Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0027100 |
| Transcript ID | LotjaGi5g1v0027100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G34040.1 RING/U-box superfamily protein; Swiss-Prot: sp|O49500|MBR2_ARATH E3 ubiquitin-protein ligase MBR2; TrEMBL-Plants: tr|A0A151S022|A0A151S022_CAJCA RING finger protein 165 family; Found in the gene: LotjaGi5g1v0027100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4540565..4541270) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCCTCGACCAGTCAATGTTTGCTGGAATTGCTAATATTCATGACCGACACAGGGATATGCGACTTGATGTCGATAA CATGTCTTATGAGGTAAAGACATATTTCCACATTTGCATGTATGTTTTAATATGTATACTCTTAGTGTCTTTTCCTTCCT TGCTTAATGTGTTTGGATACCAGTTGAGTGCAACGTGAACAGACTTTCATCCTAATCCATAATAGTTCTATTCACTTTTT CCCTTAAAATGTGTGCTAACATCTGTTTATACCACTGTCAACGGATATCCAAATATAAGCTTACATGTTGATGCTTAATT TTATGAGAGTTTCTTGTTATGTAACAGGAATTATTGGCTCTGGAAGAACGCATTGGAAATGTGAATACTGGATTGACTGA GGAGACCATAATGAAACTTCTGAAACAGAAGAAATATTCGGCTGAACCAGGATCTCAGGGTGATGCAGAACCCTGCTGTG TTTGTCAGGTAAACATGACTGGTTGTGATTTCTTTGTCCTTTTTCAATGCATGTGTGCACATGGCTCATATCTCTTGAAT GATGTTTTGTGCAGGAGGAGTACAATGATGGAGATGATATCGGATCGCTCAATTGCGGGCATTTTTACCATACTGGGTGT ATTAAACAGTGGCTAATGCATAAGAACCTGTGTCCCATTTGTAAGACAACAGGGTTGGCAAAATGA
CDS sequence (LotjaGi5g1v0027100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCTCGACCAGTCAATGTTTGCTGGAATTGCTAATATTCATGACCGACACAGGGATATGCGACTTGATGTCGATAA CATGTCTTATGAGGAATTATTGGCTCTGGAAGAACGCATTGGAAATGTGAATACTGGATTGACTGAGGAGACCATAATGA AACTTCTGAAACAGAAGAAATATTCGGCTGAACCAGGATCTCAGGGTGATGCAGAACCCTGCTGTGTTTGTCAGGAGGAG TACAATGATGGAGATGATATCGGATCGCTCAATTGCGGGCATTTTTACCATACTGGGTGTATTAAACAGTGGCTAATGCA TAAGAACCTGTGTCCCATTTGTAAGACAACAGGGTTGGCAAAATGA
Protein sequence (LotjaGi5g1v0027100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILDQSMFAGIANIHDRHRDMRLDVDNMSYEELLALEERIGNVNTGLTEETIMKLLKQKKYSAEPGSQGDAEPCCVCQEE YNDGDDIGSLNCGHFYHTGCIKQWLMHKNLCPICKTTGLAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 120 | 120 | 4.3E-81 | – | |
| PANTHER | 1 | 120 | 120 | 4.3E-81 | – | |
| Gene3D | 36 | 118 | 83 | 1.5E-20 | ||
| SUPERFAMILY | 73 | 117 | 45 | 7.95E-19 | – | |
| Pfam | 74 | 115 | 42 | 9.6E-12 | ||
| ProSiteProfiles | 74 | 115 | 42 | 11.929 | ||
| SMART | 74 | 114 | 41 | 3.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0027100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…