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LotjaGi5g1v0025800.1

Overview

Field Value
Gene ID LotjaGi5g1v0025800
Transcript ID LotjaGi5g1v0025800.1
Lotus japonicus genome version Gifu v1.2
Description 26S proteasome regulatory subunit; TAIR: AT5G23540.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 homolog; TrEMBL-Plants: tr|A0A1J7HGT4|A0A1J7HGT4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0025800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:4391629..4397963) extracted from Lotus japonicus Gifu genome v1.2.

ATCCTATTTAAGCAAGCATCACTGGTTTCCTGCTCCAGAAGCCATTAGCATTTAACAAAGCAAGGTTTACAGCAACACGA TCCACACAGAGAGAGAAGAGAACTCTCTCTTTGCTTGCCACAAAATTCAACTGAATTCCAAGCTTCTGTGTTTGTTTCTG TAATTGGTGGTTTTCATGTCGGGTATGGAGAGGCTTCAAAGAATGTTCGCGGGTACAGGAGGAGCACTGGGTCACCCTCC ACCTGATTCCCCCACCCTCGATTCCTCAGAGCAGGTTTACATCTCCTCACTCGCTCTTCTCAAAATGCTCAAACATGGTA ATCACAATGCTCCTCTTCCTTTTCTCTCAATTGATGATTCACTTCACCAACCCCAATTTTGAACGAAACCCTAATTTTTT CGTACAGGTAGGGCTGGTGTGCCGATGGAAGTGATGGGTTTGATGTTGGGGGAGTTTGTGGATGAGTACACTGTGCGCGT TGTTGATGTGTTTGCTATGCCTCAGAGTGGTACTGGTGTTAGCGTTGAAGCTGTTGATCATGTATTTCAGACTAACATGC TTGACATGTTGAAACAGACTGGGAGGTATTTCTTTACTTCTATCAAGTTGTTTTGGATTAAGGGTTCTCTTGAATTTTAT ATTTTTATGCACTAGTTAAATGGGAAGGTGGAGAAGCTTTGGAAGTAGTTGACTTTTTCCTTTTGAAGTATAAATAAAAA TGGAATGTGTGAAATGTAAACATGAGCTATGCCAATTATGTGAAAATTGCTGTACCATGCCACAAGTCACTCAGCTCAAG TGTTTAGAGGGATAAATGGGGATGTGAAACATAGAATTCAAATAAGGTAGAGAAAGCAGAGGAGTTCTACCTCTTAAACT TAAGAAAAATGATTACTTTTGCAGTTATAAAGATCTGCAATGTGATATGAGATTGAGTGTGTATGGTAGAGAGCCAACTA GACAATATGTCAATATCAATATTGCAGAAATAAGAAATCTAAGATTAGAAATGATTACATTGGAGAGAAAGTTTAGGAGT ACCTCTAAATGGAAAAGATGCTAAAGTCTCACTTTAGGTGATTTGGGCATGTGTGGAGAAGATCTGAAAATTCTCAGTAA GGATAGTAGATTAGATAGATAGCAGCTCAATTGTTAAGTTGGAGAGAAACCAAAAACGTGTGTGTATTATTCGTAGGTCA GTCCTTTGAGAAGGATTTAGATTTGAGTGACTGGTGATTGGACATGAATCCACAATACATGATATGACATCCTTGCGTCG TTTAATTAGTCAACTCCGCCAACTGGAAAAAGAATTTTCCTATTGTTGTATAACTGTGCATTTAGTTATAGATTGTCATC CCATGCTTTATATATGTCGACATGAATGATGTCTTGATTATTTTACATCAGTTAGTTGAAACTTGGACTCTTTGTTTCAG ACCAGAGATGGTTGTAGGTTGGTATCATTCACATCCTGGATTTGGCTGTTGGCTTTCTGGAGTGGATATTAATACACAAC AGGTTTCAGATTCTCTTCAGTCTTTAGTTTGTCATGGTTGCATGAGTTTGTGATGTTGTATTATTTTTGTGCTTGAGACT AATTGGATATTCTTATTAGAGTATGATATTTATATTCTTTTATTTTTTTCAAAGAAAAAGTAAGGCACACACTAAATGTG ACACATCTCTTTAAATTCAGAAAAACATGATAGAGTGAGAGCAGGAATGAGTGACAGAAGGCGGGGGAAGAATGGGATAA