Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0024100 |
| Transcript ID | LotjaGi5g1v0024100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxypeptidase; TAIR: AT3G63470.1 serine carboxypeptidase-like 40; Swiss-Prot: sp|P52711|CBP23_HORVU Serine carboxypeptidase II-3; TrEMBL-Plants: tr|A0A151S876|A0A151S876_CAJCA Carboxypeptidase; Found in the gene: LotjaGi5g1v0024100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4231421..4237602) extracted from Lotus japonicus Gifu genome v1.2.
CGATATGGCACTAATGTTATCAACAAAATCACTATTGTGGTTGTTATTTGTGGTGGTGTCCCACTTCACCATCTCATGCA ACGCCGACCAACAAGGCAAATACCTCTACAAGTTCATTCAGTCACGAAGGTCTCATAAGAAGTCTTCACAGGGAGAAGCT TATGGTGTTAATGGTATGGATCATGAATATTTTTCTCAATCACATGTTGAACAACATGCGTCGAATCAGGAACTGAACCA GGTAGAATAGTACTTAAATGTTGTTTTTGCACCTTTAAATCTTGTATATTATTGCTTCTTTCAATTAAAGATTATTAGTT TTGATCAATGTATTTCTTTTTTGCCAACCTTATCCATTTTCTCTGGTTCCGTACCTGGGTCAAAGGATGCTGATAAGGTG AAGGCTTTGCCGGGACAACCCCAAGGGGTGGATTTTGATCAGTATGCAGGGTATGTCACAGTGGATGCCAAGGCGGGGAG ATCATTGTTCTATTACTTTGTGGAGTCACCTCACAATTCTTCCACCAAGCCTCTTGTTCTATGGCTGAATGGAGGTAACT CTAGAATATTCAATACATTACTTATACATGCATATGATTTTCTGGCCACGTGATTTTGACCAAAAAAAACTGAATGATCA TACATATATGTGGTAGGGTAAACATTCACTTATATTTCTTATCACATATGCGCTTATTTATAACTTGTTTAACAAAAGTT CTTTGCAGCTTCCTTCTGTACAATTACAGGCCATTGAGTTCTGCAGTAGCTAGCTAGGATTAATCTTGTTATATATAAAA TAGTTTATTAAATTAAAATATTAGGGTTATTTTTTGGCCTCATATTTGATACTTTTATCACATGTTGTGTAATTGATAAA TGAACATCATTACAAAATGTAATTAAGAAAAATACAAGAATATGAAATATGCCTATTTGAGAATGTTATTTTTTCCCAAT AAACATCAAATTCCAATGACCCCCTCTATCCCACCCAATATTCCATGGTTAAACACAGCGAGATAGAAATTAGCCTTTTT TGCTGATGATTTCTTAATCATAATTACTTGAGAGGTGATAAGAATGAGATAATTAATTTCCAATCATTATCAACCAATGC ACTAGAACATTAATAACATACACTAGTGGAGTTCCAACACAAAAGTCATGAGTCACGTCGGCCACCAAGCATGATTCCTG AGCAAGAATCTTTCATATTTTTAACACGGTTTTTATTTCTATATATTGCTTCAAAATTTAAGGTAATATTCATGATTATT TGTTAATTATATTTTAAATTTCATTTAATCCTTTATTACATCATTTTATACACTCAGCATAATATTAATTAATAATCTTG AAATTTGAAAAACAACTATATATGTACATATATGTTTTTGGCAAAAATTTTTTTTGGCAAAACTTAACTTGAATAATATA TGTATTGTTTATGGTGTTATCCTAAAAAGGGTCAATTTTCTAACTCATTTGTCATATTTTAATTAGACAAAAGTGAAAAT AACATATATAAAATTGTACCTAAGTTTTGTCCCTGCAGTTTTTTCCACGAGCATGCAATCTAAGCATTTTCAAGGCCTAA TATTGCATTTCATTACATTTTAGGAGAATTTTGTCACTTTGAATATTTTCCTTTTAAGTAATTAGTGGAATGCACACATG GGAACAAAATTTTATAAATGTATACATTATATGGTGATGTACAGGACCAGGGTGCTCTTCCTTTGGGTATGGAGCCATGC AAGAATTGGGACCTTTTAGAGTCAATAGTGATGGAAGAACACTTCACATAAATGAACATGCATGGAATAATGGTAAGAGT TCTCTAGATATATGAAACCTATTATGTTTGTTTCAAAAAATAGTCACTTCTTTTCAAAAAATAATCAATCTTATATTTTT