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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003877
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.400s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0178359.1
n.a. Protein ssh4 [Medicago truncatula] gi|357465591|ref|XP_003603080.1| chr0 86503271 86506141 +
2 domain predictions
1 GO term
Lj1g3v1217910.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max] gi|356516283|ref|XP_003526825.1| chr1 14778076 14790686 +
3 domain predictions
1 GO term
Lj3g3v3600530.1
n.a. PREDICTED: set1/Ash2 histone methyltransferase complex subunit ASH2-like [Glycine max] gi|356543622|ref|XP_003540259.1| chr3 43589326 43593259 -
3 domain predictions
1 GO term
Lj3g3v3600530.2
n.a. PREDICTED: set1/Ash2 histone methyltransferase complex subunit ASH2-like [Glycine max] gi|356543622|ref|XP_003540259.1| chr3 43589326 43593259 -
3 domain predictions
1 GO term
Lj3g3v3755440.1
n.a. PREDICTED: ran-binding protein 10-like [Glycine max] gi|356541828|ref|XP_003539374.1| chr3 45542881 45552227 -
3 domain predictions
1 GO term
Lj3g3v3755440.2
n.a. PREDICTED: ran-binding protein 10-like [Glycine max] gi|356541828|ref|XP_003539374.1| chr3 45551201 45552227 -
3 domain predictions
1 GO term
Lj5g3v0290690.1
n.a. Protein ssh4 [Medicago truncatula] gi|357437749|ref|XP_003589150.1| chr5 2546951 2549829 -
2 domain predictions
1 GO term
LotjaGi1g1v0311400.2
n.a. E3 ubiquitin-protein ligase RKP; TAIR: AT2G22010.1 related to KPC1; Swiss-Prot: sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP; TrEMBL-Plants: tr|I1KBB2|I1KBB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0311400 LjG1.1_chr1 75552725 75565300 +
3 domain predictions
1 GO term
LotjaGi1g1v0311400.3
n.a. E3 ubiquitin-protein ligase RKP; TAIR: AT2G22010.1 related to KPC1; Swiss-Prot: sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP; TrEMBL-Plants: tr|I1KBB2|I1KBB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0311400 LjG1.1_chr1 75553772 75564301 +
3 domain predictions
1 GO term
LotjaGi1g1v0357200.1
n.a. SPla/RYanodine receptor (SPRY) domain protein; TAIR: AT4G06536.1 SPla/RYanodine receptor (SPRY) domain-containing protein; Swiss-Prot: sp|Q4WRW0|SSH4_ASPFU Protein ssh4; TrEMBL-Plants: tr|V7AT08|V7AT08_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0357200 LjG1.1_chr1 83068897 83071906 +
2 domain predictions
1 GO term
LotjaGi3g1v0536500.1
n.a. Set1/Ash2 histone methyltransferase complex subunit ASH2; TAIR: AT1G51450.1 TRAUCO; Swiss-Prot: sp|Q9C8J7|TRO_ARATH Protein TRAUCO; TrEMBL-Plants: tr|I1LPA8|I1LPA8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0536500 LjG1.1_chr3 95303094 95310268 -
3 domain predictions
1 GO term
LotjaGi3g1v0536500.2
n.a. Set1/Ash2 histone methyltransferase complex subunit ASH2; TAIR: AT1G51450.1 TRAUCO; Swiss-Prot: sp|Q9C8J7|TRO_ARATH Protein TRAUCO; TrEMBL-Plants: tr|V7ADB2|V7ADB2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0536500 LjG1.1_chr3 95306197 95310089 -
3 domain predictions
1 GO term
LotjaGi3g1v0556900.1
n.a. Ran-binding protein 10; TAIR: AT1G35470.2 SPla/RYanodine receptor (SPRY) domain-containing protein; Swiss-Prot: sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10; TrEMBL-Plants: tr|I1LNN2|I1LNN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556900 LjG1.1_chr3 97478257 97488320 -
3 domain predictions
1 GO term
LotjaGi5g1v0029000.1
n.a. SPla/RYanodine receptor (SPRY) domain protein; TAIR: AT4G06536.1 SPla/RYanodine receptor (SPRY) domain-containing protein; Swiss-Prot: sp|Q4WRW0|SSH4_ASPFU Protein ssh4; TrEMBL-Plants: tr|K7M5N2|K7M5N2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0029000 LjG1.1_chr5 4759636 4763334 -
2 domain predictions
1 GO term
LotjaGi6g1v0339000.1
n.a. Heterogeneous nuclear ribonucleoprotein U-like protein 1; TAIR: AT2G22010.1 related to KPC1; Swiss-Prot: sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1; TrEMBL-Plants: tr|I1MEA2|I1MEA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339000 LjG1.1_chr6 65316996 65320497 +
2 domain predictions
1 GO term