Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0032000.1

Overview

Field Value
Gene ID LotjaGi5g1v0032000
Transcript ID LotjaGi5g1v0032000.1
Lotus japonicus genome version Gifu v1.2
Description Syntaxin protein; TAIR: AT1G27700.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1MXJ2|I1MXJ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0032000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:5303986..5308869) extracted from Lotus japonicus Gifu genome v1.2.

TGTCTATATCTTTGTCATGCGTAACCCTTTCCTTTTTGCTGTAAAATCAAGCCCCTTGAAAATGGTATTCTGTGTCCTTG GCTTAGTATAGCTGAGTTGTGTAAGAGACTCATAAATTTTCAGCCTAGGGACGTTTAAGAAGGTAAATTATTACCCTTTA TCTTTCAGTTTACCGAGGCTCTCTATCCTCCTAATCTCTGTATATTTCAATATGAAACACAATATAAATCTTTCAAAGAA CAATTCTTTTTTATATTTCAATACGTGTTTGTAATAGGTACTTTCGATGCTTCAGTGTCAGAAACTTTAGTGGCCCTCTT TCCAAAGGTGGATGTCCATATGTCCTATCACTTTATGTAATGTCTTGTACAAGGTCATCACCAAAGTGTTGGTACAACGG CTTAGACCTTGCTTACAGGATATTATGGAGCCTTTGCAAAGTAGTTTCATCCCGGGTAGAGGGACGACAAATAATACTAT AATTTTTCAGGAGATTGTCCATTTCAAGAGAATTAAGAAGAAATGTAGTAAGAATGTGCTTTTTAAGTTGGACTTGGAAT AAACCTATGATCGAGTGGATTGGAGCTTTTTGGATACCACTTTGCGTGAGTTTGGTTCCCCCCAGCCTTCTGTTGCGCTC ATTATGCATTGTGTCTCTTTATCTTCCTCTTCCTTGTGTATCATTTAAAATGGGGTGAGGTTGCCTGTTTTCCAGGTGAC TCGTGGCCTCCGTCAAGGAGATTCTCTCTCCTTATCTCTTTGTGCTTTGCATGGAGCGTTTGGCTCATATGATTCAGAAC GAGGTGTCTATTGGGAGATGGAAATCGATGACTATTTCTCAATGAGGGCCAGGAATATTCCACCTGTTTTTTTTTGCTAA TGATGCTCTTCTTTTTGCTAAAGTGGAGGTGGCTCAGGTTAGGGTGGCTTAACATGTCCTTGATAGATCTTTTTGTGGTG CGTCGGGGCTCAAAGTTAATTTCATTAAGTCAAAGGCTTTAGCATCCAGATGTGTTGATGGGATTTGAAGGATAGGTTTG TTGCTATCACTAGTTTATTGGTGACCGGGTGACATCCAGGCATACATCTTGGAAAACTAATATGTTAAATAAGCCGACTC GCGCTACTTTGGCTAAATCCGTCCTATGGGCTATTCCGGTGTATGTCATGCAACTCGGTTGGCTAGCGCAATCTTACTTA TCAATCATGAATCTGGTCAATAATCAAAACCGGACCTTCTCTAAATTGTTTTGTAGTAGGAAGTGTAAGGTGAAGCAGGA TGAGGCAGTGGTTTGTTGACCACCAATATATGAGAAAATCTCGTTGACTGCAAAACAAAATTAGGTCAAACTACTATAAA CAAAATTCTTTGTCCTATTTACATTTTTAGACCCACTTCATTCTCCTCCAACTAACAAATTCAGAATTCTAAACTCTTCT CTCAAATTCAGAATCCATCATTCTTCCTTTCTTTCCTTTTCTGGTTTTCAATTGAAATTCCAATTTCATTGATTGGTTAC TGCAACAGCGAATTCCCCAGTTAGGGTTTATATTTTGGGTTCATCATTGTTCTCAATTTTTTTTTTCTCATTTTCATTAT TATTGTGATCATTATACGAAATTCGAAGCCAACCCATTTTAATTCATGGCGTCGAGTTTCGACCGGTGGGAGAAAGATCC TTTTTTTAACGCTGCTGAAGAAGTTCAGGAATCTGCAGACAGGTACAAATTTCACATATTTATTATCAGCTACGTTCTGT TTTTCTTCCAATTCGCTTTGTGCTTTCATGTAATTTGTAATTCATTTTGATTTTCAGAAGAAATGCACAATTGAAGCTGA AATTTTGTATTTTGTGTTTTTTTTACTCTTTATGAATGTTTAATTTAGATTTACATAATAGAATAAGGAAGCTGGAGATT TTTAAATTAATTTGTGTGCTCAATCTTATAGCCTGCACTGCTAGAAATTTCTTGTTGTTGATATGTTACTATTGTCTTTT TCAAGGATGGATTCTGCATATAGGACTTGGCTACATGCAACAAAAGATACTTCGAGTATGTGGAACTCCGATGAACTCCG