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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0021600 |
| Transcript ID | LotjaGi5g1v0021600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT2G26490.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A1J7HAH3|A0A1J7HAH3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0021600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3919084..3922113) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGACAACAAATTAAGGCAATGCATGCAGTGTTGACAATCACAACACCAACATTCCAAACATTCTTCTTCTCCCAACA GAGAAACAGTGCTATATTTTACCAAAGAATCCGCCACGTGTCAACACACCATTGAACCAACCACCATCACCGTTCATTCC CACCACCTATAAATACCATTTTATACCCTCTCTCTCCTCTCCCGCCTTCAGCACACAACAAATCTTCAATTTCTGTTTTA ACTTCTTCCAATTCTTCCCATTTTCCATAACCAAACCAAACAAACTCTTATTCATTTTCCGTGCCTCTGTTCTCCCCCTG AAACCATTTGCATTCTCCGGTGACAATTCGTTATTCAAAAACCGGTCTCCGATCGGTGAATGAGGATCGAACCGGCATCG AGATAAATCATGGCAGTGAGAGAGGACAGAGACATGAACAACAACATCAACCACATCCCACGCCCCCAATTCATGCACTC CGAGCCGCGGCTCTCCACGACGGAGCCGCTAACTGACATTGATGACTTCGCAATGCGAAGCAGCAGTGCAGCATCACCGA TGAGCCCTTACTACTACGACCCGAGCAGGTTGAGCGGTGAAGGCTCACCGATGATGATGTCACCGTGGAATCAGACCGCC AATTCCCCGTTCTCGAAAACACAATGGTCGTCGTCAAACTACGACGACGTTGTGGTTCCGCAGAACGGGTTAATTGGGTC CCTCGTTCGCGAGGAAGGACACATTTACTCCCTCGCTGCAACCGGCGACCTTCTCTACACCGGCTCCGACAGCAAGAACA TCCGCGTGTGGAAGAATCTGCAAGAGTATTGCGGATTCAAATCCAACAGCGGGTTGGTGAAATCGATCATCATCGCCGGC CAGAAAATCTTCACCGGCCACCAGGACGGGAAGATCAGGGTGTGGAAGGTTTCTGTGAAGAATCCGAGCGTGCACAAACG CGCCGGCACGTTGCCAACGCTGAAGGACATTTTCAAGAGCTCGATTAAGCCGAGCAACTACGTGGAGGTGCGGCGCCACC GCACTGCGCTGTGGATCAAGCATTCCGACGCCGTTTCGTGCCTGAGTTTGTCGCACGATAAGACGTTCTTGTATTCGGCG TCGTGGGACAGGACGATCAAGATTTGGAGGATTTCGGATTCGAAGTGCTTGGAGTCGATTCCGGCTCACGACGACGCTGT GAATGCGGTGGTTAGTGGTGCCGAAGGGGTGGTTTTCTCTGGGTCCGCGGATGGGACGGTGAAGGTGTGGAAGAAGGAGA CGCGTGGAAAGGGAATCAAGCACGCGCCGGTGAAGACGCTGTTGAAGCAGGAATGTGCCGTTACGGCCTTAGCGGTGGAC CCCACAGGTTCGAGTTGTCATTTTAAATTTTTTTTTAAGGAATTTTTTTCTTTAATTTTGAAGTCTGATTTTAATTTTTT TGATACAAGATGGAAATTATGAAAAGAGAGTACTCCAATATTTAAAGTATTTTAGGAAGAGGAAAGAGTAATTTTCCTTC ATTAAAGATATATATAACTTTTTCTGTCCTTAAGACATGGAAATGGTTATTTTGTGATGGAAAATATAATTTTGATTTTT AAACACTAGATAACTCCATATTTTATAAGTTTCACACCTTATATCTTTATTTATTAAAAAAAATCTCTTCTCTTTACTTT TTTTATTTCTTTCTGTGAGTCTATCAACTATTTTTATTAGAAATAAATAAATATTATATTATTTAGTTTTCACACTATGT TTTTTATTTTATTTTTGTCAAGTCGTAAGATTAATCTTTATCGTTTTCTGCATCATTTTGAGACTAAAAGCGTGTTTGGA