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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0035000 |
| Transcript ID | LotjaGi5g1v0035000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT3G61530.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q9M315|PANB2_ARATH 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; TrEMBL-Plants: tr|A0A072TNM1|A0A072TNM1_MEDTR 3-methyl-2-oxobutanoate hydroxymethyltransferase; Found in the gene: LotjaGi5g1v0035000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5774835..5780687) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATCTAGTAATATCTTATAATCTCACCATGAACTTTGTATTGTATTTTGCCAATTTTAATTGGGTATATTGTTCTCA TTCTACTAAAAGATAAGGAGGTATTTTGGCAATTTGTCATGTTAGAGGAGCATTGGTTGTTGCTATGAATTTAGCTCCGA GGCACACCATTCTACTAGAGGGACAAGATTGAAGAGGATGAAGATTCACGAGGTGGTCCCTATTTTATGTAGCTTGAATT TTATGTTTTTTCTCAATAAACACATAGGGGAAATTACATTTAATACCCTCTAGTTCAAATTCACGTTATCGCATATTATG GAACCGTGAACTTTTTTATTTATTTATTAAATTTACTTTGTTATCTAATAATTTTTTTCCCCGTTAAAGATAGCTCAAGT GATAGGAGTTGTGAAACATATTAGTTAGGTAAGATCGATTCCTGACGGATGAAATTTATTTTTCCATGTAAAAATAAAAA TTTGGTATAAACATCCACTAATTTTTTTTTACTGATTGTCTCTCTAATTTTTTTTAACAGCTCTCTCCAATTTCTTGATC CCGTGTCTGTTCACGCGCAATCTTCCTCCGCCTCCTTCTAACTCTAACCTGTGCTTTTCTTCCCTGGGAGCTGAAATCAC AAGGACAAGGTGAAACTTTTGTTTGATTCCACCGGAATAGTCTTCGATCAATGTTGCTGAAGCAAATAAGCTTCCTGTAT TATTTTATTTCTTCTTGAAATTATATGAAATCTGTTTTGTTTTGGGAGAAAAGAAATGCTTTCAAACAATGCGTTCGTTC TTCTTATTCTCAATTCAATCTGATTTGTTTTTATGTGTTGGAATAGGCAAATAGATTCTCCTATTCTTAATTCTAATTTT TTTCATTTCTCCTTGAAACCTATTACCTAACACTAATTTGAGTTACCATTTCTTTCTTTCATTAGGAAATGAAAGAGAAA GAATCAAAGCAACAAGTATCCCACAGGAAAAACTCATAAAGGTGATTTGATTCTTGATTCCTTTGATCATCAATTAACAT TGTTTTTTTAGCTGGTTGATCACATTGTATAGCCTTCGAAATTTGGAAAAGGAGAGATCTAAGAAAACAGACCATTGCAT TTAGGCAAAAATTTATTCAACCATCATAAACTTTGCAAGTGAGCACCATGAATTTTTATTTTGTACTATTTAATCCTTTA ACTGCTAATATTGTTATAATAAGTCAGTCATTTGTTCATTATTATATCATGATTTTCTAGCACTGTCTCTTGAAGAACCA TTCTTCAGGACCCTTTACCTTTAAGCTATTTTTCAAGGCAAAAAGATGCAGCTTCACTACCATATATTGTATTTCATCAG