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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0029100 |
| Transcript ID | LotjaGi5g1v0029100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 8-amino-7-oxononanoate synthase; TAIR: AT4G36480.1 long-chain base1; Swiss-Prot: sp|Q94IB8|LCB1_ARATH Long chain base biosynthesis protein 1; TrEMBL-Plants: tr|G7K743|G7K743_MEDTR Long chain base biosynthesis protein 1a; Found in the gene: LotjaGi5g1v0029100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4779283..4785641) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGCAACTGTTGTGGATTTTGTCAACACTGCGTTAGGTTGGCTCAGATTTGCTGTTGATGCTCCGTCTGCGCGAGC TGTAGTTTTCGGAGTCAATATCGGTGGTATATACATAGTCTTTTCATAATTCATATCATGGTTTGATGCTTAGAAATGTG ATTAATTATGAATTATGTGTTGATTGATTAGTTAATTGATTGATTTTATCTGTTTTTAACTTCTGTTTGAAGGACATTTG TTTCTCGAAGTTTTTCTCCTGGTGGTCATACTATTCTTGCTCTCCCAGAAAAGTTACAAGCCTCCTAAAAGGCCCTTAAC AAACAAGGTGTGTTCAACACTTTCATTACTATGTATTTGCATTCAGTTTCTTAGTTATTTATTGATTGTGTGGTAGCATA GCAATGTAGAGCTGATATATAGCTTGAGCAAACTTTTATATAAAATAGAGTTGAAATTCGTTTGATTATCTTTGTTTGCT TATTTGATCAAATGCAAGTAGGCTTCTCCTCTAATTTGTTTATGAAGTTAGTATGAGTGTATAGTGCACTTGAAAAGTGG TTTCTATTAATGTTGGGTTTTAGAATTTCTTCAAACACTTGAATGTAAGTAGAGAAACAGATACTTAGTTATTGGGGTTT TTAGTAGTTCTAGGGACTTAACATGGGGCATCTCTTGTTATTCTTTAGGAGGTTTTAGAGCTTTCAAGGTCGATTGATCT TTAGGTTTCATATAGATGGAAAATATTTTCTTCAGATGTGGACTTTTAGCTAAGCTTGTTTTTACTGATCGTATGCTCTT TTCTGGTGCTTACTTGGAACTTGGAACTACTCTGACATTGATGTTCTGTTTTCTTTTGCCTGAACGTTTGGAGGTCAATT CATCAAAGATTTAAGTTTGTTAAGTTTGGGACTCACTATCCCTCCACTGTTGGTGGTATAATAGCAGCTCTCTTTGTGAT GTAGTTTGACTTGCTTTCTGAAGGATTGTTTCCTTAGTTTGTAAGTTTTAGAAGATATATTTGAATGGATTAAGACATAA TTGTGTATGGAAAAATCTACCCATCTTCTAAAATTCTTTCACAGGAGGTTTTCAATTGGTATCATGTCGGTAGCTTTGCA GGCCATATTGTTGTTCTGTACATTTCTGGAATACAGTTGAATTTTTTCTGAAGACCTTCTTCACGTGACGTGGAAATTGA AGATTGTTTATTTCACACTTTTTATAGTAACTAACTTGTGTGCCTGACTTGTACCTTGTTATCTCTCTCTGTCTTGTTCT CGACTTGTAAACTTTTGTTCTTTGTAATGAGGTCTTCTCCAATGGCATATCTTATGTACCTCTTGTGCTTCAAAATATGC TACTACTGTAATGGAAGATGTGGCAATATTATGATTGATATTAGAGGATAGTGATATTATTGTTGTAATGTTGTTTGCTT AGCAGTTTATTCTTCCTTTCTGTTATCAGCTATGCTTAAAAATATTGAGTTCTGTTAAAACGTATAATTATATTAATCAG TCTTTTTCTGGATTTAATTTTTTATTACCAGATTTTTTTATGGTAGAGTTTCTTTCTTTTTTCAGTTACTGTATGGAATT TTTAACTATACTGTTAGTTTTTACATGTTAGTGTTGCTAATATCCAATTTGACATTCATCATGTTGTAGTATTCTGACAT