TGTGTTTAAAATCAAGTATCGGTCCTTCCCTGTAGAAGTTATGAATAACTTTTTCTCCAAAACTTTGATAAAAATCAATT ATGGCTTAATTTGGAAACTTAACTAGCTACCAATAATACTGTAAGTAGCAGAAATATGTAGCAAAGTTACACATTTCTTA TTTAACATGATTATTAGATTGAATTTAGTACAATAAATTAGTCATTTGATTGGCAAAATACATATACAAGCTTGATTTTA CTGACAAAAGGTTATCTAATGATTTTTATTTTCCAATATAACATGAAAATTTTCTGGTTGCTTTGATCTTATCCACTTTG CAGGCTCTATTGTATACTGTGGGGCCTCAGATGGATTGGTTAATTTTTGGGAACGTGAGAAGGACTACGCGCATGGAGGG GTTTTGAAGGGTCACAAGCTCGCCGTGTTGTGTCTCTCATCCGCGGGGACATTGGTGTTCAGCGGGTCTGCGGACAAGAC CATATGTGTGTGGCGGAGGGATGGGATGATTCACACGTGCGTGTCAGTGCTAACAGGCCACGAGGGTCCTGTGAAGTGCC TTGCAGTGGAGGAGGACCGTGAGTCAGCTGCAAGGGGTGACCAACGGTGGGTGGTGTATAGTGGCAGCTTGGATAAGTCA GTGAAGGTGTGGAGTGTCTCCGAGATGCTACCCCAACAACACTGCATGATGGCCTACGATGCAGACTCAGCTCCTTCTGA GTCTGATGGCAGCTACTCTTCAGGTCGGGCCAGCCGCAACAAGAGGAGCTGATGGCAGCTATTCTTCACGGGATGATTGT GTATGGCATGGTTGAAGTTCTTTTATTTATGTAATATAATTTGTGTAAGCTAAGAATGATTTTGAAGTAGTTAAATATTT GTAATTGTTGGGGGCGTGTGTGCATGAGGTTCAGAACACAGGTTGGAAATTGGACAACAAGGACGATTGATTGCATTCAA GATATGATAATCTTTTTAAAATTCAGGTTTTGATAGTGTAGGTGTGGTGGAATGTTTGCTCGCTTCATTTCTAAATTATA TTATGGGTCAGAGTTCGATCCTCATCTATAAAAATGAAGTACATTTCATGACGAATTATTTACTGTTTAATATATACACC CGCAATGAGAAAATTGATAACGATGGTAATTTTTAGTAAATAATTTGATCTCAACAAAAAAATAATTCAG
CDS sequence (LotjaGi5g1v0021600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGAGAGAGGACAGAGACATGAACAACAACATCAACCACATCCCACGCCCCCAATTCATGCACTCCGAGCCGCG GCTCTCCACGACGGAGCCGCTAACTGACATTGATGACTTCGCAATGCGAAGCAGCAGTGCAGCATCACCGATGAGCCCTT ACTACTACGACCCGAGCAGGTTGAGCGGTGAAGGCTCACCGATGATGATGTCACCGTGGAATCAGACCGCCAATTCCCCG TTCTCGAAAACACAATGGTCGTCGTCAAACTACGACGACGTTGTGGTTCCGCAGAACGGGTTAATTGGGTCCCTCGTTCG CGAGGAAGGACACATTTACTCCCTCGCTGCAACCGGCGACCTTCTCTACACCGGCTCCGACAGCAAGAACATCCGCGTGT GGAAGAATCTGCAAGAGTATTGCGGATTCAAATCCAACAGCGGGTTGGTGAAATCGATCATCATCGCCGGCCAGAAAATC TTCACCGGCCACCAGGACGGGAAGATCAGGGTGTGGAAGGTTTCTGTGAAGAATCCGAGCGTGCACAAACGCGCCGGCAC GTTGCCAACGCTGAAGGACATTTTCAAGAGCTCGATTAAGCCGAGCAACTACGTGGAGGTGCGGCGCCACCGCACTGCGC TGTGGATCAAGCATTCCGACGCCGTTTCGTGCCTGAGTTTGTCGCACGATAAGACGTTCTTGTATTCGGCGTCGTGGGAC AGGACGATCAAGATTTGGAGGATTTCGGATTCGAAGTGCTTGGAGTCGATTCCGGCTCACGACGACGCTGTGAATGCGGT GGTTAGTGGTGCCGAAGGGGTGGTTTTCTCTGGGTCCGCGGATGGGACGGTGAAGGTGTGGAAGAAGGAGACGCGTGGAA AGGGAATCAAGCACGCGCCGGTGAAGACGCTGTTGAAGCAGGAATGTGCCGTTACGGCCTTAGCGGTGGACCCCACAGGC TCTATTGTATACTGTGGGGCCTCAGATGGATTGGTTAATTTTTGGGAACGTGAGAAGGACTACGCGCATGGAGGGGTTTT GAAGGGTCACAAGCTCGCCGTGTTGTGTCTCTCATCCGCGGGGACATTGGTGTTCAGCGGGTCTGCGGACAAGACCATAT GTGTGTGGCGGAGGGATGGGATGATTCACACGTGCGTGTCAGTGCTAACAGGCCACGAGGGTCCTGTGAAGTGCCTTGCA GTGGAGGAGGACCGTGAGTCAGCTGCAAGGGGTGACCAACGGTGGGTGGTGTATAGTGGCAGCTTGGATAAGTCAGTGAA GGTGTGGAGTGTCTCCGAGATGCTACCCCAACAACACTGCATGATGGCCTACGATGCAGACTCAGCTCCTTCTGAGTCTG ATGGCAGCTACTCTTCAGGTCGGGCCAGCCGCAACAAGAGGAGCTGA
