Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0027100 |
| Transcript ID | LotjaGi5g1v0027100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G42940.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9FMM4|RHG1A_ARATH Probable E3 ubiquitin-protein ligase RHG1A; TrEMBL-Plants: tr|V7CUA4|V7CUA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0027100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4535216..4542055) extracted from Lotus japonicus Gifu genome v1.2.
TAATCCTAATGATAAAAATATATAAATTTTTGGTGCGTGTGTGTAAATAGTAAATATCATTCATGTTTTGGTGGAATGGA AGCTGCTGTCTCCACCTCCAAGGCTATGACTTTTGCACACAATAACTCTCCTTTCTCAATTGGTTGTTTCTTTGTTTCTT TTGTAAATTGAAATAAAGACACACAACACAACACAACACACCCCTCTTTTAAGTTTAATCTCTCTTCTCTTCTCTTGCCT TCACAATTCTCATTTTCCCATCTCATTTTTGTTTCTGATATCATCGTTTCTCCACCACCCCACCAACACAAACACCCTCT ATTCTTTATCTCCCTTTTCCATTCCTCTACCCAAGGTGTGAAAACGGGTCTATAAAGCAAAAAAATTCATATGGGGTGTG GTGTTTTTCAGTTTTGCTTGTTCTTCTCTTAGTGAGTCATCGGTTTGATTTTCTGATAGATTGGCCTTGTTTCATCCACA CACCGTAAGTTTTCTGCACTTTTTTTTCTGGGTGTTTTTCATTTTTGCTTGTTGTTTTTTGGTCTGATCAGTCTTTGGTT TGCTGGGATTCAGAGACCATAAAGTTTGAATTTTTTTTCTGGGTTTTTTTTTTTTTTCATTTTGTGTGTGTGTTGTGTTT GGTTGGAACATTCAACCTGGTTTTTGTTGGGTTTTGAATTGTTTAATCCAGTTTGGCTCTGAATGGGTTTAAACCCAATT TGTTGTTGCAATAGTCTAGCTGATTTTTGGGAAAGATTGTAGCTTTCTCTTTGTTTTGCTCATTACATTGTGGAAAAAGG AGTTGACTTTGTTTTTCTTCTGTTGGGTTATTGTCTATTTGTCTAGTGGTTGTGCAATTTCGTTTGATGTTAATCAATTG GCATTGCTGCATTAGTGGGTTTTATGCTGCAGGGTTCTCCAGTTGATGAAAGTGGTGTGACTGGTAATGGTGGTTGTGAT GTTTGGAATTGCTTCCCATTATTGTTTCAACTTTCAACAATTCTACTAAATGTGTTTTGAGAGTCTTGCATGTTATCACA TCATGGATGTTTGCTACTTCTGCTTCTTGCCTTCATATTATAATCATCATGCAGTTTCCAGACAATGCTTTACTTACAAA GTGTACTATATATACAGTTGTGGTTGTGGTGCATTATGCAAAAAATTAGAACTTTTTCTGCTGCTTTAGAAGTTTGAATG AGATAACACATTTAAATAATTACTCCATGATGTGACTTGCTGCATTTGAGATTTTTCATGTGCATTTTTTATGCCTAATG ACCGCTTTCGTTTTTTGTTGGACAGATTTGCTAACTTAGTGCATCCGTTGCTGCTTTATTGAGGAATTCCTTTCACATAT CTAGCTGTATTGAGCTGGGAAACTTGTAGATTTCTTCAATGCAAGGGCAGAGAGGTACACTTGGTTCCTTGGCTGAAACA