TTCATAAATTGGTGCTTACTAAATGTTTGCAGGAAATTGACGAGCTATGTGATGAATGGGCTCCAGAATCCCTTATTCCT TCTCTTAATGAAGAGATGTTGTATGAACCACCAGTGCTGGAGAGGTGATTGCGCTTTCTCTGGTGGTAGCACTACCATTT AGTTTTCATACTCTTATTGTCTCAAGCATGTTAAATTTCATGTTTGTTGTATGTTTCGCTGACGGAGTGCCTTCCCTGAA ATTACCATATGTTTTGTCCTTGTCAACTTCACCTTTATGGTTACATTTCCTTTACTTAGATTCGTGGGATTATTGAGGGT GAGCCGTGGCACATTGGTGAGTTTGTCACCTTGTGACCTAGTGGTCATGGATCAGCTGAAACAACCACTCCAAGACAGGG TTAAAGTTGCGACATCAAAGGACCCCACTATAATGGGATTCTCTTGCACTAGACAACCCTTTAGATTCTTAAATTATTGC TTTCCATTTTGAATGAAATTTGTTAATAAAAAGTTCTCCCCTGTGATTTCATAAGATTTCAGATGCTTCTTGTTTTCAAA GTCACACACGTTCTGCTAGTTGTTAAATTTTAGCAGAATATATTGGGGAGCTGGAGGTTTTATTCAAGTTCAAAATAAGG AAGGTTCATTTTTAGATTTTGAAAATAAAGGGAGGCCTCGTAATTCACAATTTTAAAGTTTATTCTGTTGAAGTATATGA TCTTGAGTGTCGACAACTGACAAGTATCTAATAATGGGCTCAATTTGTTATGTAGTTTAGAGTTTAGACATTACGATTTC ACTCTGGGCATTTAAATGACATGAGCTCATTATATATTCAAGTCAAACAGTATGTTAAATTCGGGCAATTGTCTTTTTGT ATCCTCCTGATAATGAGATGTTTTTAATGCAGTGCTGCTGGGCCACATACCATAGTTAATGGGAAAGACGTTGTCAATTT TTCTTCAGCAAACTATCTTGGGCTTGTAGGTCATCAAAAGTTACTTGTAAGGAAATGGTCCCACATCAATAATAAATTCC TCCTTTTGGGCAATGACAAGCCAGTGAATGAATCTATATGTACTTTATATTGTAGGACTCATGTACTTCTGCTTTAGAGA AATACGGTGTTGGTTCTTGTGGTCCCCGTGGGTTTTATGGAACAATTGGTAAGACTTAATCTTGAAGTTTTGTTTTTGAG GAAATATTTGCTCTCTTATGATATTTTTGCTCTGCCCAGATGTCCATCTTGACTGTGAAGCGAGAATAGCTAAGTTTTTA GGAACCCCTGATTCAATTCTCTACTCCTATGGACTTTCGACCATGTTCAGTGCAATTCCTGCTTTCTCTAAGAAAGGAGA TATAATTGTAGCGTAAGTATGCATACTTGTCGTTGGATATCTGCTGTGCAGTCTTGTTCAGTTGTTCAGTTTTTCCCAAT TTTTTGTCTGACGACATTTATAGTGGGCAAAGATAAAACCAGACACGACATAGAGAATTATTTGGATGGTTTTATGTCAT TGCTTTTACTTTATAAGAATGGTATAAGGAATGATCCGATTTACTTCTCCATCCACATTATATTTCCATATATTGCAAAG AAATGTCCTTTGGCACCTCCTGATCATTGGAGACTATGTTTACATAACTCTGATGTTATAAGTTTCATAGGTAAGTTTTT ATATTTTACAGGGATGAGGGAGTCCACTGGGGAATACAGAATGGCCTTCATCTTTCTAGAAGCACAGTGGTGTATTTTAA GCACAATGACATGGATTCTTTAAGAGAAACATTAGAGAAAATTACTATCAAATATAAGCGGGTCAAGAACTTGAGGCGTT ATATTGTTGTTGAAGCCATCTACCAGGTAGATATTGTCTATTGCATGTGGTAGATCAGCTTTACACTTCTATCTTGTATT TCCTAAGAAGTTCTTACCACCTTCAATTATAAAATAAAACAGCTGTATGAATTGCTGGCAACTTGCGATATGGGTTAATT GTGCTATATGAAATACTAGTGCTGCTGAGATAGTAGGGTAATCAACAAATGCAATTTGAAACTATTTATGAAGAACTGAA ATGAACATTTTGTGCCTTAAAGAGTAGCAGTATTACTAAAGTATATGTTAGGATGGGTAGAAGGGGGAATATCCCTAATT CCCACTAGTGATACCTGCCTTGCTGATGTGGCAGTATCTTTCGGGGAATCGAGCTGGGCAAAGAGAATTGAAGGAGAGAG AATGCTGAGGTGGGAATAATCGTGTGAATTGTGAAGGAGAGGGAGAAGCATCCTCTAATTTGCCAGTATGAGTTCTTCTA