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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0029000 |
| Transcript ID | LotjaGi5g1v0029000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SPla/RYanodine receptor (SPRY) domain protein; TAIR: AT4G06536.1 SPla/RYanodine receptor (SPRY) domain-containing protein; Swiss-Prot: sp|Q4WRW0|SSH4_ASPFU Protein ssh4; TrEMBL-Plants: tr|K7M5N2|K7M5N2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0029000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4759636..4763334) extracted from Lotus japonicus Gifu genome v1.2.
TATCGCTCATCCAAACACACTACAATTGATTTGAAAGTTAAGATGGATTCTAAATATAAGATTTGTGATTATTTGTGAGT AGCTTCTACATTTCCGAATTAATTTTAGTTGGTAAAAGCATCTGCCACCTCTTGCATGCTTTGAATTTGATCTAGTCTTA CTCCACACTTTCCATACCCTATTGCCCCCTTATCATCTTCTCCTCCTTCATTCCCTTTCTTCCTTAATACTCCTCCAAAC TCCACCTTTTCTGATCAGAACAATATTAATCTATGCATAAGAATTTGTAAGGAAAAAAGAGAACTAAAAAGAAACTAAAT CTCTTGCAGGAAAAAAAGATGGTTCATTGGATACATGTTGCGGTGGTAGCAGCCACCACGGGGAGTATTGCAACCCTTTT TCTGGTTTTCATGTGGCGCCGGTGTCATCACAAGAGAGATCATCTTGATCAGAGGAGCAGGAAACAAGGCAATTTTTTTG TGTTTCATAATGGAAGAGGAGATTTGTTCAGCTGGGCTGATCATCCCTACCTTGCTGCTGATGCTGTTGAAAATGGATGG TCTAGATTTGCATTCACCAGCTACAATAGCAACATATCATCATCTAGTTCAAAGAGATCAACCATTTTAGGAGCATGTGC AGCTGGTGAAAATGGAAGAGAATCTGAGGCTGAGATAAGCTGGGATGTGTGTCATGGATCAAGTGAATTTATGCAGAAGA TAAGGCTCAATTCTGGGTTGAAGAAAGATGTCCATCCAAATTACAACTCTTCCATGAGTGTTGCTTCTTCTGTCATTAGA GCTGCTCTGCCTCTACCTGGCCCTCCATTGGGAAACTATGCATTCCCACAAGAAGCCTATTTTGAAATCACCATCTTGAA TTCTCAAGGTGATGATCATGATCAAGTGGTTAGGAAGAGAGAAGGGGAGAAGACAAAACTCCTCATTCAAGATGGTTCAA ATGCTAAGAGTAATTTGGGCAATGTTGAGGATATGAAACTTGATGGTACAGAGGGTGGGAAGAGTGGTTCAGTGATGTTC TCATTGGGTTTAACAGCAGGAGGAGCTGTTCCTCTAAGAATCCCAGGCACCTACCCTAGGAGCATTGGATTCAACTCAAA TGGTTCTGTCTTTTTTGATGGTAACTAAATTACCTGCACTTGTCTTATTGCTTGTCATGTTAACTATTAGAATTCAGGTT AGGGTTAACTCTACCGCAAAAACTAACTTATTGGGTGACAATTGCTTTACCCTATATAGACTTATTTGATCACATCTCTT TTCAATTTAGGACTTCTCTATACACACCCTTCACATGCTGAACATCTTAAGCGTGAAACTACTGAACTTCTAAAATTTGA GTTTAAGCCCAACTCAACCCAAAAAAACTAGCTTTAAAGTGATGATTGTTTTACCCTTTATATAAACTTATTTGACCATA TATTTAGTTAATGTGGTACTTCATAATATTCCACTTTAGTTGCATTTGAGGGAATAAAGTTTCATCCACACCTCTCTTTG AGGTGGAGAGAGGTGGAATGAGGAGAGAGATAGGAAGAAAAGAAAAAGTAAGAGAGAGAAAGGATGAGATGTGATAGATG