TTCACTTGGTAGTTGAACATGGAACACTCCTGCAGAATTTTCCAAGGAAACTGTCCTAGATATCACAGCTTCCCTTTTTG AGCCTTCCTTTCTTGTTTTAACGGGCTTTATTTTACCACCAAAGCCTGGTAGATAGAGGCAAAGAGCACTGCATTTCAAT CCATCCTCTAGTATTTTCATGTGCATAATGCTCTTACTCTTAGGACTTTCTTTAAGAGCTTCAGTTTTGGAGAATTATCC ATGGTGCACGCAAGTTAACTTGCTCCATTACACTCGGTTTTGACAACCACTGATCAAATTCATCAGCGGCCGCACGCCCG CACATGCTCTTCCTTCACATGGGGTATGCAACTTTGCATTTTCAATTACCCATGACCGATCCAACCTTCTTCTTAAGCTG ATTGCCCAAGCAAGGTTCCTACTTTTTCTAATGGTAATCAGGCATGGCTCTGATAATGATCAAAGGATCTATGATAACAA TAGTAAAAGTTTAAGGATTAATTAAGACAAAATGAAAATTCACGGTGCCCATTTGCAAAAGGGGTGAATTTTATGGTGGT TGAATGCATTTTTCCCTTGTTTTTATAAGCGTAGACCATTGCATATGCTTAATCTGCATCTGCTATCATGGGTTTTACAA ATTCTTCTCAGCTGCTAGCTTCTGCTACTGCCCAGAAAGAGGCTATCTTGATGCCTCTATTGCTGAATATATGGCTTTTA GATGGGTTATGGTATTAGCTCAGGAGTTTTGTTTTACTAAAGTATGGTTTGAAACATATTGTCTGAATTTGGGTAAATGC TTGGCAAAATTCACACTTTTTTGTCCTACCTGGTTGCTGTTGTCAAGGATTGTAATAACTGTTTCTTCCAAATTTGTCAT CTACTCTCTTTTTTATTCAATTTTGTCACTTATTTGCGGTTTATGCTTTCTGTATTTATTAAATATGAGATTAGGAATTC TTCAGTGTTATTTTTCAAGCTTTCCAATTGTTTCTACATCTATTAACATTGATCTCATAGCCTTTTCTGGTTACAAATTG TGTTCCTTTTCCTTCCACAATAATTGTTGCTTTATACTACAGATATTGCAGGAATCTCTCAGTTCTTCCTACTCAAAAGC ATCAGATCAGTACAATAAAATCTACACAACCAAAACTAGAACACAAAATAAAAATGGTGTTCAATGGCTTTGTAATCATA TTTATCTTTGTATAAGTTTATTATCAGGCCTTCGTGGAAGGGAGACAAGTTTTATCCAGTCAAATTTTATAATTAAACAG GGGCAAAATTATCTTTTCTTAGTTTGTTAGTTATGGTGTCTCAGGTTGATTTAGTGACTTATAAATGGAGGGCCGACCCA TCCAACCAAATCAGACTGTTGTCTAGAGAGTAGATAAATGATGGTGTTGAAATGTTTAACTAGGAGGAAAAAACAAATTG AAGGCGTATAGTGCAATGCTCTATGTGATTAGATATTTGTTTATGTTAATGTTAGTCATGAGGTTTGTTGAGCTTAGAAA AAGTTTTTTTTTTTTTTAATATTTGAACACCAATTTTTTTTCATATTGATAATATTTTGAAAACTTAAATACATTAAAAT AAAAAATAAAATGCCCGTGCATTGCACGGTCTACTTACTAGTATACATTATATAAAACAATGATTAAATAATGAAATTTG AGGTGGGCCATTTTTAATTGAAAGGTGTCATGTTATTAGTTTTGGTCTTAGGGGTGGGAAAATGCAACACTTATGAAAAA AGAACACAAAAAAGTGATGATCACAAATAGGAAGTAGTTGAGTTCAAACTCACCACCTCATGAACCTTCATTCTCTTCAA TCTTCTTCCTCTTGCAGAATGGCGTGCATTGTAGCTAAACGCAGAGCAACAACCCAATGCTCCTCTCTTCTGAGGTGCAT