Protein sequence (LotjaGi5g1v0021600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVREDRDMNNNINHIPRPQFMHSEPRLSTTEPLTDIDDFAMRSSSAASPMSPYYYDPSRLSGEGSPMMMSPWNQTANSP FSKTQWSSSNYDDVVVPQNGLIGSLVREEGHIYSLAATGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKSIIIAGQKI FTGHQDGKIRVWKVSVKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHRTALWIKHSDAVSCLSLSHDKTFLYSASWD RTIKIWRISDSKCLESIPAHDDAVNAVVSGAEGVVFSGSADGTVKVWKKETRGKGIKHAPVKTLLKQECAVTALAVDPTG SIVYCGASDGLVNFWEREKDYAHGGVLKGHKLAVLCLSSAGTLVFSGSADKTICVWRRDGMIHTCVSVLTGHEGPVKCLA VEEDRESAARGDQRWVVYSGSLDKSVKVWSVSEMLPQQHCMMAYDADSAPSESDGSYSSGRASRNKRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 13 | 27 | 15 | - | – | |
| PANTHER | 50 | 449 | 400 | 2.2E-209 | – | |
| PANTHER | 50 | 449 | 400 | 2.2E-209 | – | |
| Gene3D | 86 | 192 | 107 | 2.1E-10 | ||
| SMART | 98 | 135 | 38 | 0.58 | ||
| SUPERFAMILY | 107 | 438 | 332 | 5.49E-56 | ||
| CDD | 109 | 430 | 322 | 7.26166E-51 | – | |
| Pfam | 109 | 135 | 27 | 0.081 | ||
| SMART | 136 | 173 | 38 | 8.2 | ||
| Gene3D | 205 | 297 | 93 | 1.5E-22 | ||
| SMART | 208 | 247 | 40 | 6.0E-6 | ||
| ProSiteProfiles | 215 | 439 | 225 | 30.716 | ||
| ProSiteProfiles | 215 | 256 | 42 | 13.082 | ||
| Pfam | 218 | 246 | 29 | 1.4E-5 | ||
| PRINTS | 234 | 248 | 15 | 3.5E-6 | ||
| SMART | 250 | 288 | 39 | 5.6E-6 | ||
| Pfam | 252 | 288 | 37 | 0.0014 | ||
| ProSiteProfiles | 257 | 288 | 32 | 9.94 | ||
| PRINTS | 275 | 289 | 15 | 3.5E-6 | ||
| SMART | 297 | 336 | 40 | 0.0035 | ||
| Gene3D | 298 | 467 | 170 | 2.4E-26 | ||
| ProSiteProfiles | 304 | 336 | 33 | 9.105 | ||
| Pfam | 307 | 335 | 29 | 0.046 | ||
| SMART | 340 | 377 | 38 | 0.013 | ||
| Pfam | 345 | 376 | 32 | 7.5E-4 | ||
| ProSiteProfiles | 347 | 376 | 30 | 8.67 | ||
| SMART | 382 | 430 | 49 | 1.0E-5 | ||
| Pfam | 384 | 430 | 47 | 3.7E-5 | ||
| PRINTS | 417 | 431 | 15 | 3.5E-6 | ||
| MobiDBLite | 446 | 468 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0021600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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