CAGAGATCTACAAACTACCCTTGGCACTGCTAAGTGGCAGGTGATTCCTATTCCTGGCTAATTAGCTAAAATAGGTTGTT CATTTGACATATTTTATCATTATGATGAGAATGTGGATGCATCGTGTCTTTGTTGGGAATTGCAGTTAGAGGAATTTGAA CGAGCAGCGAGGTTAAATTATAGCCGGACCTCAGGTGAAGCAAGAACTAGGCACCAAGATTTTATCACTGCCATTGAAGA TAAGATAACAAAAGTTGAGCATTTGTTACACGAATCATCCACTACGGGAAGTAAAGCGTCCATGCCTTGGATACATTTGG ATGAAGGTGAACAAGATGAGCTTGCTTCGTTTCTTTCAGGAATGCCAGCAGCTGAAAGCAATGATCCAACTTGGTCTAAG AGTAGGGACGGTGAAAATCCACAATTAAGTGATAATGATTTAGTCATTAATTGTTCAAAGAATGTTCATATTTCGTCTGG GTTGGGTGAAGCAAAGGAGGAGACACCACGCGGGCATCGTAGGGCAGCGAGTGCTAGTGCAGATATTGGTTTTTGGAAAA TTTCAGTTGCCGATGATGCACAGCAATCAAGTTCCTCCAGTGGTTCTTCTGGTCCAATGCATAAGGTACCCAGTTTATCA GGATTTGTTAGTGCCATGGAATCCAAGATGAAGTGGCCTAGGAATGGTTATAGAAAGCTGAAAGTAGTGGATCATCATAA AGAAACTAAGAGTACGCTACTTCCTACAGCTGAAACAAATAAGGTTTGTTCTTAATCTGCTTTTGTTTTTCTTTCTCATA ATGGGGACTCTTGATTTATTTTTAACACATTTGTTGAATTACTAATCATGTATTTCTTTTCTTTTTCTTCCTTTTATTGG AAAAGGGCAACATGGCATGCTACGGAAGAAGTAAAAGTAGCCTTAAGAGTTGCGATGAATGCTATGACAAGAACCTCTAT GGATGGTATGGGGCTATTCGGAGACAGCTTCAAAGATCTCAATACCAAATGCAATACAGCCAGCCTGTTCGAATAACCGT TTCGATTGTTGTTCTACTTTGTTTGATCGGTATGTCCTTGGTACGAGTGTATATCCATACTACATTCCTTCATACACTAT TTGTTCTTGCATACGGTGGAATTTTGTTTAAACAGCTTCTTACAACTTTGCTATTTGAGGTGCTTTACCTTGTTAGTTGT TAATCCTTTTTTTTATTGTTGAGAAGTCTCACATTGACTAGAGATATGACCAAATAGTCCTTATAATTATAAAGGGTAGA GCAACTCTCACCCCTAAGCTAGCTTTTGGGGTAGAGTTAGGCCTAACCCTAATTTTAATAATTATTTCAATAATTCATGT GGCCATCTTGCAACTGATTTGCTTATGCTTCTTTTTATCACAAAGCTCTTGCTTATCGTTCTGTTCCTTTGCTTTTTTCC AATTTTGTTCCTTTTCTTGGATAAAGTTATTCCTGTGACTATCCCTTCATACTTTTGTGCATGTTTTTCCCCACTTAATT GTTGTTGTGTATTTCATACATAGACAGTAGGCTATTTATTTTTGACTTTATTAGACTTTATGCAAGGGCATTCTTTTGTG AGGGGCCTCAAAAAATCATGTAAGAGTAATCTGGAATGTGAAGTTTGTAACTTTTGTTACTTTTACTCCTTTCCAACAAT ATGCCAAATTGTATAGTTTGTCTTGTTTATACCCGCTGATGTGTTTATAACATCCTTAGTGCATGTTTGGATAAAGTTGT CACAATTGATTTTGATAAAATTGATTATAGTAAAAGTGAGTTGAAAGTGAAGTGATTTATGTTCAGGTACATTACATCTA TGAAATCCAGTTGTAAAATCTCAAAATTGATTATGTTCAACAAATAAGCTTTTGTCTCTAGCTTCTGGCAGAATTTATTT GGGACTGAATTCAATTCTTCAAAATAACTCCCTAAGATGCTTGCAGTATTATTATATTTTTCAAAATATAATATATATTG TGCCTCACACCTGATCGTTATCTGTGCAGTTTTGATTGCATTTCGCACAATGTAGAAGGAAGATTTAGATGCACGATTCG ATAGTTTTTAGGTGGCAGCTGCACCAGGGACAGACAAGCTTTTGAAACAAAGTTCATGCAAATAACCCACGTGGTTCCTT TGGAAAGAAAGATAGGTTAGGTTTTCTGGTTCCCACTTAATGTATTATTATTTAGAGTCTACCATGGCAATGACATTACC TCAATTTTCCATTTTTTGCTATTCATTCTTTGCCCCCTTTTGTTCATGAAGAGCTCTCTGTTGTACCTTATGAAAATGGA GATGACGAATGGGATTGACCTGTTAGATGTTGTAATATATAGGAGACATGTCTTGTTAACTAGTGTTCTTTACCCGTGCG TTGCACGGCGATTACATTTATTTTAAAGATGAATCAGTAGAAATATGTTTTAACTTAGTTTAGACTCTTTTTAGTAAGTA GAACAGATATGAAACCGAACTTATGATACAAACAAGTAGATGAATTAGGCCTGTCCAAACGGACTTGGCCCGAACCGAAA