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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0006900 |
Transcript ID | LotjaGi5g1v0006900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chaperone protein dnaJ; TAIR: AT1G75690.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein; Swiss-Prot: sp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1, chloroplastic; TrEMBL-Plants: tr|I3S1G6|I3S1G6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0006900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1539779..1542594) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGCTCCTTCCTTCTATAAGCCTTGTTCAGCCTAAGACATGGAGTGAGGCATGTTCATCACTCATCATCACAATGAAG TTGCCACGTGGAAGATGGAACCTTAACCAAGTGGTCGTTATTGCAGCTTGGATGATGTCCACTGCTGCTAGTTTTTGGAT TTTCACTTCACTTCTCATTCTGAAAGAAGAATCATTTTCAGTTCTTCAGATAGGAACAACTTAGTAGAACTGAAGGGAAG TGAGAAATGACACTTGCTCCTTCTCTTTCTCTCCCTCACTTCCATTCCTCATTTCTCTGTTGCCCTCTCAAACAACCCTT CTCTCCCTCTTCTAGAAATAGAATTCAACCAAAACCCACATCTTATCCACGCATTAGAGCTCTAGAGTTTGATCAAAACA CGGTTCTTTCTCCTATTTCTTCTCTATTGATTCATCTATATTTATATATATCAAGAAAAAATATGGTATCTTTATTATCT TTAGTAGTTAGTTATTACATTGTGACTGTTTTTCAGGTAATTGCTATAACTGTTGGTGTTGCAAGTGTGGCTATTGGGAT TGGCATTCCAGTGTTCTATGAATCCCAAATTGATAATGCTGTGTGTGAAGTGTTTTTTACTATCACTTTCATTGAATTAT TATGTTATCTAAATTGATATTTTCTAAATAATGTGCACCTTTCTTTTTGTTGCAGGCTAAGCGAGATAACACTCAGCCCT GCTTCCCATGCAGTGGATCTGGTGCTCGTAAGTATTATACTTTTTACCTTCCTTTTCTACCATGTTTGGATCAGCTTCTC TTTCATTTCTGAAAACTATAAGCTGTATGAGTTTCTTACCAGGAATTGATTCTAGGTTCAGAATCAATTATAGAAGGGTT TCCAAACCTTCACTTCATCACACTCCATAATTGATACTTGGACTCCATTAGGCACCATTTTCTGGGGTAGCATTACTAAG GCAGGGTCACAAAGCAGTTTGGAGTAGTTGTAGTTGTAAAGGAGGTTCAGGTATTCAATGGCAAAGGGTCTCGAATTGAT TACCTCTCACTAACACTATTTTTCACACTATCAATCAGTATTTGTTCCAACTTCCAACTAGCCAAAATCTATCTGAATAT CTGATACATTGCCCTCAATTCCAAAAGTAATAGTTTGTATGAATTTCCTTTTTTGATGAATTTTTTATGATACTTATGAG GATGTGAGATTTGACCTGTTTACATAGAACTTCACATTAGGTTGTAAATTTACTTAGTTCAGCTCCGCATAGTGAAAGCA TAGTTGCTTATGAATTTGTAGTATCGGGTCATTACTATCTCCTTACGATGTCTCTTTTATATCCTTATGTGGTGAATAGA CTAAGGGTGTGTTTGTGCAAACAACTTAATGAACCACTTATCATAAGCTAATTTGAGAAGCTTACTGAAAGAAGCTCAAA ATATGTTAGATAGGTGTAAGTGCTTCTTCATAAGCAATATGGCAGCTTTTGAAAGTAAGTTTAAAACAACTTATATGTAG GTCATAAGATATTTATATAAGCTCTCTCGAACACTTGCATAAGCGCTTATACTATAAGATAAGCTCAAATAAACTCTTCC AAACATTACCTAAATCTCATCGACACTTTGTCTTACACAAGTTGCTTAAGTTTTCATGAGTGAGTCTGTTTGAGGAAACT TACAATTAATCATGGTACAATTTAAGAATTGAAAAGGGAAACATTTTAACTGTACTGATAAGAGAAGAATTCACTACATT