AAAATAGTGAGGAGAGTCTGCGATTTATTTTAATTTTAATCTATGTTATTTATATACCAGACATGGAAAGTAAAACATGA TTTTTATGGAACTTCTGGGGGTGAAAAATAAAGGTGGATGACTACCTTCTTTTTATTAGTAAATATGGACGTATAGACAA GTTAACTAATTTCTGGGCTTTAGTTTGGCTGGTCTAATTTCAAATGAAAGCAGCATCAATTCAGCAAAACATATTTTTTG GGTACATAGGGAAGTGCAATTGTGCAAGCACCTGTGTAGGAGAAGGAATATGTAAGGTGGTGTAAGGATATTGTTGGATA TCTAAGGCTCTAACATCATCATCATTGACTCATCACATTCCATTCTTAGATAGGGGCTGATGGAAGTTGAGTTACAAGCA TGCTAGCTGAGTGATGGAAACTTGTGGAGAAATAATAATGCTTCAGTCGTGAAATTGTACAATAGTTTTTTAGTGTTTAC TATTGATAAAAAAAGAAGATTTTTATATCACTTTGATTTGAATTTACTGCAATTGGATTAAGAAATGAATCTCTGGGATA ATTAGTAATTGTAACTCACTGTAGACTGGGAAGCTTTTACATTAACTTTTGAATTTAATTAAGCCATGACAATGCCTTAT TTAGAATTTTAAGTATGTGTATTCTTTTCATCTAATACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGG TGGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTGATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTCGGT CAGGAACCGCGACAGACAACCTCTAATCTTGGTCATCTGAATAAGCCATCTATTCAAGTGAGTATTCTGGAAATTCTATT CAAGAGAATATCCTGCATTTATCTGTTTGTCTTTTGTCTTTGCTAACTTTCACTCTTATTCTGTTGTTTAGGCTCTGATC CATGGCTTGAACCGACATTATTACTCCATAGCAATTAATTACAGGAAAAATGAGTTTGAAGAGAAGATGTTACTTAACCT TCATAAGAAGAAATGGACTGATGGGTTAACACTCAAGCGTTTTGATTCACATTCTAAAACTAATGAACAGACTGTTCAGG TAAATTAAGAGTTTCCATTCTAATCTGAAATAGGAAAATAGAACATTCAACGTATTTGTTTCTGTTATCTTCTTTCCACT TTCAACACTTATTTTAATATTTCTCACTTCTCTTTTCTGAATTTATTGCTTATGTGAGAATTGCATGAATAATACATAAG ATTCTTCACTGTGTATGCATCCCGTATACGACAAAGTAGCCTGTATAAATATAACCATCTGCTTTCATGACTATGCTGCA CAACAACAGCAGCCAAGTCATTTTTTCCATCTAGGTGGGGTTGGGTACTTAATGTTGGGGAGAGTCACGGCGAGGACCCA TGGTCCAAGGCCTAGAGGAGACACCGAGGAGATCTTGGACACCTCATCTTAACCCAAAACCTTAAGGCATTAGGTTTATG GGTCACGTCTCTTATAAACTCTCCCTCTCACCTTGACTTCTCCGATGTGGGACTTGACTCCAACACTTGATTCCAACAAT CTCCCCCTCAAGTGTGAGTCCTTCAACCACATCACTCATGGTCCTCCCGTCTGCGGAAGCTATCCACCTTGCACCGCCGT TCACTGCCAACGGAACCCGCCGCCTAGCCACACTGCTATGAAGACTTTCGACACAAGGAGCCGTCATGGTCCCACGAACC ATCGGCTCTGATACCACTTGTTAGGGAGAGTCACGGCGAGGACCCATGGTCCAAGGCCGAGAGGAGACACCGAGGAGATC TTGGACACCACATCTTAACCCAAAACCTTAAGGCATTAGGTTTATGGGTCACATCTCTTATAAACTCTCCCTCTCACCTT GACTTCTCCGATGTGGGACTTGACTCCAATACTTGATTCCAACAATACTTAAATCTCAGAATGCTCTTGCATATATTAAA TTTACAGATTGACAATTTACCTCTAAATATCTCTTGGTCTCACTCTATTTCTAAATTCTAACTACTAGATCCTGTTGCGC AGCAACAATTAAAAGTTGATGTAGTACTTGATTCGAGATTCTGCGATATGATTTAGTAAATTTTAAAAACATACGGAACT GATTGGTTCTTTTTTTTCCGGTACTTTCTGTCTCTTGTCTCCCTTTTCTACCTTCCCTCCTTCCTTTTTTTCTTTCCTGG ATGATATTGTGGGTGTATACCCGAGGGTTTGCTATAATGATTGGGAAGTTGGGACCCTTGACCTGTTATTATTTGATTAA