TTTTCTTTATTTTCCCAAGACTGGACCTAAGGATTTCTGAGTTTCCCTGTATAATTCAATACTATTATAGTAATTCAGTT TATTTTTCTCTCTTATATTCATCCGGCACCTTTCACTATGATAGTCCCACTACAATTTTAGAAGGAGCAGAATAGCACAC GACACTTTTTCATTTAGACAAAACTGCCCCCCCCCCCCTCCCTTTTTTTCTGTTTAAAAATAGTTATGGGTTTCTTGCCA TTTTCCTTAGCCAAACTTTATTTAATTTAAAAACTCAAGTTTTCCTCTCTCCCCATCTGTCACCTTCTTTCCCTTTCTCT GTCTTCTACTTCACCGTTCTGCTCGGCTCTGAGCAGCATTGGTAAGTTTTCGCTCCAGAAATAAGAAAAAGATAAAGCTT GAACACGTCTTCTGTCCCACTAACATGACTCCACATGACCCATCCTCTTCTCATTCTTTTTCTTCCTTCAATGTGTACCT CCAAAGCCATCACCAACCATATCCATTTGGCCAACATTCATAGCCAGTTAGCTACTGTGGAGTTAACCCACTCCGACACC TAAGAGTATTAGGTCTGGACAATGCGTATGTCTACTCTAATACCATGATCATTATTAGATCTCCTAATAATATTAGCTGT TGGCTCATAATTGGTTTACTGCTTTAACAGAGAGATTCTGCAGTTGTTGCAACCAACTATTCTGCAACTTTCTTCTCATC AATTTTCTAATTCTTTTTAACCCAGATTGTTTTATAAGAGCCAAAATGGTGTTGTTGTAAATAATAAAGAACATATGCAT GTTGCTGTTAGATCGTGTATGTCGCAATTTCTTTCCTTAAAAAATTGCTACTTTTGCTGGTATTCTCAACCATTCATGTA AGAGTATGAAAGCTGTTAGCTATTCATGTGCTGCTGGTATTCAGAGTACACTGTTATGATGTATTGTTAGGTCTGTTAGA TAGTTAGTTTGGTGCCGGCTCATAGTCAGTTACACTCAAACTGACTATTTATAACATGCACACCTATTCAGTTCAGTGAA TCGATAATACAGTTAGATTCTGTTAACTCTCTCTCACAATCAGATTCTCTAAATCTAATATGGTATCTAGAGCTTAGGTT CAGGAGTTCATGGCTAGCACCGGCACTCCTCAATCTTCTTCGCGGTCTCTGTCATCATCACCGGAGACACAGCAACTTGT TCAATAGTGTCCATCTCCGTCAGCGACTGGCCTGAAGATGCATGCTTCTTTTTCCCTTGATTAATCTGCACCATTCTCCT TCTCTCATGTGATCTCTGACAAATTAGATGATAAGAACTTCCTAGTGTGGAAGCAATAGGTGTAGCCGGTGATAATTGCT CACTCTTTGCATCTTTTTCTCCTCAATCCAAAGGTTCCTGAGAAGTATGCTGATGAATCTGTTCACGAGTCAGGCGTTGA GTCTTCTGCATACCAAGCATGGGAGCAGCAAGATTCTCTTCTCTGATCTTGGCTCCAACCCACGGCCACCAGTCCCGTTC TTACAAAGCTCACATGCTGCTGTCATGCTCATCAACCTTGAGGCAAAATTCATGCCTATTTCCATTCGCAAACCGGAGCT AAGGCATGTCAGTTATGAACTGAGCTTTGTAACACTGCTCTTTCGAATCACACAGTTAGTGAGTATTTCTTACGTGTTAA GGCAATTTCTGATTCTCTTTGTGCAATTGGAGATCCAGTTTCTGAAAGAGCTGTTAGATATAGTTCTTGAAGGTCTCCCT CAAGAGTATGAATCTCTTGTTAATCTCGTCAGTATGATTACCAAATTTCAGAGTCTGTCTATTGGTGAAATTGAATTTCT ATTGTTGGCACAAGAGGTTCGAATTGGAATTGTACTTTCTTTTATTTTATTTTATGTGGTTGTTATACTATTTCTATCAA TGCTCGAATGACTTGCCTACATGAAATCTAAAATTGCTTGATCAATGCCTGTTAACATCTTTTTCTCTGTAAATTTTTCA GAATTCTGGCCAAATAGCACCCTTGGATGAGATCATTAAATTGAAAGAAAAATATCGTTTTCGTGTATTGATGGACGAGA GCAACTCGTTTGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAATACTATGACGTTCCGGTATGTACTGAAAATTTA TTTACGTGCAGCTACTCTGGATGTAAGTGTGTATATATTAAAATTTGCAATGCTGATTGTGATTTATGGTCACATGCTGC AGGTTGAGAAGTTGGATATTATAACTGCTGCTATGGGACATGCATTGGCCACAGAAGGAGGATTCTGCACTGGAAATGCA AGAGTTATTGATCACCAAGTATGGCAGTGTCATATGTGA