CTAGAATTTGAGTTTGAGTATGGACCTACTCAAGGTACTGCTGCAGCAGATCAGCATAGTTTCTGGAATAATATACTTTC CCCCACTGATATGAATCCATCTTATATCAATTCTGTCAACCATGAATGGCAAAACTTGAGTGGATGGAGCTTAGGTGAGC CCAGTTCCAGTAATACTCTGAATGAGGTTAACACCAATGAGCAGAAAAGGGAGCTAGGATTATCTTCTTCAATGAATGCT GGTGCTATAGGTGGTCCAAGACTGGAACAAAGGCGCTTGGAACCAACCAACGCTTTTTCATTGGACAATGTCAACTCAAG TCCTATGTATATAAGCAACTCCAATTCTCATTTGGTGTCGCAGAATCTCAACTTAAATGCTGGTTTGCCAGATAGTGGCA GTGGTAATAGCTATCATGTGGAGCATCCAAACTTGCACAAGTCTAGTGTACCTAATGTACCGGTAAATGAGCATATTCCA CCTGCTATTGGTTCTGGTTCTTTTCTGCAACCGTCTGGAAGTAACAACATGTTTGTTGAGGATACTGATGGTAGGCCAGG TTATTCTCTTGACACCCGTCGTGTATCTTGTAAAAGAAAGGCAATTGAACGAAGTGTTGGACAATCTTCAGATGGCGGAA GTTCTGGCTATACTCAGCATACAGATGGTAGCGCATGGAACATTCTTCCTACTCAGGATTATGCAGGGAGCATTTTTAAC AGATCTGCACCAGCAGAACAGGCCAATGCAAGACTTGGACTGAGTATGGGGGGTGGAGCCTCTGAAAGCATTCCTGAATC AAATGTTGCAGGAAGCTCAGAAAGCTTCCACAGAAATTTCCGTTTGAGGGTGAATCCTTCAAGCCAACAAATTCCTGTTC CTCCCACTACATTCTCGAATGGGAGTGTGATCAGGAATTCTGCTGTTCCTTCATCCCTGCCAGTATTCCAACGGTTTCAT CCTGTTGATAATTCTCAGGACTTGAGGCCAGTACCACCGGCAGTACGACCGGCTGATGCCATGATTCCTCAAAGCCAGCC CCTTCGGATTCGTGATTTACAAAGAAATATAGAGTCATTCAGGCGGAGTGGTGGTTCTAGCTCAACAAACAACCATTCAC CGAACCCTGTTATATCTGCAAACAGGGATCCTCGGCCGAATGAGGAAGGGAGCTCAAGAAATATGCCTCGGAACATTTTA GAACACCCAGTCTTCGTACCTCCTACCAATATAAGAAATGTGGTTCGAAATCCAACTAGAGCTCCAAGTAGTGCAAATGT AAGCATTCCTGGAAATGTTGCTCCTTCAAGCATTCCTGGAAATGTTGCTCCTTCAAGCATTCCTGGAAATGTTGCTTCTT CAAGTATTCCTGGAAACATTGCTCCTGCAAGCATTCCTGGAAACATTGCTCCTGCAAGTGTTCCTGGAAATGTTGCTCCT TCAAGTATTCCTGGAAACGTTGCTCCTTCATTGCGGACTGGTTTAAATTCAACTATTAATTCATCAGCTGCCTCGGCTTG GGTTTCTCGTCCCAATCCTCAGCAGTATCCTCGTAGGTTATCTGAATATGTTCGTCGGTCCTTATTTTCCCCTGGTTCTG AAGCTGCTGGAAGTCCAAGCAATAACTATTCTTCTTTGCATGGTCCTCCTACTTCATCTGAATCAAGGGGACCGTCATCT GGGGTTAACCCAGGAGCAGCTTCATGGTTGGAGAGGTCAGCTGATAGTGAGTTTGGAATTCCCCAATCCTTACGATCTTT GGCTGTTGCCGGTGAAGGAGGCAATAGACTTGTATCTGAGGTCTGTATTCTGTTCTATCTTCTCTTGCATTTCAATTTTA TTGTATTTGTCATTTGTACCTGCTGGGACTTTTTTTTTCTTGCCTTAGATGTATGGAAGCATTTGAGCCATCAACATCTT