AGTTAGGACAATGTAACATGCTAGTCCATATATTCACCACTTTAAACAACTTGCCACTGTAAAGGCCAATTCAATTGTTT GATAATCTTATGTTTGAAAGTGTTACCCTTTAACCAGAGAAATGCAGATTTTGCTTGGGAACTGGCAATGTGACAGTCGA ACTTGGTGGGGATGAAAAGGAAGTCTCTCGATGCATAAATTGTGACGGCGCTGGCTCACTGACATGTACCACTTGTCAAG GATCGGGAATTCAACCTCGTTACCTTGATCGTAGGTACGGTGTTCTGCAATCTGATAGATATCCCCCCCCCCCCCCCCCC CCAATGTCATTTTCTAATGAAAAAGTTTAGTGATTATCCCAAACCATGATTTTGTCAGCCAGTATTTAATTAATTCACAA TAACAATAAGCCTACAGGGATTGGTTCAGCATGAAAGAGGCTAAAAGGATTAGTGATATTGAGGAACCTTAAATAAATGA CTCATACAAGTTTCTTCAACATAACTTAAGCATTCCCTTGGTTTGGTTAACATATTTTGTAGTGAACTAAAATCATTAAT AACTACTGGCAATAAAATGATGGTACTTAGAAAACGGTCTTTATGTCTTTGCTGTTGTATTGTTAATCATAAATCTGTGT TTCATATTCATCAGAGAATTCAAAGATGATGATTGAGGCGAGTTGAAAATAAGCGGCGGTGATTTGGCATTCAATGGCGA GGATAATTTACTCATTTAATTTCAATAGTCTCTGTACACATGTAATCCAACAGTCAAAATTGTGTTGATGCTTTCATATG ATTTACATTTTAACCTGTGATGTTAGGCTACTCTCTTCCATGAGCTATCTGTGTAAAGTTTTGGCGTTTCTGGTCATTTT TTTATTCAATTATTCAATGTCCTTTTGTAAATGTTGGATTTTGTTGTGTTTATGGCCTTAGGACTTGACAACTATGCTCA AATTATTATAACTGGTGTTATTTCTGTTTCTATTGAATGAACTGTTTCTGGGAATTGACTCTTAAATAATGGATATAGTA GTAGGCTATGGTGAAG
CDS sequence (LotjaGi5g1v0006900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACTTGCTCCTTCTCTTTCTCTCCCTCACTTCCATTCCTCATTTCTCTGTTGCCCTCTCAAACAACCCTTCTCTCC CTCTTCTAGAAATAGAATTCAACCAAAACCCACATCTTATCCACGCATTAGAGCTCTAGAGTTTGATCAAAACACGGTAA TTGCTATAACTGTTGGTGTTGCAAGTGTGGCTATTGGGATTGGCATTCCAGTGTTCTATGAATCCCAAATTGATAATGCT GCTAAGCGAGATAACACTCAGCCCTGCTTCCCATGCAGTGGATCTGGTGCTCAGAAATGCAGATTTTGCTTGGGAACTGG CAATGTGACAGTCGAACTTGGTGGGGATGAAAAGGAAGTCTCTCGATGCATAAATTGTGACGGCGCTGGCTCACTGACAT GTACCACTTGTCAAGGATCGGGAATTCAACCTCGTTACCTTGATCGTAGAGAATTCAAAGATGATGATTGA
Protein sequence (LotjaGi5g1v0006900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLAPSLSLPHFHSSFLCCPLKQPFSPSSRNRIQPKPTSYPRIRALEFDQNTVIAITVGVASVAIGIGIPVFYESQIDNA AKRDNTQPCFPCSGSGAQKCRFCLGTGNVTVELGGDEKEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 52 | 52 | - | – | |
PANTHER | 4 | 156 | 153 | 1.1E-72 | – | |
PANTHER | 4 | 156 | 153 | 1.1E-72 | – | |
TMHMM | 51 | 73 | 23 | - | – | |
Phobius | 53 | 73 | 21 | - | – | |
Phobius | 74 | 156 | 83 | - | – | |
Gene3D | 77 | 146 | 70 | 4.9E-5 | – | |
SUPERFAMILY | 83 | 143 | 61 | 1.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0006900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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