Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0019000 |
| Transcript ID | LotjaGi5g1v0019000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related thaumatin family protein; TAIR: AT1G75030.1 thaumatin-like protein 3; Swiss-Prot: sp|P28493|PR5_ARATH Pathogenesis-related protein 5; TrEMBL-Plants: tr|A0A1J7G7J2|A0A1J7G7J2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0019000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3667740..3669247) extracted from Lotus japonicus Gifu genome v1.2.
CTTCGCTCACTATAAATTCACTACCCTGCAATACTTCCATATCCACTCCTCCACTCTCTCTTTGTTCACCCCAACTTCCC AATCGCCATTCTTTGCTCTCTGCTTTTCCTATCTCAAATTAAGCCATGGCACTTACCCTAAACTCCAAAGCCTTTTTCAT CTTCCACCTGCTCCTCCTATTAGGTAAACAACAATTCCCTTGTGCTAATTTTTAAAGCACTCAGATTTCTTTTTTTATAT CTATTGTTTTTAATTTGTTCATGAAATCATATTTTTGTAGCTTGCTAATGTAGCATGTTACATAATTTAGTAAATTGGTC TCATGTCTCCTAAAATCATGGTTTCATATTGCGATTTGTAACTGCAATTGGGGTTTCAAATTGCGGTTTCCAATTGCAAT TGTAAATTTATACCAAGTGTTATTAGAAATTTTATGATGAAAAGAAAAGGACTTACTTATACCGCATAATTATTCATTGA TTCATCCATGAAATTCATAGAATTGTTAATTCATGCATGAACTTTTTTTGCAGGTAATGTAGCATCTGCTACACTGTTCA CCCTTGAGAATCACTGCACTTACACAGTTTGGCCGGGAACTCTTTCAGGCAACGGCGCAGCGGTTCTTGGTGATGGCGGT TTTTCCCTGGCACCCGGCGCTTCCGTTCAGGTGACGGCGCCGTCAGGCTGGTCCGGGCGCTTCTGGGCCCGGACCGGCTG CAATTTTGACGGCACCGGGAACGGAAACTGCGCCACCGGAGACTGTGCCGGAGGACTGAAGTGCACAGGAGGAGGTGTCC CTCCGGTGACGCTAGCCGAGTTCACTATCGGAACCGCCAGTAACGGTAACAAGGACTTCTATGACGTGAGCTTGGTCGAC GGTTACAACGTGGGAATGGGGGTACGGGCTACCGGAGGAACCGGTGACTGCCAGTACGCCGGTTGTGTTGCGGATTTGAA CGGCTCCTGCCCGGCGGAGCTGCAGGTTAAAGGGGAAAACAGCACCGGCGAGGTGGTTGCGTGCAAGAGCGCGTGCGCGG CGTTTAATACGACGGAGTTTTGCTGCACCGGCGAGCACGCGACGCCGGCGACATGTTCGCCGACGCATTACTCGGAGATT TTCAAGAGTGCGTGTCCAACGGCTTACAGTTACGCTTACGATGATGCGACAAGCACGTGCACGTGTTCTGGTTCTGATTA CAGCATCACGTTTTGCCCCAATGGATCTTCCTAGTCATTATTATTATTAATGTAGTAAATAAAGTTTATTAATAGCATTA AATCTATTTCATCATTACATTGAGTGTTTAAGTTTAGTGAGCAATTTATGGATTTTAATTTTATTCCCTCTTTCTTGTTA GGGGGTAGTAGTACGCTAGTAGCATATTGATATTGGATTATTCATGGTTCAAATATTCTATTTTTGTGTTAGTTCTTGTC AATTTAATACTACCATTAAATTAGCTTATTATCGCTTTGAAATTGCATATTTTTATAAACTGTGCCAT
CDS sequence (LotjaGi5g1v0019000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTTACCCTAAACTCCAAAGCCTTTTTCATCTTCCACCTGCTCCTCCTATTAGGTAATGTAGCATCTGCTACACT GTTCACCCTTGAGAATCACTGCACTTACACAGTTTGGCCGGGAACTCTTTCAGGCAACGGCGCAGCGGTTCTTGGTGATG GCGGTTTTTCCCTGGCACCCGGCGCTTCCGTTCAGGTGACGGCGCCGTCAGGCTGGTCCGGGCGCTTCTGGGCCCGGACC GGCTGCAATTTTGACGGCACCGGGAACGGAAACTGCGCCACCGGAGACTGTGCCGGAGGACTGAAGTGCACAGGAGGAGG TGTCCCTCCGGTGACGCTAGCCGAGTTCACTATCGGAACCGCCAGTAACGGTAACAAGGACTTCTATGACGTGAGCTTGG TCGACGGTTACAACGTGGGAATGGGGGTACGGGCTACCGGAGGAACCGGTGACTGCCAGTACGCCGGTTGTGTTGCGGAT TTGAACGGCTCCTGCCCGGCGGAGCTGCAGGTTAAAGGGGAAAACAGCACCGGCGAGGTGGTTGCGTGCAAGAGCGCGTG CGCGGCGTTTAATACGACGGAGTTTTGCTGCACCGGCGAGCACGCGACGCCGGCGACATGTTCGCCGACGCATTACTCGG AGATTTTCAAGAGTGCGTGTCCAACGGCTTACAGTTACGCTTACGATGATGCGACAAGCACGTGCACGTGTTCTGGTTCT GATTACAGCATCACGTTTTGCCCCAATGGATCTTCCTAG
Protein sequence (LotjaGi5g1v0019000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALTLNSKAFFIFHLLLLLGNVASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGASVQVTAPSGWSGRFWART GCNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTASNGNKDFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVAD LNGSCPAELQVKGENSTGEVVACKSACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGS DYSITFCPNGSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PIRSF | 2 | 252 | 251 | 6.4E-104 | ||
| Phobius | 9 | 19 | 11 | - | – | |
| PANTHER | 10 | 249 | 240 | 2.3E-113 | ||
| PANTHER | 10 | 249 | 240 | 2.3E-113 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| ProSiteProfiles | 25 | 250 | 226 | 46.555 | ||
| Phobius | 25 | 252 | 228 | - | – | |
| Gene3D | 26 | 248 | 223 | 2.5E-92 | ||
| PRINTS | 27 | 39 | 13 | 2.8E-25 | ||
| SUPERFAMILY | 27 | 249 | 223 | 2.49E-83 | ||
| CDD | 28 | 247 | 220 | 2.61345E-117 | – | |
| SMART | 28 | 248 | 221 | 2.2E-128 | ||
| Pfam | 32 | 248 | 217 | 9.2E-84 | ||
| PRINTS | 75 | 86 | 12 | 2.8E-25 | ||
| PRINTS | 88 | 117 | 30 | 2.8E-25 | ||
| ProSitePatterns | 88 | 103 | 16 | - | ||
| PRINTS | 238 | 247 | 10 | 2.8E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0019000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…