TCTTTGAAATTAAATAGTTGATCAGGAGACTTTTTAAATGGAAATTGTGTTGTTTTGAAATTGTAGTTTCAAGCTCAACA CATTTGGCTCACACAGTGAGTTAAGACTTCATGATTACTTTAGTTCCTCCACCAGTTGTTATTTTAGGCTTAGGCCTTAA GTGTATATTTAAGGAAAGCTCCTCACTGGATGAGGTAGAGTTTAGATTATAACAATTGGCAATGATTTCTGATAAATAAA GTAAAAGTATGGTGGTGGATATGATTATGCTTGTGTCGTGTGGTTGCTTAATCATCAATACTGGATTCGATTGGATTGCT TGAGTTTTGACTTGGTCAAAATAAAATTCAATACAATGTAACTAACTTTTTATTTAAACCAATATTTTTGTTTTTGTGCA GCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTGCGACTTGAGGTTAGTTTTATTTCAAATCAATGGTTTA TGCTGATAATGCACTGGTTTTTAAGGAAGTTTTCTTGGTATTTTTTTTCTGATTTATAATACTACCATTGTGGCTTAAAA GTGGTTCAATTCTGATTCAAAAGATATTTGACTTGACTTGTTGTTTAGCTCCTAGTGTTGATTTTTTAAGTTTGCCCTAA CCGGCTTTGATTTATTTGTAATTCTAATCAGACTTACACTTTGATTCTCAAAAGGCATTTTCTGATTATCAGTTGAACAT TAGCAACTAAGGAATAAGTAATAAGAATCTGCAGCATCAGTTGAGGGACAATTTGGAAAGATGCATGGTGTCGCACATAA TATAGTAATTTCATTACTTTAATAGGTCAGGTAGTAATATGTCCTGCTAGAAGAATGAAATATATCTAAATGCTTACAGA CTGTTATTAAGATGCAACATCATGAAAATCCAGGTACAAAGTATTTGAGGGTTCCAAAAAAATAATTTAAATCTTAAAAG ATTAAATACATCATACTTTCATAAAAAAAATAAGCATGACTTTTCTCTGTATGAATATTTGTGTATTGTGGAATCTGTAG TTTGTGCCAAACTTTCTAGAAATATTCACATAAGTAATTAAGCTCATACTTGTTTTCCTTTTTTTATTTCTGAGCCTATC TATGACTCTTTTCATAACAATTTAAAGATGTGGTGAAGCTCCAATATTTCAAAAAGGAAAAGGAAAAAAAATAAACTACT CTAAACATATCCATGCACCTTTTCTCTATAAATTTTTGTGTGTGAAAGATTGTAGTTATTAGGAATGTTAACAATATCAT AAGCCTTTTTCTCAAATAGTAGCTAAAATTTTGTCAATATTTTGAGAGATCTAATACTGAACCCATTCTTGCAGTTTTTG TTGAATTATTATAGGTATTGTTCATATTTTTGTTTTTTTTTTTCAATGTGCTAGTTAGTGTGTTGCATGAATCCAAGAAA TTTTAGGATGTTCAAATAATGTTTGTAGTTAAGACTTAAGTTAAGACTCCTTTTGGACCATTTATCTGGGTGATTTTTCT GGTTGTCTTGAGCCCACTTCTCAAATTGCTACTGGGTAGTTTAAGTCACTGATATTGGTACTTAACCCCTTTAGCCAGTA AATGCTATTTGGTTGGTTCAAAGAGAAAAGCCATCAGGTGTCTGAGGATTTCAATGTCTTCAGAAAAATAATAGAGGGGG GTCCCAAGTCAATAGCATTTAGTTTCTTTGCCTAAAGTGTTGGGGCCCTACCAACCTTGACATGAGTATGAACACACCAA ACTCAATTTTGTACAACATATAGATGAAGATTTGTCAGGATTTTTAATTCTCCAGGAATATGATCTGACCCCAGAAACAT