ATAAGATGAGAGAAATAGAAATAAAAAGAGGTGGATATGAAGTGTTTAAAAAATGAGGTGTGTATATATCATTACTCCAT TTGAGGCCTTAAGGCTGTTTATTCATACAAGGTACAATTTGTGGTTAGGTGACACTGATAAGTGCAAAACAAATTCACCG GTCACAAAGTAGCTTTGTGGTCATAAAGGCAACAGCAGCATACACTAACAAAAAGACAGATTTCCAATCCTCATCTAAAA CATCAACACTTTGAGTTTGAAAGGCCCACAAGAAATGTTTCATGGTCAAAAGTATAAATACAATGTCATCAATAAGTCAA ACGCTAACTAAGGGAAATTGTTAAAAAATTTAAAATGGAAGGCTTTTTTGGGGAAAAAACAACTTTTGAAATTACTGATG TATTAAGTTTTGTGGTTTTTTTTATTAGTTTCTAATTCTTGATTCATTGAATAGCCTTAGCATGACTCTAAATAATAGTT GACTAGTTATAGTTACTACCACTTGGTAAAACATGGTAGTGTTATGTTAGTTGTGCTATTAGTTCAATGTATGTTAATGT GGTTTTGATTCATGCAGATTTTCTTTCTGTTCCTTTGAAGACATCATCTAATTGTAAAATTGGTTACAGGAATGAAACTT ATATTGGAATCTGAGAAGGCTCAATGGGCAGGAACCAATACAATAGCTGGCTGTGGATTTGATCCAAGAATGAAGAAGGT TTTCTTCACATTAGGCTCAGAGTTAGTGCATGTGATTCACTGTCAATTAGTGGAATTTGGCACTCCACTTTTCCCAACTT TGGCTGCAAACACAGACATTGAGGTTTTAGTTAATTTTGGACAAAGTGCATTCAAATATGCACCTGCAAATGCAAACAGA ACACCAAATCCATGCTTCATAGCCCCACTTGTGTATTCTTCTGGTGCTACCCTGGGCTATGATGACAGCAAGGAGCTATT CTCCATGGGAAGGATTGATTCTCAGTGGCTTAATCAATCCACACCCAAAGGGAATCACAGTAATTATGTGAATAACAATC GAGCTTCCGAGTTTGATGAGGAATCAGAGGCTGATCTATTTGAAATTGTGTTGGATGGTTCTGAAAAATCTCCAAAATCA TAGCTTGTAGTTGTCAAATACTCAAATGTAGTTGTCTTGTCTTTGGGAATTAACTTTGTTGCTGCTTGTTCAAACATTTG GCACAGGCATCAACTTCATTCGGAAGCATCTCAGCATCAGCAAGAAGGGCTTAAAAGAATCAATGCCTATACATGAATAT TCAAAACACAACACAGAAAGAGATTCTCATGTACATGGAGATTTTTTCATCACTTGCGGAGGCTTTAACACTGGCTACTA ACTAGTTATACAGTTTTGGTATATTAAATGTTTTTTCTCCTTTGATGGCTAAGCATATGGCTTTGCTTCTTAGAAGAGAA CATTCTCACTTCAGTGTAAATATTATCCCAATTCATTTATCTTAAATATTATTGGTTCATATAAGATGTGGTTAAACAAC TCACGAGGTAAGTTAGACACTATGATCGGTGCTACGTGTGAGACTAAAAGATTAGTGTCTAGTAGCTTCATTATTTGCCA AAAATCAGCTTAATAGCAGTGGCGACTAGCCAATGAAATGGAATAACAAAACTACCACAATGCTGAAGGTTCTGATCTAC CAAGCACACAAAAAAAGTGTTGAAGTTGGAATTTCACTGCCATGTATATCCCAGTATTTTACCCATTCGTAGTGATGAGT GGTTTTTTTTCTTTTCCAGATGTTTAATTTCTGATCAAGCAGGCCTGATTGGTAGTGTTTTTTCATAGCGTTGCTTTCAT TAGAGTTTGAATATTTGTAAGTGCCATATGTTTTGGCCCAGCCCTTAGTCTAATCTCTCAACAACAACAAAACTTGTACC TTAATTTTTTTTCAAAGTACCTTAACCTTATTTTTATTTTTTCAAATCCTTAATCTTAATCAAACAAGTGAGAATACCAA CAAGGTAACGCAACTGATAGATAGTTAAATTCCTTAAATATTTAGTACAATGTTTGATCCCTTGGCGGTGCATATGAAGA AACATTTACTGGGAGATGT
