31 | 246 | 216 | 2.2E-84 | ||
| PRINTS | 74 | 85 | 12 | 6.2E-15 | ||
| ProSitePatterns | 88 | 104 | 17 | - | ||
| PRINTS | 127 | 143 | 17 | 6.2E-15 | ||
| PRINTS | 236 | 245 | 10 | 6.2E-15 | ||
| MobiDBLite | 248 | 280 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0005100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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