CCCCATTCCCGAGTTAAAGACATATTAAACATGAATTGTTCTCTGCATACCATCCCATTTAGGTTGTGTGAGCTATTTGA CCGACTTTAATATATTGTGCTAAGCTCTTTTTGTATGACCTGTGCTTTATTTTTTTGTAATAGGATGTTATGATCCTCGA CCAGTCAATGTTTGCTGGAATTGCTAATATTCATGACCGACACAGGGATATGCGACTTGATGTCGATAACATGTCTTATG AGGTAAAGACATATTTCCACATTTGCATGTATGTTTTAATATGTATACTCTTAGTGTCTTTTCCTTCCTTGCTTAATGTG TTTGGATACCAGTTGAGTGCAACGTGAACAGACTTTCATCCTAATCCATAATAGTTCTATTCACTTTTTCCCTTAAAATG TGTGCTAACATCTGTTTATACCACTGTCAACGGATATCCAAATATAAGCTTACATGTTGATGCTTAATTTTATGAGAGTT TCTTGTTATGTAACAGGAATTATTGGCTCTGGAAGAACGCATTGGAAATGTGAATACTGGATTGACTGAGGAGACCATAA TGAAACTTCTGAAACAGAAGAAATATTCGGCTGAACCAGGATCTCAGGGTGATGCAGAACCCTGCTGTGTTTGTCAGGTA AACATGACTGGTTGTGATTTCTTTGTCCTTTTTCAATGCATGTGTGCACATGGCTCATATCTCTTGAATGATGTTTTGTG CAGGAGGAGTACAATGATGGAGATGATATCGGATCGCTCAATTGCGGGCATTTTTACCATACTGGGTGTATTAAACAGTG GCTAATGCATAAGAACCTGTGTCCCATTTGTAAGACAACAGGGTTGGCAAAATGAGACTTGTCTCAAATATTTTCTCTTA AAAGATAAACATGTAGATTGAGATTTAGCCTTTGCTGCCTATTTAATGGCCCTTTACCCGAATTTGTGATTATCATTTTT TGTCTATTTTCCCAAGCCAATGATCTCGATTAAGGACATGAGAGAATTGGTGTGGATGGAGGAGCATTTGTTAACTATAG CTGATAAGACTTGTGTTTCATTTATGAAATTTTTACATGACTTATCTTATTTAGCTTCTAAGCTCGTGTTCCATTGCTTA TATTATATTGCTTCAAATATTTTTGGTTGCGCCTATGGGTTGAACTCTAGCTCTGATTAAAGGAATATCAGAGGGTCACT TATAAAAGAAACTCTGTTGGTAAGTCTGTTTAGTCGAGCAGAGTGTACAAATATAGGAAGGATTGTGAGTGTGTATCTTA GATTTGCAGGGTGACTCTTATTTATAGATGGTGGAAAGTGGAAACCGCTCTATTATGATTGTTATCCCTGTATTTGAGAT ATTATGGGAGTAGTTTTTATGAGAAAACAATTTGTGGTTACTTAGCTAATTCTTTATAAGATTTGTTGAAACGAATAGAC CTAGATCAAGTGTTTGACCCTAGTGAGTGAGAGATTAAGTAGGCTGAGCAATTTGGGCCTTGAATTTGATTCGTAATAGT TTTTGCCTTTTCAATAAAGAATAAGGATTTTCCAAGTCTTTGACATATGTGCTGAGTAGGTTTGGCATAGACACATGAGT ATGCAATTCAATCTGTGTATGTTCATCCTCCTCATACCTC
CDS sequence (LotjaGi5g1v0027100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGGCAGAGAGGTACACTTGGTTCCTTGGCTGAAACACTAGAATTTGAGTTTGAGTATGGACCTACTCAAGGTAC TGCTGCAGCAGATCAGCATAGTTTCTGGAATAATATACTTTCCCCCACTGATATGAATCCATCTTATATCAATTCTGTCA ACCATGAATGGCAAAACTTGAGTGGATGGAGCTTAGGTGAGCCCAGTTCCAGTAATACTCTGAATGAGGTTAACACCAAT