CDS sequence (LotjaGi5g1v0029100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCAACTGTTGTGGATTTTGTCAACACTGCGTTAGGTTGGCTCAGATTTGCTGTTGATGCTCCGTCTGCGCGAGC TGTAGTTTTCGGAGTCAATATCGGTGGACATTTGTTTCTCGAAGTTTTTCTCCTGGTGGTCATACTATTCTTGCTCTCCC AGAAAAGTTACAAGCCTCCTAAAAGGCCCTTAACAAACAAGGAAATTGACGAGCTATGTGATGAATGGGCTCCAGAATCC CTTATTCCTTCTCTTAATGAAGAGATGTTGTATGAACCACCAGTGCTGGAGAGTGCTGCTGGGCCACATACCATAGTTAA TGGGAAAGACGTTGTCAATTTTTCTTCAGCAAACTATCTTGGGCTTGTAGGTCATCAAAAGTTACTTGACTCATGTACTT CTGCTTTAGAGAAATACGGTGTTGGTTCTTGTGGTCCCCGTGGGTTTTATGGAACAATTGATGTCCATCTTGACTGTGAA GCGAGAATAGCTAAGTTTTTAGGAACCCCTGATTCAATTCTCTACTCCTATGGACTTTCGACCATGTTCAGTGCAATTCC TGCTTTCTCTAAGAAAGGAGATATAATTGTAGCGGATGAGGGAGTCCACTGGGGAATACAGAATGGCCTTCATCTTTCTA GAAGCACAGTGGTGTATTTTAAGCACAATGACATGGATTCTTTAAGAGAAACATTAGAGAAAATTACTATCAAATATAAG CGGGTCAAGAACTTGAGGCGTTATATTGTTGTTGAAGCCATCTACCAGAATTCTGGCCAAATAGCACCCTTGGATGAGAT CATTAAATTGAAAGAAAAATATCGTTTTCGTGTATTGATGGACGAGAGCAACTCGTTTGGTGTGCTTGGAAGTTCTGGAA GAGGTCTCACTGAATACTATGACGTTCCGGTTGAGAAGTTGGATATTATAACTGCTGCTATGGGACATGCATTGGCCACA GAAGGAGGATTCTGCACTGGAAATGCAAGAGTTATTGATCACCAAGTATGGCAGTGTCATATGTGA
Protein sequence (LotjaGi5g1v0029100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATVVDFVNTALGWLRFAVDAPSARAVVFGVNIGGHLFLEVFLLVVILFLLSQKSYKPPKRPLTNKEIDELCDEWAPES LIPSLNEEMLYEPPVLESAAGPHTIVNGKDVVNFSSANYLGLVGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLDCE ARIAKFLGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLHLSRSTVVYFKHNDMDSLRETLEKITIKYK RVKNLRRYIVVEAIYQNSGQIAPLDEIIKLKEKYRFRVLMDESNSFGVLGSSGRGLTEYYDVPVEKLDIITAAMGHALAT EGGFCTGNARVIDHQVWQCHM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 7 | 336 | 330 | 4.0E-192 | – | |
| PANTHER | 7 | 336 | 330 | 4.0E-192 | – | |
| Phobius | 27 | 52 | 26 | - | – | |
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 53 | 341 | 289 | - | – | |
| SUPERFAMILY | 84 | 340 | 257 | 5.0E-61 | ||
| Gene3D | 104 | 120 | 17 | 4.1E-71 | ||
| Pfam | 109 | 335 | 227 | 2.6E-32 | ||
| Gene3D | 125 | 335 | 211 | 4.1E-71 | ||
| Coils | 225 | 245 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi5g1v0029100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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