TGGCTCATATTTTGCTTGCTTGGGATGATCCACCACAGCTATGAATTAGTAGAATCACCATAGAAACTTAAGAAAGGGTG ATTCTGAAAGTAATGGTTGGTTTCAACAGATTTATATATAATATTATACTGTACTCAAAGGAGACAATCTTTCTTCTATT TTCATCTTTTTTTGTTTTCTGGTAATTCAGGAGATGTTAAGTTTAGCAACAAAGTACAACAAGGCAGTGCAGGAGGAAGA TGAGCTGCCACCAGAGAAACTTGCAATTGCTAATGTGGGAAGGCAGGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCA ATTTGATGTCTTCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACTGTTGTGTTCTAGAGATACTTGCCACCATCC AATGTATTTTCATGCTTATAATGCCTTGGGATGGTTCATAGCACTTTTTACTTGTTTGTAACAGAAATTATTTTATCAGT TTCTGCATATTTTTATTTGTGATTTCAAAAAATGGAGGAGCGTGTTGCATGTTACAGGATGAGAATTATACTTTGAGCTC TATAAATGTCAAGCACACCCTCAGGACCTGCACTAGAGTTTTTTACTTTTGTGTCTTCATTATTACGATTATTAATTGAT TATCCACAGGTCATATGCATGTCAATTGACAAATTAAGCCTGTTATGAAACACTGGAACTCTTAGATAGCTTGGCTGTGC TAAATCATATGGTTGTAGGCTTGTAGCATGTAAAAATCAGAAATCTCAAATTCAAATAACTGATTGAAATGGAACTTGTG GTCACAGCTTCATAACCTTGTCATCATACTTCAATGAGCTGGTTTACATGCTTGGAAGGAAATACATACTCCACAATTTA CACTGAACATGGTAATGTTGTTATCTTCTAAGCCCACTTCCCCAAGAATATTTTTAAATTCCTTGAAATCAGAATAGAAT CATATACACTAATAATATACCAACACATCTTGGTGTAACCAGGCAGGAAGTAAGATTGAGATATGAATTATATGAATGGT GCTCGTCATCATCCTGTCAGTGCCCATGAAGCCAAAGTTTGATATCCTGTCAGTTGAGGTTCAGGACATGAACATCGCCG CCGACAACCCAATCGGAACCACCGCCTCCATCACCCTCACCATTCGCCTCATCTTCGAAGCTGATAACCCCAATAAGTTG GAGATCAAGTACGGCGAGTCCAGGTTCACCATCCTGTACGATGATATCCCACTTGGCAATGCCTCAGTTTCAGGGTTCTT CCAGGAAGGTCACAGTTCGAAACAAGTGGTCGGAAGAACCCTGGAACGAAGGCATTGCCGAGTGGGATATCACCGTACAT GATGGTGAACCTGACTCGCCGTACTTGATCTCCAACTTATTGGGTTATCGGCTTCGAAGAGGAGGCTAATGGTGAGGGTG ATGGAGGCGGTGGTTCCGGTTGGGTTGTCGGCGGCGATATTCATGTACTGAACCTCAACTGACAAGATATCAAACTTTGG CTTCATGGGCACCGACATGATGACGAGCACCATTCATATAATTCATATCTCAATCTAACTGTAAAATTCACTTGCAGCTA GCAGCACAGTATAATTGATCCAAAAAAAAAAAGAGTAGCAGAGAAAGGTGCAGACATGTGCCGTCAAAGGTGGCAGCGAT AGGGTGGAAGATTGGAATCCAAAGAATGCCTACAATTGATAATTTGACAAATAGAGAATTGAATTTTCCTAACAGCTCCT CTGCTATGTGAAAATAATCTGGTTTTCAACTGTTTGGAGTGTCTGGCTTTGTATGAATGAAGTTAGATTCAATGCAGGGA GCTTTGCGGTGGAAGATATATGTGACTTGATCAAATGGAGGGCTTGGTTATGGCTAAGGGTAACAAGATTTCAACTCTTG AATAGGTTGAAGGGAAAAGCGGAAGAAGAAGAAGATACCAGAAACTGTGTATTGAATGAATGAATGTAATCTACAAAGGG GTTAGGCTTTTATACAGAGTGTCATAGTTTTAACCATAAGCCTTAACCAATTAACAACTATGGTTACAATATACTCAATA AAGGGCACGAGTAGCAGCATTTAAGGCTTCCTACTATGAGTGGGAATCACATCCTATTTGTTGTCTAATTAGAGGTGCAC CTGATGGGTGTTGATCTTGCGGTTTATATAGCTGATTTTGAAGGCTTCCTACTATGAGTGGGAATCACATCCTATTTGTT