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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0029700 |
| Transcript ID | LotjaGi5g1v0029700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat protein kinase family protein; TAIR: AT4G06744.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q8W3M4|Y4744_ARATH Uncharacterized protein At4g06744; TrEMBL-Plants: tr|V7CRQ8|V7CRQ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0029700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4871379..4873526) extracted from Lotus japonicus Gifu genome v1.2.
TTATGAAGTTCAAGTTTTGTAGATGAAGAAAATTTTGCTAAGAAAGCTAATCCCACTATAATGTAAACATCATCTGCTCG AAAATAATTACCTATCATGGAAGAAAATACATTTGGTGCACACAAGAAAATTGATTTAAACCAGCACATGATTGCCAATT TCTTGCTGCAGAGGCTTCAAAGTGGAGAGGATTAGGATCCAGATAAGCAATAGCAGTGGATATATAACCATGTATATCTT AGTATATAGTATTCCATGCACTTTTTTGGACTGCTATCAGCCCCAATCATTTTGCTTATGCACATACTAAAGAGAGTTTT CAAAAGCTGGCCTATATCTGCACTGCTTTCTGCCCACTTGCCTTTAAAACTAGAGAGTGGAATTGAGGTGCAAACAAAAT GTGTAGTATCACTGTAAAATTGGTCTCAACTTTGCACATCCTCTTGCTGTTTCTTCCTTTCCTCATGTCAGCACATGACA CAAACAAAAACAAAGGTTGCAACAACAACAATAGCCAAGTAGACAAAACAACATCAGTGACAACCCCATGTCCAAAATCA ACAACAGTTCAAGCAACAAAAGCTAAAACAAATGCTTTGGTATTTGCAGATCAAAGACTTGCAGTAGTGTACCCAGTGAT CCAAAAATTCAAGTCCACTATCACTTCAGATCCCTTAGGAGTAACCAAATCATGGGTAGGCTCAGATATATGCAGCTACA GAGGATTTTTCTGTGATAACCCACCAGGAAACAACTCTGCTATTGCTCTGGCTTCAGTTGACTTCAATGGTTTCCAGCTC AGTGCTCCTTCCCTTGATGGGTTTCTCGATAAACTCCCTGATATTGCTCTCTTCCATGCAAATTCCAACAAATTTTCAGG CACAATTTCCCCTCAAATCACCAAGCTCCCTTATCTGTATGAGCTTGATGTTAGCAACAACAAACTTTCTGGTCCATTTC CCAATTCTGTTCTAGGCATGAAAACTTTGACATTCTTGGATATCAGGTTTAATTTTTTCTCTGGGGCAGTCCCACCACAG ATTTTCACACAGGACCTTGAAGTTCTCTTCATCAATGACAACCTTTTCACTCAGAATTTACCTGATAATCTTGACAACAC TCATATTCTCTTGCTCACTTTGGCAAACAACAAGTTCAAGGGTCCAATTCCTAGAAGCCTTCCAAAAGCACTTTCAACTC TCACTGAAGTGCTTTTTCTGAATAACCAGCTCACAGGTTGTTTGCCTTATGAGATTGGGTTCCTTCAAGAGGCCACAGTG TTTGATGCTGGAAATAACCAGTTAACAGGTCCTTTACCATTTTCTTTGAGTTGTCTTGAGAAAGTGGAGCTTCTCAATTT GGCTGGTAATCTTTTGTTTGGGATGGTGCCAGAAGTGGTGTGTGGAGAGTTGGGGAATTTGGTTAACTTTTCACTGTCAG ATAACTATTTTACCAATGTGGGGCCTCTGTGTAGGATCTTGATTCAGAGAGGAGTTCTTGATGTTAGAAACAATTGTGTT CCTGATCTTCCATTTCAGAGATCAGTGGTTGAGTGTGCAGATTTCTTTGCACACCCTAGGATGTGTCCCTTCATGTGGTC TCATAGTTTCATCCCTTGTCAGCTTCCTTTTCATCAAAACTCCCCAGCTACTTCAATTCCTTAGATTATCCTTCTCCTTT AACGTGTTTGGTTCCACAGTGAAATGCTGAAGAATCATTTCCGATCAAAACCTAGAAGTCTTAGCTTCTGAGTAAACGTG TATTGAATTATGTGTAAATCATGAAACCAAACAAGGCATTTGGGTTGCAATTCTTTATCTTCCTTTTGTTTTGTTTCCCC TTCTTCATTGTAATGTATAATTTGTACTGAACTTTGTGATTGTCTAATAATTTCTGCACTTGATGTCAATGTGTGCAAAT GAAAATTTTCTTCAAAGTCATGTAACATAACCATTTTATCATAATTTTATGTTTTCCAATTGGGTTATGCATATAGCATA TTATTTTGACACATGGTGATTTCTTAGCACTGAGCCACTAGAATTGTGGCTACCATATTGAGGATGTTACCTTAACTATC ATATTACAAACAAAATACTTTCACACTCAAATAATTTTGCTAACGTTTATGTTCCAAGGTTGTGAAGA
