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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0022300 |
| Transcript ID | LotjaGi5g1v0022300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3991270..3994330) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGTCTTTTGGAATCAAAACGTAGGTTTTGTATCTATGACATTATATCAATTGTGGGATTTTGGGGTGTATTGTGATT CATACTTCTTGTTAGCACTGAAGGAATGAAGGGTCTTTGAAGAGTACATTACCATTTGTGCCTAGAAGCCGTTTAACTTA GTTTCAGTATTTGCAATTGTCTGTTGGTCCATTTGACAAGGAATTTGGTTCTCCTGTATTAAGGTCTTAGCTTTTCATTT AACTTGATTTGTTTTCGTATGCAAGAGAAATTGACTTGGATGTTGTGTTTCATTTTATTCAGATCCGCTCTTGGTTAAGG CTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAG CTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAA AGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTTGGAATTGAATTTGACATAG AAGATGTAAGGGGACCTGTTATACAGTCACCTATTCGCTCTGAGGAGGGATTAAAGGCTTTGCACTCAATCGACTTGGAC AGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCGCCAGGAGGTACAATATAGTTACATCAGCTCATCTGCGGTGTG TTTGGATTTCTATTCTGAAAACTTAAATGTACTTTCAATGAAAATCCATGTCTCTGTAATGGATTGGGATGAAAGTTCTT TTATATCAATGTAATGTAAATCCAAACACGCTTAGCCTGTTCCCATTTCTAATTCATTTTTCTGTAGGTTGGTGGTCATG CTGCCGTTTTGGGTTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGGGTACGACACGCACTTACACA ACCATTAAGAGCATGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTGTCACAGGCGATAGCAGATTA CATTGTTTTCCAAGTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGGACAATTACCACCTAGTATGT GGGAAAGCTGGTCAAAGCCTTATATCACCGAGGTAACTAAGGAAAATTCTTTCTTCCCTGATAATTTTGTGTTTTAATGT TTTAAACTTTTCAATGTTAAGCCTAACATTGGAAATTTTCTTCAGTTGAAGAAAGTAAAAAGACATAGCTTGATGAGCTG TGCAAAAATTATTAGGTTTTATGTCAAGTTAATTTTGTATTGTTCCAAGCATCCATCATTATTCTTGGTTAGTTGACCTG GTAAAGAATATAATAAAAGCTTGTAATATGTAATTTCTCATGGGTAAAAAACCTTGCTATTTGTGAGCCTTGATTAATAA ATGAGCTCATTGGAAGTTAATCATGCTTTTGACTTCAGGAGAGAGAAATCCAAATCAGAGGCGGTATCTTCACATTTTTA TAAATATAGTTGAGATAAATACTACTGTTAGTATCTTTTCTTATTTTACAATTGAATAAAATTAGCAAATTGAAGGTTGC ATACTATCATGCCAATCTCCTCTTTTTATCCTTTTCATCACGCACTGCTTTTTGAACTTCCAGATTGTAAAAGTGGTCAA GAAAAAATGCCCCGAGACACCAATCGTTCTTTATATAAATGGAAATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAG TTGATGTTATTGGACTAGACTGGACAGTGGATAAGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGA AATGTGGACCCTGCCTCCCTATTCTCCCCTCTTTCTTCCCTTACTGAAGAAATTCAGAGGTTGGTAACAACATATCTATG ACCTTTGGTATTTTTTTATGTCATTCTGATAGGTACAGTAAATGAGAAGAAAAATTGTTATTATTCACCAATATCAATGA ACTACAATTACTGGTTGTTTGAGAGAACCAGCACACTCCCTAGAATTCCCTTACTACAAACAAGATACCCTAACTATTCT CATATCCCTCTTATTTATAGTCTTGCTTCACTCTCTCTAATCTCTAACCAACTCTCTAACTAACAACATGATTTTCCTAA CTAACTAACTAAATAACTAAAGGGTGGTTATCTATCACAATCTATATGGTTGTTGGCATATTTGGTCTAAGGGAGCTACA CCACTGAGTGGTGTCTAAGCTTAAGTGATGGGAGGAAGGGGAATCGGAAAGAGATTTTCCATCAGGGGGTGCTGAACCTG ATACTGGGATGTTCCAGACAAATGTCCAGGCTGTATTGTTTCTGTCCATGATCCATTATCTAAGCTGTGTCGGTTGAGAC CTCCCCCAACATTTGCCTATTAACTGCAGAACTGAAAATAATGATACGAGTCAGGGAAACTGGCCAAGAATCAGGCAATA TTCTTTATCTTGTTCACGAAGCTACAATATGTAACTTTTACTCTCGACATGCATTGGATTCTGTGTCAAACTGGCAGCCA