CTAAACTATTTGTGTGTGCTTTTACTAAAAAACTGAATTATATTTAAAAATAAAAACTAGAAATCTGATTATTTCTTTAA GCTATTTCAATTTTCCAGTGAATTTTAAATGAAAAACATTTGTTATATTTGTCAACAAACATACATCAATATCCGCTTTT CAAAATATCATAAAATAAAATCAGTTTCTTTAATTATTTAGCTTTAAAGTCATTTATTTTTGGCTTAATTGCACTTTTGG TCCCCCAACTATACCCTTCCTGCGAAAATCGTCCTTAAACTTCAAAATTAGCAAAAAACGACCCTGAAGTTTACACCCGG TTGCAAAACTGGTCTGCCGTCCAAAACCATCCAAAACTTAACGGATTCTGGGTTAAAAAATGAATTAAAAATTAAAAAAG TGAAACCCAACAACCTTCATTCATTATTCATCTTCTTCAAACATCTTCTTCTTCATTTTCATCCCTGTCATTTTCTTCCC ACATCATCCTCAATTCTTCTATTTTGATTCAAAATTCTATTAAAGAAAAAAACTAAAAGGAGCAGCAGCAACTTCCATTT GGTGTTTCAAAAGAGCGTAGGTGGCAGAAGCGACAACAGAAGCGATGAAAGGTGGCAGAGATGGAGAAAAAGGTGAACGA AGATACCCATAGCTTTGCAGACGAAGTTGAGGTTGCTGATTCGGTCAATGGTTCGGCGACGGTGGCGGGTGATGGTGAAG GAGGCAGATTCAAGCCACCACCTTTCTTCTTCAGATCTGGTCTCTGTTGATTCTGTGTCTCTCTCATTTCATATATTCCT CCCTCCACGACTCCTTCCTCTTTAAAACTCATAAAAGTCCCCCTTTGTTCACCCCCAGAACCCAGAAAACCCACCGATTT TGGAACACCAACACACTTGCATTTTCAAGTTCTGGGTTTTATGGTTGTTTATGGTTTGAGTACTAGATTTGAAGGGGGTC AATTGATCTTCTGCTTCAATTGCTTGGATGTGATGGTGAATTTTGGTTTCGATTGAAGAAGCAGAGAGAAAATGCAGGTT GAGGTGGAAAGGGATAACAAACAAGAAACGATAAAACTCACCTCTTCAGTTTTTCAGGATTTGTTTTTCCTGGATTTGGT TTCCTTTTAATCTGAACAATTTTTTTTTCGATTAAAATTTCAGGTTGTGATCATTTGAATCTCAAATGCTCTCATGAATT GATGTAATATTCTGGGTATTTCTGGATTTCAATTAAAATACTATTATTTTCTCAATTTTATTTTTTATTTATTTTTTAAT ACATTTTTAACAGAATATTCTGTTAGTTTTTAGACGGAATCTAACGGAAAACCAATTTTGCAACTGGGTGTAAACTTTAG GGTCGTTTTTTGCTAATTTTAAAGTTTGAGGACGATTTTCGCAGGAAGGGTATAGTTGGGGGACCAAAAGTGCAATTAAG CATTTATTTTTTAAGCGAACAAAACGAGCATCACAATCTTTTTTTTTTGCATGTTTGCATTGTTGTCTGTGATTCAGAAC TGATGAGTTTCTTCTATAACTGGCAGTGGCAAATGTTATTTTCCTAGAGTCTCCAGTTGGAGTTGGCTTTTCATATTCAA ACAATTCATTACGTGACTCAAAAAATGGTGATCACAGAACAGCCATGGATTCATACACTTTCCTTCTTAACTGGCTGGAG AGATTCCCACAGTATAAAACAAGAGACCTGTTCATAACTGGTGAAAGTTATGCTGGCCATTATGTCCCTCAGCTTGCTCA CATTATCCTATCAAAGAATAAGTTACATAAAAGTCACACAGTGATAAACTTGAAAGGGATCGCGGTGAGTCATCAATCCT GTCACGAATATATTATCCCAAAACCCACCAATTTGAAGATACATGAATAGTTTTATATTATATTTATAATGCATCCCTTC ACGGTGACTTACAATGCACATGTTTATCTACCTTGTGTTCATATTCAACTTTTTATTGAAATAATAGGTGGATTGAACTC TACTTGGCGAAAGTGTTTTCAATTGCAGTTTTGGCTGCAATTATGTAGGAGAATCACATACAAATACAGGTTGTTGCAAC TGCAATTGCGAGGACTAAGAAACCATTTACGTTGTAGTCGCAATTGCAATTGTAGAAAACAATTGAAAAAACTCTACTTG GTCATAGAGACTTTGATATTATATCAATCATACTAAAAACCTAAGTTTCTGGGTGAAGACGTGAGCATTGAAAGATTTTC TATAATATTTCTAACAAAATCTTTCAGTGTACAACATATTGAATTTGTTATTTCTTCTCAAACTTTTGTTCTGTGTGCAG ATTGGAAATGCCTGGATAGATGATAATTATTGTTCAAAGGGAATGTATGACTACTTCTGGACGCATGGTCTGATCTCTGA