GAGCAGAAAAGGGAGCTAGGATTATCTTCTTCAATGAATGCTGGTGCTATAGGTGGTCCAAGACTGGAACAAAGGCGCTT GGAACCAACCAACGCTTTTTCATTGGACAATGTCAACTCAAGTCCTATGTATATAAGCAACTCCAATTCTCATTTGGTGT CGCAGAATCTCAACTTAAATGCTGGTTTGCCAGATAGTGGCAGTGGTAATAGCTATCATGTGGAGCATCCAAACTTGCAC AAGTCTAGTGTACCTAATGTACCGGTAAATGAGCATATTCCACCTGCTATTGGTTCTGGTTCTTTTCTGCAACCGTCTGG AAGTAACAACATGTTTGTTGAGGATACTGATGGTAGGCCAGGTTATTCTCTTGACACCCGTCGTGTATCTTGTAAAAGAA AGGCAATTGAACGAAGTGTTGGACAATCTTCAGATGGCGGAAGTTCTGGCTATACTCAGCATACAGATGGTAGCGCATGG AACATTCTTCCTACTCAGGATTATGCAGGGAGCATTTTTAACAGATCTGCACCAGCAGAACAGGCCAATGCAAGACTTGG ACTGAGTATGGGGGGTGGAGCCTCTGAAAGCATTCCTGAATCAAATGTTGCAGGAAGCTCAGAAAGCTTCCACAGAAATT TCCGTTTGAGGGTGAATCCTTCAAGCCAACAAATTCCTGTTCCTCCCACTACATTCTCGAATGGGAGTGTGATCAGGAAT TCTGCTGTTCCTTCATCCCTGCCAGTATTCCAACGGTTTCATCCTGTTGATAATTCTCAGGACTTGAGGCCAGTACCACC GGCAGTACGACCGGCTGATGCCATGATTCCTCAAAGCCAGCCCCTTCGGATTCGTGATTTACAAAGAAATATAGAGTCAT TCAGGCGGAGTGGTGGTTCTAGCTCAACAAACAACCATTCACCGAACCCTGTTATATCTGCAAACAGGGATCCTCGGCCG AATGAGGAAGGGAGCTCAAGAAATATGCCTCGGAACATTTTAGAACACCCAGTCTTCGTACCTCCTACCAATATAAGAAA TGTGGTTCGAAATCCAACTAGAGCTCCAAGTAGTGCAAATGTAAGCATTCCTGGAAATGTTGCTCCTTCAAGCATTCCTG GAAATGTTGCTCCTTCAAGCATTCCTGGAAATGTTGCTTCTTCAAGTATTCCTGGAAACATTGCTCCTGCAAGCATTCCT GGAAACATTGCTCCTGCAAGTGTTCCTGGAAATGTTGCTCCTTCAAGTATTCCTGGAAACGTTGCTCCTTCATTGCGGAC TGGTTTAAATTCAACTATTAATTCATCAGCTGCCTCGGCTTGGGTTTCTCGTCCCAATCCTCAGCAGTATCCTCGTAGGT TATCTGAATATGTTCGTCGGTCCTTATTTTCCCCTGGTTCTGAAGCTGCTGGAAGTCCAAGCAATAACTATTCTTCTTTG CATGGTCCTCCTACTTCATCTGAATCAAGGGGACCGTCATCTGGGGTTAACCCAGGAGCAGCTTCATGGTTGGAGAGGTC AGCTGATAGTGAGTTTGGAATTCCCCAATCCTTACGATCTTTGGCTGTTGCCGGTGAAGGAGGCAATAGACTTGTATCTG AGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTGCGACTTGAGGATGTTATGATCCTCGACCAGTCAATG TTTGCTGGAATTGCTAATATTCATGACCGACACAGGGATATGCGACTTGATGTCGATAACATGTCTTATGAGGAATTATT GGCTCTGGAAGAACGCATTGGAAATGTGAATACTGGATTGACTGAGGAGACCATAATGAAACTTCTGAAACAGAAGAAAT ATTCGGCTGAACCAGGATCTCAGGGTGATGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTACAATGATGGAGATGATATC GGATCGCTCAATTGCGGGCATTTTTACCATACTGGGTGTATTAAACAGTGGCTAATGCATAAGAACCTGTGTCCCATTTG TAAGACAACAGGGTTGGCAAAATGA