AGTGGGGCATCACGT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0025800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGGGTATGGAGAGGCTTCAAAGAATGTTCGCGGGTACAGGAGGAGCACTGGGTCACCCTCCACCTGATTCCCCCAC CCTCGATTCCTCAGAGCAGGTTTACATCTCCTCACTCGCTCTTCTCAAAATGCTCAAACATGGTAGGGCTGGTGTGCCGA TGGAAGTGATGGGTTTGATGTTGGGGGAGTTTGTGGATGAGTACACTGTGCGCGTTGTTGATGTGTTTGCTATGCCTCAG AGTGGTACTGGTGTTAGCGTTGAAGCTGTTGATCATGTATTTCAGACTAACATGCTTGACATGTTGAAACAGACTGGGAG ACCAGAGATGGTTGTAGGTTGGTATCATTCACATCCTGGATTTGGCTGTTGGCTTTCTGGAGTGGATATTAATACACAAC AGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTGGTGGTGGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTGATT GATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTCGGTCAGGAACCGCGACAGACAACCTCTAATCTTGGTCATCT GAATAAGCCATCTATTCAAGCTCTGATCCATGGCTTGAACCGACATTATTACTCCATAGCAATTAATTACAGGAAAAATG AGTTTGAAGAGAAGATGTTACTTAACCTTCATAAGAAGAAATGGACTGATGGGTTAACACTCAAGCGTTTTGATTCACAT TCTAAAACTAATGAACAGACTGTTCAGGAGATGTTAAGTTTAGCAACAAAGTACAACAAGGCAGTGCAGGAGGAAGATGA GCTGCCACCAGAGAAACTTGCAATTGCTAATGTGGGAAGGCAGGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATT TGATGTCTTCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACTGTTGTGTTCTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0025800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGMERLQRMFAGTGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQ SGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVI DAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNEFEEKMLLNLHKKKWTDGLTLKRFDSH SKTNEQTVQEMLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10410
3 310 308 3.1E-274 –
PANTHER
PTHR10410:SF22
3 310 308 3.1E-274
IPR035299
Gene3D
G3DSA:3.40.140.10
20 237 218 6.8E-74 –
CDD
cd08069
23 289 267 4.9717E-157 –
Pfam
PF01398
30 141 112 2.3E-32
IPR000555
SMART
SM00232
33 168 136 1.1E-48
IPR000555
SUPERFAMILY
SSF102712
34 171 138 1.7E-19 –
ProSiteProfiles
PS50249
34 169 136 36.302
IPR037518
Pfam
PF13012
176 295 120 6.1E-14
IPR024969

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008237
Molecular function Metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Subterm of
GO:0061578
Molecular function Lys63-specific deubiquitinase activity Hydrolysis of Lys63-Linked ubiquitin unit(s) from a ubiquitinated protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0025800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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