TACGTGTAGTATGTGTGTTTGGCTGCACTGCAGGCACAAAACCCAGTGTGTTAAATGTAAAAACTGTGTCATAACTTCAT TTTATGTGATTCTAGCATATTATGAAGTGCATCCCAACATTCTATTTGTTTCAAAATTATGAATTGGTTCAATTGGACTA TTGTGCATTTGTGCTTTTTGAGAGAAAGACCACTGTTTTGTCTGACTCGGTGGCAGAAGATGATACCAGTGTGTCCAATT GAACCCTCAGAGAGTCATAGTCATACATGAGAATGGATACATGACTTGTGTTAATTAGTTTTCTTAACTTCTAATATGAT AATTATTTTCAGGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACATCCTTAATCTTGGGCACGGTGTTCTTGTTGGCACAC CTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTGAAATTCGACACACACTTTCAGAATACAACTGCAAAT GATCCTGAACTTGTAATTTAA
CDS sequence (LotjaGi5g1v0022300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGA GACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACA TCCTTACACCTCTACCTGCATTTGGAATTGAATTTGACATAGAAGATGTAAGGGGACCTGTTATACAGTCACCTATTCGC TCTGAGGAGGGATTAAAGGCTTTGCACTCAATCGACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCG CCAGGAGGTTGGTGGTCATGCTGCCGTTTTGGGTTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGG GTACGACACGCACTTACACAACCATTAAGAGCATGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTG TCACAGGCGATAGCAGATTACATTGTTTTCCAAGTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGG ACAATTACCACCTAGTATGTGGGAAAGCTGGTCAAAGCCTTATATCACCGAGATTGTAAAAGTGGTCAAGAAAAAATGCC CCGAGACACCAATCGTTCTTTATATAAATGGAAATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAGTTGATGTTATT GGACTAGACTGGACAGTGGATAAGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCC TGCCTCCCTATTCTCCCCTCTTTCTTCCCTTACTGAAGAAATTCAGAGGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACA TCCTTAATCTTGGGCACGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTG AAATTCGACACACACTTTCAGAATACAACTGCAAATGATCCTGAACTTGTAATTTAA
Protein sequence (LotjaGi5g1v0022300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIEFDIEDVRGPVIQSPIR SEEGLKALHSIDLDRLRFVGDSLKLLRQEVGGHAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPDILRTLLSHL SQAIADYIVFQVESGAHCIQIFDSWGGQLPPSMWESWSKPYITEIVKVVKKKCPETPIVLYINGNGGLLERMVDTGVDVI GLDWTVDKADGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARSL KFDTHFQNTTANDPELVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 333 | 333 | 1.5E-213 | – | |
| PANTHER | 1 | 333 | 333 | 1.5E-213 | – | |
| Pfam | 1 | 319 | 319 | 5.1E-102 | ||
| TIGRFAM | 1 | 318 | 318 | 5.0E-114 | ||
| CDD | 1 | 319 | 319 | 4.84169E-160 | ||
| SUPERFAMILY | 1 | 321 | 321 | 9.81E-93 | ||
| Gene3D | 1 | 322 | 322 | 1.4E-119 | ||
| ProSitePatterns | 117 | 133 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Uroporphyrinogen decarboxylase activity | Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2. | ||
| Biological process | Porphyrin-containing compound biosynthetic process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. |
Expression pattern of LotjaGi5g1v0022300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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