CGAAACCCATAAAGGACTTCAAAAACATTGTAACTTTAAGCATGCCAACCTTACAAGTGAATGCAACAAGTATGCAGACA GAGTAGATGAAGAGCTAGGAAATATTGACATATACAACATATATGCTCCACTTTGCAATTCATCAGAAAGTCATGCCACC TACACTGTAAGTTGCATGCATGTTGCAATTGTTACATTGTTGTTTGTGAAATCTCAACTTGCAATGTGGGGAAAACATTC AAGGGTAGTATTCTATTTCTTCATAGTAAAGTTTAATAGCAAGTTTGGATGAGTTACTCACAAACTCATTAATTTTAACT TTATAAATCAATTGTAACTTTCCAACATGCACTAACTGCATTTATTTTCATTCTTGACTTTGATAGTCTACTATATCGAT CTAATTTTAAAATAGTCCAACAGTAACTACATGTCATATACACTTAAGTGTTCTCTTAAAATATTTCTTCTTAATCACAT AAGATCATATATCACATCTATCAATTCTCTTTTTTCTTCTCTTCCTCCCCCTCTCATATTTCCTTTTTAATGTTACGCCT CTATCATATATTATTGTCATGTTAAGTTGGTTGTCTACCTAAGATTTTCACTTAATCCAAAGGGTTATTAGCTATACTCA AATAAGATCAAAGTTTTCATCCTATATCAAAAAACCTGCAATCATCCAATTTATGTCACTCTTATATATGGAAAACAAAA TCGACAACAACATTACTTATCACTTATCATAAAAACTTAAGATAAAGTTCACATAAATAAAGAACACTAAGATTCCATAA AAAAAAACACAAAGATCATTCTATGATGTTTATAAAAACTAAATCAGAAATTGTTCTATACTCAACAATACAGGGCAACG ACATTGACCCTTGTTCTGATGATTATACCACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGCTCTTCATGCTAAGGCA ACAAAATGGTCTCCTTGCAAGTACGCACAACTTAGCAATTGTTTTTCTTCCCCATAATTGTTTTTTATTTTCTGAATTAA AGTGTTAATGCTTCTTTTCAGCGAAATGGATTGGACAGATAGTCCAACAACTATTCTGCCCATTATAAAACAGCTAATAT CAAGTGGTCTAAGAACTTGGATATTCAGGTGAGGGTTACAATTTGCTTCATTATGTGCAAGACATTATCACAGTTTTAAG TGAAAGGCAACATATTTCAATAGTTATACGAATATCCATATAACATCACAATATTTACAGAACATATGATAATATCAATA AGATTTTACAAGTGTATCAATATCTCAGTAATATATCGCAATATCTTGTGAATATCTCATCATTGTTTTTCAATAATGCA GTGGCGACACAGATGGTCGCGTTCCCATAACATCTTCAAGATATTCTGTGAATTCCTTGAAACTTCACGTGGACACAACA TGGCGTCCATGGGGCTCTGGCAATGAGGTAACGAAACATCTTTACTCTGTGTTCAAAACTTACCAACCATAGGAAGGATT TTATATTATACGTCTCACACCGCACAATATATATATATATATATATATATATATATATATATATACACAGGTTGGAGGAT ATGTTGTTGGGTATAAAGGTCTCACATTCGTTACAATAAGAGGAGCTGGTCACACGGTTCCGAGCTACCAGCCAGAGAGA GCACTAACTATGTTCTCTTCTTTTCTCCATGGAAAACTTCCTCCGAAATTAATCTCTTAAGTCTATTTGTTATATGCATA AAATTGATATGGAAATGTGATAGATGATTTCATATAAAAATTCATCTATGAAATTCTCACATGTAATTTTTTTTTTGTAA AAGTAGAACAATAAAATCGCTC
CDS sequence (LotjaGi5g1v0024100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTAATGTTATCAACAAAATCACTATTGTGGTTGTTATTTGTGGTGGTGTCCCACTTCACCATCTCATGCAACGC CGACCAACAAGGCAAATACCTCTACAAGTTCATTCAGTCACGAAGGTCTCATAAGAAGTCTTCACAGGGAGAAGCTTATG GTGTTAATGGTATGGATCATGAATATTTTTCTCAATCACATGTTGAACAACATGCGTCGAATCAGGAACTGAACCAGGAT GCTGATAAGGTGAAGGCTTTGCCGGGACAACCCCAAGGGGTGGATTTTGATCAGTATGCAGGGTATGTCACAGTGGATGC CAAGGCGGGGAGATCATTGTTCTATTACTTTGTGGAGTCACCTCACAATTCTTCCACCAAGCCTCTTGTTCTATGGCTGA ATGGAGGACCAGGGTGCTCTTCCTTTGGGTATGGAGCCATGCAAGAATTGGGACCTTTTAGAGTCAATAGTGATGGAAGA