CCGCCCAAACCGAGGCCTTTTTGGCAAAAACGGGCGGTCCGGGTCGGGGTTCGGGTGGACCGAGTGAAAAAAAACGGTTT GCAGTGGTTTAAGTCGGTCGGTCTCGGTTTGGGCTCAAGCCCGACCGAATCGACCGAACCAACTCTTAAAAAAAAAAAGT TACAAGCCCAGCCGGCCAGCCCAATCCCACAACCCAACCCACATTCACTAACCCTACCATATATGTAACACCCCGATTTC GGTG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0032000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCGAGTTTCGACCGGTGGGAGAAAGATCCTTTTTTTAACGCTGCTGAAGAAGTTCAGGAATCTGCAGACAGGAT GGATTCTGCATATAGGACTTGGCTACATGCAACAAAAGATACTTCGAGTATGTGGAACTCCGATGAACTCCGCAGAGATC TACAAACTACCCTTGGCACTGCTAAGTGGCAGTTAGAGGAATTTGAACGAGCAGCGAGGTTAAATTATAGCCGGACCTCA GGTGAAGCAAGAACTAGGCACCAAGATTTTATCACTGCCATTGAAGATAAGATAACAAAAGTTGAGCATTTGTTACACGA ATCATCCACTACGGGAAGTAAAGCGTCCATGCCTTGGATACATTTGGATGAAGGTGAACAAGATGAGCTTGCTTCGTTTC TTTCAGGAATGCCAGCAGCTGAAAGCAATGATCCAACTTGGTCTAAGAGTAGGGACGGTGAAAATCCACAATTAAGTGAT AATGATTTAGTCATTAATTGTTCAAAGAATGTTCATATTTCGTCTGGGTTGGGTGAAGCAAAGGAGGAGACACCACGCGG GCATCGTAGGGCAGCGAGTGCTAGTGCAGATATTGGTTTTTGGAAAATTTCAGTTGCCGATGATGCACAGCAATCAAGTT CCTCCAGTGGTTCTTCTGGTCCAATGCATAAGGTACCCAGTTTATCAGGATTTGTTAGTGCCATGGAATCCAAGATGAAG TGGCCTAGGAATGGTTATAGAAAGCTGAAAGTAGTGGATCATCATAAAGAAACTAAGAGTACGCTACTTCCTACAGCTGA AACAAATAAGGGCAACATGGCATGCTACGGAAGAAGTAAAAGTAGCCTTAAGAGTTGCGATGAATGCTATGACAAGAACC TCTATGGATGGTATGGGGCTATTCGGAGACAGCTTCAAAGATCTCAATACCAAATGCAATACAGCCAGCCTGTTCGAATA ACCGTTTCGATTGTTGTTCTACTTTGTTTGATCGTTTTGATTGCATTTCGCACAATGTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0032000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSFDRWEKDPFFNAAEEVQESADRMDSAYRTWLHATKDTSSMWNSDELRRDLQTTLGTAKWQLEEFERAARLNYSRTS GEARTRHQDFITAIEDKITKVEHLLHESSTTGSKASMPWIHLDEGEQDELASFLSGMPAAESNDPTWSKSRDGENPQLSD NDLVINCSKNVHISSGLGEAKEETPRGHRRAASASADIGFWKISVADDAQQSSSSSGSSGPMHKVPSLSGFVSAMESKMK WPRNGYRKLKVVDHHKETKSTLLPTAETNKGNMACYGRSKSSLKSCDECYDKNLYGWYGAIRRQLQRSQYQMQYSQPVRI TVSIVVLLCLIVLIAFRTM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34949:SF6
1 339 339 2.3E-145 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 317 317 - –
PANTHER
PTHR34949
1 339 339 2.3E-145 –
Gene3D
G3DSA:1.20.58.90
8 109 102 4.7E-7 –
SUPERFAMILY
SSF47661
10 105 96 4.08E-20
IPR010989
Pfam
PF09177
11 101 91 2.3E-18
IPR015260
MobiDBLite
mobidb-lite
137 164 28 - –
MobiDBLite
mobidb-lite
139 164 26 - –
TMHMM
TMhelix
317 336 20 - –
Phobius
TRANSMEMBRANE
318 336 19 - –
Phobius
CYTOPLASMIC_DOMAIN
337 339 3 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of
GO:0048193
Biological process Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0032000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…