CDS sequence (LotjaGi5g1v0029700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTAGTATCACTGTAAAATTGGTCTCAACTTTGCACATCCTCTTGCTGTTTCTTCCTTTCCTCATGTCAGCACATGA CACAAACAAAAACAAAGGTTGCAACAACAACAATAGCCAAGTAGACAAAACAACATCAGTGACAACCCCATGTCCAAAAT CAACAACAGTTCAAGCAACAAAAGCTAAAACAAATGCTTTGGTATTTGCAGATCAAAGACTTGCAGTAGTGTACCCAGTG ATCCAAAAATTCAAGTCCACTATCACTTCAGATCCCTTAGGAGTAACCAAATCATGGGTAGGCTCAGATATATGCAGCTA CAGAGGATTTTTCTGTGATAACCCACCAGGAAACAACTCTGCTATTGCTCTGGCTTCAGTTGACTTCAATGGTTTCCAGC TCAGTGCTCCTTCCCTTGATGGGTTTCTCGATAAACTCCCTGATATTGCTCTCTTCCATGCAAATTCCAACAAATTTTCA GGCACAATTTCCCCTCAAATCACCAAGCTCCCTTATCTGTATGAGCTTGATGTTAGCAACAACAAACTTTCTGGTCCATT TCCCAATTCTGTTCTAGGCATGAAAACTTTGACATTCTTGGATATCAGGTTTAATTTTTTCTCTGGGGCAGTCCCACCAC AGATTTTCACACAGGACCTTGAAGTTCTCTTCATCAATGACAACCTTTTCACTCAGAATTTACCTGATAATCTTGACAAC ACTCATATTCTCTTGCTCACTTTGGCAAACAACAAGTTCAAGGGTCCAATTCCTAGAAGCCTTCCAAAAGCACTTTCAAC TCTCACTGAAGTGCTTTTTCTGAATAACCAGCTCACAGGTTGTTTGCCTTATGAGATTGGGTTCCTTCAAGAGGCCACAG TGTTTGATGCTGGAAATAACCAGTTAACAGGTCCTTTACCATTTTCTTTGAGTTGTCTTGAGAAAGTGGAGCTTCTCAAT TTGGCTGGTAATCTTTTGTTTGGGATGGTGCCAGAAGTGGTGTGTGGAGAGTTGGGGAATTTGGTTAACTTTTCACTGTC AGATAACTATTTTACCAATGTGGGGCCTCTGTGTAGGATCTTGATTCAGAGAGGAGTTCTTGATGTTAGAAACAATTGTG TTCCTGATCTTCCATTTCAGAGATCAGTGGTTGAGTGTGCAGATTTCTTTGCACACCCTAGGATGTGTCCCTTCATGTGG TCTCATAGTTTCATCCCTTGTCAGCTTCCTTTTCATCAAAACTCCCCAGCTACTTCAATTCCTTAG
Protein sequence (LotjaGi5g1v0029700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSITVKLVSTLHILLLFLPFLMSAHDTNKNKGCNNNNSQVDKTTSVTTPCPKSTTVQATKAKTNALVFADQRLAVVYPV IQKFKSTITSDPLGVTKSWVGSDICSYRGFFCDNPPGNNSAIALASVDFNGFQLSAPSLDGFLDKLPDIALFHANSNKFS GTISPQITKLPYLYELDVSNNKLSGPFPNSVLGMKTLTFLDIRFNFFSGAVPPQIFTQDLEVLFINDNLFTQNLPDNLDN THILLLTLANNKFKGPIPRSLPKALSTLTEVLFLNNQLTGCLPYEIGFLQEATVFDAGNNQLTGPLPFSLSCLEKVELLN LAGNLLFGMVPEVVCGELGNLVNFSLSDNYFTNVGPLCRILIQRGVLDVRNNCVPDLPFQRSVVECADFFAHPRMCPFMW SHSFIPCQLPFHQNSPATSIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 421 | 397 | - | – | |
| PANTHER | 52 | 415 | 364 | 4.7E-204 | – | |
| PANTHER | 52 | 415 | 364 | 4.7E-204 | – | |
| Gene3D | 79 | 241 | 163 | 2.6E-27 | ||
| Pfam | 82 | 113 | 32 | 2.4E-4 | ||
| SUPERFAMILY | 83 | 373 | 291 | 2.04E-39 | – | |
| Gene3D | 246 | 382 | 137 | 1.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0029700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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