ACACTTCACATAAATGAACATGCATGGAATAATGTGGCAAATGTTATTTTCCTAGAGTCTCCAGTTGGAGTTGGCTTTTC ATATTCAAACAATTCATTACGTGACTCAAAAAATGGTGATCACAGAACAGCCATGGATTCATACACTTTCCTTCTTAACT GGCTGGAGAGATTCCCACAGTATAAAACAAGAGACCTGTTCATAACTGGTGAAAGTTATGCTGGCCATTATGTCCCTCAG CTTGCTCACATTATCCTATCAAAGAATAAGTTACATAAAAGTCACACAGTGATAAACTTGAAAGGGATCGCGATTGGAAA TGCCTGGATAGATGATAATTATTGTTCAAAGGGAATGTATGACTACTTCTGGACGCATGGTCTGATCTCTGACGAAACCC ATAAAGGACTTCAAAAACATTGTAACTTTAAGCATGCCAACCTTACAAGTGAATGCAACAAGTATGCAGACAGAGTAGAT GAAGAGCTAGGAAATATTGACATATACAACATATATGCTCCACTTTGCAATTCATCAGAAAGTCATGCCACCTACACTGG CAACGACATTGACCCTTGTTCTGATGATTATACCACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGCTCTTCATGCTA AGGCAACAAAATGGTCTCCTTGCAACGAAATGGATTGGACAGATAGTCCAACAACTATTCTGCCCATTATAAAACAGCTA ATATCAAGTGGTCTAAGAACTTGGATATTCAGTGGCGACACAGATGGTCGCGTTCCCATAACATCTTCAAGATATTCTGT GAATTCCTTGAAACTTCACGTGGACACAACATGGCGTCCATGGGGCTCTGGCAATGAGGTTGGAGGATATGTTGTTGGGT ATAAAGGTCTCACATTCGTTACAATAAGAGGAGCTGGTCACACGGTTCCGAGCTACCAGCCAGAGAGAGCACTAACTATG TTCTCTTCTTTTCTCCATGGAAAACTTCCTCCGAAATTAATCTCTTAA
Protein sequence (LotjaGi5g1v0024100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALMLSTKSLLWLLFVVVSHFTISCNADQQGKYLYKFIQSRRSHKKSSQGEAYGVNGMDHEYFSQSHVEQHASNQELNQD ADKVKALPGQPQGVDFDQYAGYVTVDAKAGRSLFYYFVESPHNSSTKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGR TLHINEHAWNNVANVIFLESPVGVGFSYSNNSLRDSKNGDHRTAMDSYTFLLNWLERFPQYKTRDLFITGESYAGHYVPQ LAHIILSKNKLHKSHTVINLKGIAIGNAWIDDNYCSKGMYDYFWTHGLISDETHKGLQKHCNFKHANLTSECNKYADRVD EELGNIDIYNIYAPLCNSSESHATYTGNDIDPCSDDYTTTYLNLPEVQEALHAKATKWSPCNEMDWTDSPTTILPIIKQL ISSGLRTWIFSGDTDGRVPITSSRYSVNSLKLHVDTTWRPWGSGNEVGGYVVGYKGLTFVTIRGAGHTVPSYQPERALTM FSSFLHGKLPPKLIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 18 | 9 | - | – | |
| Phobius | 19 | 27 | 9 | - | – | |
| PANTHER | 25 | 491 | 467 | 3.4E-226 | – | |
| PANTHER | 25 | 491 | 467 | 3.4E-226 | ||
| Phobius | 28 | 495 | 468 | - | – | |
| Gene3D | 76 | 347 | 272 | 1.0E-108 | ||
| SUPERFAMILY | 84 | 488 | 405 | 1.26E-130 | ||
| Pfam | 88 | 487 | 400 | 7.8E-138 | ||
| PRINTS | 165 | 177 | 13 | 4.6E-28 | ||
| PRINTS | 178 | 188 | 11 | 4.6E-28 | ||
| PRINTS | 214 | 239 | 26 | 4.6E-28 | ||
| ProSitePatterns | 228 | 235 | 8 | - | ||
| Gene3D | 350 | 489 | 140 | 4.2E-36 | – | |
| PRINTS | 457 | 470 | 14 | 4.6E-28 | ||
| ProSitePatterns | 457 | 474 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi5g1v0024100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…