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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0024700 |
| Transcript ID | LotjaGi5g1v0024700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-symbiotic hemoglobin 1; TAIR: AT3G10520.1 hemoglobin 2; Swiss-Prot: sp|Q9FEP8|LGB_LOTJA Leghemoglobin; TrEMBL-Plants: tr|Q3C1F7|Q3C1F7_LOTJA Leghemoglobin; Found in the gene: LotjaGi5g1v0024700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4294209..4295695) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATTGGATGTGAGGTTGTATCATCAGAGAACACAAATAACAAAAAGGAAAAAAAGAAAAAGAAAAATGGGTTTCACT GCACAGCAAGATGCTTTAGTGGGTAGCTCATATGAAGCATTCAAGCAAAACCTTCCTAGCAATAGTGTTCTGTTCTACAC CTTGTAAGTCCTATCTCTCAGTGTGTCTTTGATTTATGTGTTTTCTCTTTTTGTTGTTTTGTTGTGTGTTGGAAACAAAT GATGTAAATTAATGTGACCTCCTTTAATCTTGATTTGATTAAAAAAAGAATATTGGAAAAAGCCCCAGCTGCTAAAGACA TGTTCTCCTTTCTAAAGGCTTCTGGACCCACGCACAGTCCTCAACTCCAAGCCCATGCTGAAAAGGTTTTTGGACTGGTA AGTGAAATCTAGCATAAAATTGTATTCTGTTTACATTCTTCTATCAGTTCTATGAATGCCAGTGTACTATTATGTTATAT TTTTTGAACCATAGACACGCGATGCGGCTGCTCAACTCTTAGCAAAAGGAGAAGTGACACTTGCAGATGCCGGCTTAGGT GCTGTTCATGTTCAGAAAGCAGTTGCTGACCCCCATTTCGCGGTAAAAATTTAAGAGATGTGCATTCTTAAATTGAACAA ATACCTATAACACTTGTTACATAATGCTATTATTGTTTTGCAGGTGGTTAAAGAAGCACTGCTTAAAACAGTACAGGCAG CGGTTGGGGACAAATGGAGTGAGGATTTGAGCACTGCTTGGGGAGTAGCTTATGATGGACTCGCAGCTGCAATTAAGAAG GCAATGAGTTGAAGTAGGAATATATAGCCATAATGGCATAAAATATTTCTATAACCATATGTATTCCAATAAAACTTATT ACAAATAAATTCAAATAATATATTGAATACAAATTTGTCAATTCAATTAATGATGTTTCTGGTTTTGCATGCCTTTCCCA TAGGGTTAAGGATGCAATTTGGGTTTGGGTTTACCGTGCAATTTGACAACATTTAACAGCGAAAACTTTTTATAAGTATG ATTAGATGCCAATTTTTTTTAGATAATGTCATTGGAGTCCTCCACCTTTGGGGATTGTTAAATTCTATGAAAGAAAAGGA TGGACTCTCAAAACATGCATTTGCACATTAGTGATGCAGTGATGCTGAATCATGAGATAGCGTTGAGCATTGAAATTAGA CATTCATGAGTATACTTAAAGCAATGATTACGATAGAGTATGACAAAGGTGTTAAGTAATTATACTAGGATTGTAGCCCG TCTCCGTGCAATGCACGGACGAACTGTTTTACGATTTATCATATTTATTCCATCAATTTATTAAACCCCATTTAATTAAC TCCCATGCCAAAAATTGTAATTTTTAATCATAATAACTCAAATATGGCTTAACCAAAACATTGGGGACAATGAAGTAATT ATATATGTATAACAAAGGTGTTTGCGGTGTTTTCTTTGTGAAAATAA
CDS sequence (LotjaGi5g1v0024700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCACTGCACAGCAAGATGCTTTAGTGGGTAGCTCATATGAAGCATTCAAGCAAAACCTTCCTAGCAATAGTGT TCTGTTCTACACCTTAATATTGGAAAAAGCCCCAGCTGCTAAAGACATGTTCTCCTTTCTAAAGGCTTCTGGACCCACGC ACAGTCCTCAACTCCAAGCCCATGCTGAAAAGGTTTTTGGACTGACACGCGATGCGGCTGCTCAACTCTTAGCAAAAGGA GAAGTGACACTTGCAGATGCCGGCTTAGGTGCTGTTCATGTTCAGAAAGCAGTTGCTGACCCCCATTTCGCGGTGGTTAA AGAAGCACTGCTTAAAACAGTACAGGCAGCGGTTGGGGACAAATGGAGTGAGGATTTGAGCACTGCTTGGGGAGTAGCTT ATGATGGACTCGCAGCTGCAATTAAGAAGGCAATGAGTTGA
Protein sequence (LotjaGi5g1v0024700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFTAQQDALVGSSYEAFKQNLPSNSVLFYTLILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGLTRDAAAQLLAKG EVTLADAGLGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSEDLSTAWGVAYDGLAAAIKKAMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 144 | 144 | 1.2E-47 | ||
| PANTHER | 1 | 146 | 146 | 5.0E-64 | – | |
| SUPERFAMILY | 1 | 143 | 143 | 3.62E-32 | ||
| PANTHER | 1 | 146 | 146 | 5.0E-64 | ||
| ProSiteProfiles | 3 | 143 | 141 | 26.255 | ||
| PRINTS | 4 | 21 | 18 | 5.3E-39 | – | |
| Pfam | 7 | 111 | 105 | 1.9E-15 | ||
| PRINTS | 29 | 49 | 21 | 5.3E-39 | – | |
| PRINTS | 55 | 83 | 29 | 5.3E-39 | – | |
| ProSitePatterns | 55 | 66 | 12 | - | ||
| PRINTS | 117 | 143 | 27 | 5.3E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxygen binding | Interacting selectively and non-covalently with oxygen (O2). | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi5g1v0024700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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