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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0008200 |
| Transcript ID | LotjaGi5g1v0008200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase family protein; TAIR: AT3G26560.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; TrEMBL-Plants: tr|A0A1J7IMS8|A0A1J7IMS8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0008200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1793951..1795835) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTGATTCAATTCCAAAAGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGACGGGTGAAAGACATCTTGCCCA GGAGCTCAGGGGTGTTGGTTTATCAGCCTATGATATGCCTGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTG GGCAGAGGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTGAAAAAAGAATTGATTCAGGCA GTCCATGATAATCAGCTGCTGGTGGTGATTGGTGAAACTGGTTCAGGTAAAACTACTCAGGTCACACAGTATCTTGCTGA AGCGGGTTACACCACAAGAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCGATGTCAGTTGCAAAGAGAGTTG CAGAAGAGTTTGGTTGTAGATTAGGAGAGGAAGTTGGTTATGCCATTCGTTTTGAGGATTGCACTGGACCTGATACTGTA ATCAAGTACATGACGGATGGTATGCTCCTTAGGGAAATATTGGTTGATGAGAGTCTATCACAGTATTCTGTTATCATGCT TGATGAAGCCCATGAAAGAACAATTCATACCGATGTTCTTTTTGGACTCCTGAAGCAGCTAGTGAAGCGTAGACCTGAAT TGCGATTGATTGTCACATCTGCTACTCTGGATGCTGAGAAGTTTTCAGGATATTTCTATAACTGTAACATCTTCAGAATT CCTGGGAGAACTTTTCCTGTGGAGGTACTTTATACTAAACAGCCAGAAAGTGATTACCTAGATGCATCTTTAATCACTGT TCTACAGATCCACTTGACAGAACCTGAAGGGGACATTCTTCTATTTTTGACTGGTCAAGAGGAGATTGATTTTGCTTGTC AGTCTCTCTATGAGAGAATGAAGGGGTTAGGTAAGAATGTACCAGAGCTGATTATTTTGCCTGTTTATAGTGCCCTTCCT AGTGAAATGCAATCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTAGTAGTGGCTACTAACATTGCTGAGGC TTCCTTGACTATTGATGGAATATTTTATGTCATTGATCCTGGATTTGCGAAGCAAAATGTTTATAACCCCAAGCAAGGTC TTGATTCTTTGGTCATAACTCCAATCTCTCAAGCATCAGCCCAACAAAGAGCTGGACGTGCAGGGCGCACTGGACCTGGA AAGTGTTATCGTCTCTATACTGAGAGTGCATATAGGAATGAGATGTCTCCTACTTCAATTCCAGAGATTCAAAGGATAAA TTTGGGGACGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTTCTGTCCTTTGATTTTATGGATCCGCCATCAC CCCAAGCTCTTATTTCTGCCATGGAGCAGTTGTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGG AGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGCTGCTTGCCAGCGTAGACCTTGGATGCAGTGATGA GATTTTGACCATAATTGCCATGATCCAGACAGGCAATATTTTTTACAGGCCCAGGGAAAAGCAAGCCCAAGCAGATCAAA AGAGGGCAAAGTTTTTCCAGCCCGAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTT TCTGGGCCATGGTGTTTTGAGAATTTCGTTCAATCTCGATCCTTGAGAAGAGCACAGGATGTTAGGAAACAGCTTCTTAC CATCATGGATAAGTAAGATATTTATCTATCAATCATCCCACATGTTTTATTTGCTTTGATTTTTTTCTCTTTGCTATGTT CTCTACATGTCTTTGTTGTTCTACATATTTAGTTGCTCCCAATAG
CDS sequence (LotjaGi5g1v0008200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTAGTAGTGGCTACTAACATTGCTGAGGCTTCCTT GACTATTGATGGAATATTTTATGTCATTGATCCTGGATTTGCGAAGCAAAATGTTTATAACCCCAAGCAAGGTCTTGATT CTTTGGTCATAACTCCAATCTCTCAAGCATCAGCCCAACAAAGAGCTGGACGTGCAGGGCGCACTGGACCTGGAAAGTGT TATCGTCTCTATACTGAGAGTGCATATAGGAATGAGATGTCTCCTACTTCAATTCCAGAGATTCAAAGGATAAATTTGGG GACGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTTCTGTCCTTTGATTTTATGGATCCGCCATCACCCCAAG CTCTTATTTCTGCCATGGAGCAGTTGTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAA ATGGCAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGCCCAGGGAAAAGCAAGCCCAAGCAGATCAAAAGAGGGCAAA GTTTTTCCAGCCCGAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTGGGCCAT GGTGTTTTGAGAATTTCGTTCAATCTCGATCCTTGAGAAGAGCACAGGATGTTAGGAAACAGCTTCTTACCATCATGGAT AAGTAA
Protein sequence (LotjaGi5g1v0008200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAQQRAGRAGRTGPGKC YRLYTESAYRNEMSPTSIPEIQRINLGTTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRK MAEFPLDPPLSKMPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMD K
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 84 | 84 | 1.43298E-57 | – | |
| ProSiteProfiles | 1 | 117 | 117 | 13.835 | ||
| SMART | 1 | 76 | 76 | 0.0059 | ||
| Gene3D | 1 | 96 | 96 | 4.8E-44 | – | |
| PANTHER | 1 | 173 | 173 | 2.9E-158 | – | |
| PANTHER | 1 | 173 | 173 | 2.9E-158 | – | |
| SUPERFAMILY | 2 | 238 | 237 | 3.23E-53 | ||
| Pfam | 3 | 76 | 74 | 6.3E-8 | ||
| Gene3D | 98 | 143 | 46 | 5.3E-21 | ||
| SMART | 137 | 199 | 63 | 9.9E-13 | ||
| Pfam | 138 | 173 | 36 | 4.5E-11 | ||
| PANTHER | 174 | 240 | 67 | 2.9E-158 | – | |
| PANTHER | 174 | 240 | 67 | 2.9E-158 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of LotjaGi5g1v0008200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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