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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0027300 |
| Transcript ID | LotjaGi5g1v0027300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-ribonuclease binding protein; TAIR: AT1G45976.1 S-ribonuclease binding protein 1; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A0L9V232|A0A0L9V232_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0027300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4554834..4556771) extracted from Lotus japonicus Gifu genome v1.2.
CTTCATCTTTGGCTACCCTTTGTTCAATTTGTTTGTTTCTGCAATCTGCACCTTTTAATTTTAGCTACAGCTGTTTAATC TCCTGAAAATTTGAGGAAATTGCCCCAGCTAGGTTTTTTAGTCACACCCCTTTTGGTCATTTTGAATCCAAGTTATTATA TGATGATTAAACCACTGGAAAGTTCAAATTTTTATGTATTTTCTGTGTTCTGGCTCAACAATTTTGTGGGGTTGACATGG TTATGATTTTAAGCTAAGTCCTGGGTTTTTTTGTGTGTTGTGATTTTTGTCTTTGTTTAGTTCATGTTGTTGGGTTTGCT CCGGGTCCTGTGCTTCCTGCTGATGGCAGTGATGGTGGCCTTGACTTGCAATGGAATTATGGTTTGGAACCAGAGAGGAA GAGAATAAAAGAACAGGATTTTTTGGAGAACAATTCTCAGATAACTTCGGTTGATTTCCTGCAACCTCGATCTGTTTCAA CTGGGTTGGGATTGTCACTTGATAATACCCGCCTGGCTTCCACTGGGGACTCGGCTTTGTTGTCACTTATCGGTGATGAC CTCGATCGCGAGTTACAGCAGCAGGATCTGGAGATGGATAGATTTCTCAAAGTGCAGGTTAGCTCAAGTTTTGATTTCTT GCCAGTTCAACTCTATTTGTTGTCAGTTTAACTATGTTTGTTGTCCTGAAAGATAAAGTCTTCCATGAATAGATCACATT ATTTATACACATTTGAATGTATCTTTTATTGTTGGTCGATAAGGGATCTGTTAAGTGTTTCTTGCATGTTCTAAAAAAAA GTAAAGAAAATTGTTACATCGGCAACTTGTTGCGTAATATAAATGCTTTTTGTATTTCTGTTAAGCAATGATTTTGATAT TTTCTGTACGTGATGCCACTTGTCTGAAGATAAATAGAGTGAAAATTTCATATAACCTTTTTTGTGGTTATTTTCGTCCA TTTTGAAATGTCGGGTACTTGTGAAATATTTTCTTAAACCTGGCGCACTTAAGTTGGGTGTGCTGGACTAATCCTGCAAT TAATTAAGACATAATTTTAGTAACTAGTAAGTAGTAACTGATTAGTTATTCACTACCAGAAATAATGATTTGATTTGCTT AGTGCACCCAACCTAGATGCTTATGCAATTCTTCCCATCTTATTGATACTGTATGCACCCAACTTGTGTGCTTCTGATCA AACTTGATCATCATATTTGTCTGCAACAGCATTGTCTATAAACTGCTTTTCTTTTAGTAATTGCTTCACGTGCCTTCAAA GTTCAAATGCCTAACTGTGATGCATTAGAAATTGTATTGGTTATAGCCTGATTTAACATCTGTGTAGATGGGAAAACAAC TTTCTCTGATGTGAACTTGCAGCACTTACTAGTCTTCTCCTTTCTAATAGGGTGAACGATTGCGACAATCAGTACTCGAG AAGGTTCAGGCATCTCAACTTCAGAGTCTTTCAATCATTGAAGACAAAGTCCTGCAGAAACTCCGTGACAAAGAAGCTGA GGTAGAAAACATCAATAAGAGGAATATGGAACTTGAAGATCGAATGGAGCAGCTAGCTGTTGAAGCAGGTGCCTGGCAGC AGCGAGCCAGGTACAACGAGAACATGATTGCTGCTCTCAAATATAACCTTCAACAAGCATATGTCCAAAGCAGAGATAGT AAAGAAGGATGCGGCGACAGTGAGGTAGATGATACGGCTTCCTGCTGCAATGGCCGCACCCTCGATTTTCATCTGCTCTC CAAGGGAAATTCCGACATGAAAGAGATGATGACATGTAAGGCTTGCAGGGTCAATGAAGTGACCATGGTTCTATTACCTT GTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGCTTTTGTCCTCTATGCCAATCCTCTAAATTTATCGGC ATGGAGGTCTTCATGTAA
CDS sequence (LotjaGi5g1v0027300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGATTTCTCAAAGTGCAGGGTGAACGATTGCGACAATCAGTACTCGAGAAGGTTCAGGCATCTCAACTTCAGAG TCTTTCAATCATTGAAGACAAAGTCCTGCAGAAACTCCGTGACAAAGAAGCTGAGGTAGAAAACATCAATAAGAGGAATA TGGAACTTGAAGATCGAATGGAGCAGCTAGCTGTTGAAGCAGGTGCCTGGCAGCAGCGAGCCAGGTACAACGAGAACATG ATTGCTGCTCTCAAATATAACCTTCAACAAGCATATGTCCAAAGCAGAGATAGTAAAGAAGGATGCGGCGACAGTGAGGT AGATGATACGGCTTCCTGCTGCAATGGCCGCACCCTCGATTTTCATCTGCTCTCCAAGGGAAATTCCGACATGAAAGAGA TGATGACATGTAAGGCTTGCAGGGTCAATGAAGTGACCATGGTTCTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGAT TGTGAAAGTAAGCTTAGCTTTTGTCCTCTATGCCAATCCTCTAAATTTATCGGCATGGAGGTCTTCATGTAA
Protein sequence (LotjaGi5g1v0027300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRFLKVQGERLRQSVLEKVQASQLQSLSIIEDKVLQKLRDKEAEVENINKRNMELEDRMEQLAVEAGAWQQRARYNENM IAALKYNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRTLDFHLLSKGNSDMKEMMTCKACRVNEVTMVLLPCKHLCLCKD CESKLSFCPLCQSSKFIGMEVFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 4.8E-106 | – | |
| PIRSF | 1 | 183 | 183 | 6.9E-74 | – | |
| PANTHER | 1 | 183 | 183 | 4.8E-106 | ||
| Gene3D | 13 | 145 | 133 | 6.4E-12 | – | |
| Coils | 32 | 73 | 42 | - | – | |
| Pfam | 135 | 173 | 39 | 1.0E-8 | – | |
| ProSiteProfiles | 137 | 172 | 36 | 9.716 | ||
| Gene3D | 146 | 173 | 28 | 6.4E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0027300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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