Protein sequence (LotjaGi5g1v0027100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGQRGTLGSLAETLEFEFEYGPTQGTAAADQHSFWNNILSPTDMNPSYINSVNHEWQNLSGWSLGEPSSSNTLNEVNTN EQKRELGLSSSMNAGAIGGPRLEQRRLEPTNAFSLDNVNSSPMYISNSNSHLVSQNLNLNAGLPDSGSGNSYHVEHPNLH KSSVPNVPVNEHIPPAIGSGSFLQPSGSNNMFVEDTDGRPGYSLDTRRVSCKRKAIERSVGQSSDGGSSGYTQHTDGSAW NILPTQDYAGSIFNRSAPAEQANARLGLSMGGGASESIPESNVAGSSESFHRNFRLRVNPSSQQIPVPPTTFSNGSVIRN SAVPSSLPVFQRFHPVDNSQDLRPVPPAVRPADAMIPQSQPLRIRDLQRNIESFRRSGGSSSTNNHSPNPVISANRDPRP NEEGSSRNMPRNILEHPVFVPPTNIRNVVRNPTRAPSSANVSIPGNVAPSSIPGNVAPSSIPGNVASSSIPGNIAPASIP GNIAPASVPGNVAPSSIPGNVAPSLRTGLNSTINSSAASAWVSRPNPQQYPRRLSEYVRRSLFSPGSEAAGSPSNNYSSL HGPPTSSESRGPSSGVNPGAASWLERSADSEFGIPQSLRSLAVAGEGGNRLVSELRNVLGLMRRGGNLRLEDVMILDQSM FAGIANIHDRHRDMRLDVDNMSYEELLALEERIGNVNTGLTEETIMKLLKQKKYSAEPGSQGDAEPCCVCQEEYNDGDDI GSLNCGHFYHTGCIKQWLMHKNLCPICKTTGLAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 451 | 451 | 1.8E-144 | – | |
| PANTHER | 1 | 451 | 451 | 1.8E-144 | – | |
| MobiDBLite | 215 | 239 | 25 | - | – | |
| MobiDBLite | 221 | 239 | 19 | - | – | |
| MobiDBLite | 374 | 394 | 21 | - | – | |
| MobiDBLite | 374 | 414 | 41 | - | – | |
| MobiDBLite | 428 | 447 | 20 | - | – | |
| PANTHER | 486 | 614 | 129 | 1.8E-144 | – | |
| PANTHER | 486 | 614 | 129 | 1.8E-144 | – | |
| MobiDBLite | 544 | 581 | 38 | - | – | |
| MobiDBLite | 547 | 576 | 30 | - | – | |
| Gene3D | 670 | 751 | 82 | 6.5E-19 | ||
| SUPERFAMILY | 706 | 750 | 45 | 2.67E-17 | – | |
| CDD | 706 | 748 | 43 | 6.93705E-18 | – | |
| SMART | 707 | 747 | 41 | 3.6E-6 | ||
| Pfam | 707 | 748 | 42 | 1.6E-10 | ||
| ProSiteProfiles | 707 | 748 | 42 | 11.929 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0027100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…