CDS sequence (LotjaGi5g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCATTGGATACATGTTGCGGTGGTAGCAGCCACCACGGGGAGTATTGCAACCCTTTTTCTGGTTTTCATGTGGCG CCGGTGTCATCACAAGAGAGATCATCTTGATCAGAGGAGCAGGAAACAAGGCAATTTTTTTGTGTTTCATAATGGAAGAG GAGATTTGTTCAGCTGGGCTGATCATCCCTACCTTGCTGCTGATGCTGTTGAAAATGGATGGTCTAGATTTGCATTCACC AGCTACAATAGCAACATATCATCATCTAGTTCAAAGAGATCAACCATTTTAGGAGCATGTGCAGCTGGTGAAAATGGAAG AGAATCTGAGGCTGAGATAAGCTGGGATGTGTGTCATGGATCAAGTGAATTTATGCAGAAGATAAGGCTCAATTCTGGGT TGAAGAAAGATGTCCATCCAAATTACAACTCTTCCATGAGTGTTGCTTCTTCTGTCATTAGAGCTGCTCTGCCTCTACCT GGCCCTCCATTGGGAAACTATGCATTCCCACAAGAAGCCTATTTTGAAATCACCATCTTGAATTCTCAAGGTGATGATCA TGATCAAGTGGTTAGGAAGAGAGAAGGGGAGAAGACAAAACTCCTCATTCAAGATGGTTCAAATGCTAAGAGTAATTTGG GCAATGTTGAGGATATGAAACTTGATGGTACAGAGGGTGGGAAGAGTGGTTCAGTGATGTTCTCATTGGGTTTAACAGCA GGAGGAGCTGTTCCTCTAAGAATCCCAGGCACCTACCCTAGGAGCATTGGATTCAACTCAAATGGTTCTGTCTTTTTTGA TGGAATGAAACTTATATTGGAATCTGAGAAGGCTCAATGGGCAGGAACCAATACAATAGCTGGCTGTGGATTTGATCCAA GAATGAAGAAGGTTTTCTTCACATTAGGCTCAGAGTTAGTGCATGTGATTCACTGTCAATTAGTGGAATTTGGCACTCCA CTTTTCCCAACTTTGGCTGCAAACACAGACATTGAGGTTTTAGTTAATTTTGGACAAAGTGCATTCAAATATGCACCTGC AAATGCAAACAGAACACCAAATCCATGCTTCATAGCCCCACTTGTGTATTCTTCTGGTGCTACCCTGGGCTATGATGACA GCAAGGAGCTATTCTCCATGGGAAGGATTGATTCTCAGTGGCTTAATCAATCCACACCCAAAGGGAATCACAGTAATTAT GTGAATAACAATCGAGCTTCCGAGTTTGATGAGGAATCAGAGGCTGATCTATTTGAAATTGTGTTGGATGGTTCTGAAAA ATCTCCAAAATCATAG
Protein sequence (LotjaGi5g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHWIHVAVVAATTGSIATLFLVFMWRRCHHKRDHLDQRSRKQGNFFVFHNGRGDLFSWADHPYLAADAVENGWSRFAFT SYNSNISSSSSKRSTILGACAAGENGRESEAEISWDVCHGSSEFMQKIRLNSGLKKDVHPNYNSSMSVASSVIRAALPLP GPPLGNYAFPQEAYFEITILNSQGDDHDQVVRKREGEKTKLLIQDGSNAKSNLGNVEDMKLDGTEGGKSGSVMFSLGLTA GGAVPLRIPGTYPRSIGFNSNGSVFFDGMKLILESEKAQWAGTNTIAGCGFDPRMKKVFFTLGSELVHVIHCQLVEFGTP LFPTLAANTDIEVLVNFGQSAFKYAPANANRTPNPCFIAPLVYSSGATLGYDDSKELFSMGRIDSQWLNQSTPKGNHSNY VNNNRASEFDEESEADLFEIVLDGSEKSPKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 431 | 405 | - | – | |
| PANTHER | 35 | 418 | 384 | 1.1E-131 | – | |
| PANTHER | 35 | 418 | 384 | 1.1E-131 | – | |
| SMART | 170 | 341 | 172 | 0.0068 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0029000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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