TCGGAGCATGAGCAACGTCCCTGAAAACACAGTGTACTCAGGACCCATTTCCCAGAACTCGAACCAGAGAGTGACGCTGG CCCAGTTGAGGCAGAAGCACAAGAAGTCTGAACCCATCTCCATGGTCACTGCCTATGATTACCCTTCCGCAGTGCCTGTG GACATGGCTGGCATCGACATCTGCCTCGTCGGTGATTCCGCAGCCATGGTGGTTCACGGTTACGACACCACCCTCCCCAT AACCATTGATGAAATGCTTGTTCATTGTCGTGCCGTTGCTCGTGGAGCCAAAACACCTCTTCTTGTTGGGGACTTACCTT TTGGAACCTATGAATGCAGCCCCAACCAGGTCATATGCTTTTATTTATTGAAAAAATTTCATCTTTTTCAATCTTGGTGG AATTTGTCACTTTTGGAGTTGAAATGTGTGTTTTGTTCCAAACAGGTCATGTACGTGTTGTTATTGAGAATTGAAATGTG TAAATGAAAAATTAAATTTAAAGGTTTTTGTAATTAAGCGCTTGAGGTGTTTGTTTGTTTGTCTCACTCAATTGTTGAAC TTTCTTACCTTGTGCAATGGTTGTAAGTGTTGTTGTTTTGGTTATGAGCAGGCAGTGGATGCTGCAGTTCGGATTTTGAA AGAAGGGAGAATGGATGCCATAAAATTGGAAGGAGGGTCCCCTTCAAGAATTGTTGCTGCAAAAGCTATTGTTGAGGCTG GAATAGCAGTGATGGGGCATGTTGGGCTTACTCCCCAGGCAATTAGTGTTTTAGGGGGATTTAGACCTCAAGGAAGGAAT GTTGCTAGTGCTGTCAAGGTCTATCTCTCTCTTGCATGATGCATCTATTTGGTATTTGAACAATTTTTTCGTCATCCTAA GAGGAATATGTCTGTGTAGGTTGTGGAGACGGCATTGGCTTTACAAGAAGCAGGGTGCTTCTCGGTTGTTCTAGAATGTG TGCCTGCACCTGTGGCTGCTGCAGCAACAGCAGCCCTTCAAATTCCGACTATCGGAATTGGAGCTGGACCCTTTTGCAGT GGACAGGTCCGTTTGCTTGATTTCCCTTTTAACTAGTATCTATTGGTAAGATATTTTTATTAAGAGATGAGTGGTTTACA TTAGAAGCACTTATTTTGTTTAGGTGAATACACATTACCATTGCTTGATTTGCACTCATTTATTCTTCATCAAGTTGCTT TATTTGGCTTTTAAATCATGATAAATTGTTGCTCTTAAATGATACTTTCACTTTCACATGTGTGTGTATAGATGGATGTA GCTCTAGTTTAATTATTTCTCAGTTATTTTGGGATGATTAGACAAAGTGTTATTTGTGCATTTACAACTTTACCTGGCAC ATGTTCTTTTGAGGAAAAGACAAAAGAAATCTTTTCTGGATTTAGAGGAAGCCAATAATGTCTAATTAGTTTTATTGTTC ATGCAGGTACTAGTTTATCATGATCTGCTTGGTATGCTACAACACCCCCACCATGCAAAGGTGCTTAATGCAAAACAATT ATTAACCTAGTTTTTCTTTCTTTCATTATGGGATTCAAAATAAAGTTGAGATTATCTATATCTTTCGCAGGTTACTCCAA AATTTTGTAAGCAATATGCCCGTGTTGGAGATGTCATCACTAAAGCATTAGTGGAGTATAAGGAAGATGTGATAAATGGT TCATTTCCTGATGCTCAGCATAGCCCATATAAGATTAGCGAAACAGATGCTAATGGTTTCTTGAATGAGTTGCAAAGGTT AGGTTTTGACAAGGCAGCATCTGCGGCTTCTGATGCAGTTCAGAAAATGGTAACAGCCAAGTCAATTGGTGAAAGAACCT CAACAAAGTGATTATTTAGTAAAGCTACATGATAGCCCTTCTTTTCACTTGTTGTCCTTCATTTTCTTTAATGCCAGAAT AATCGAAAGCCACAATTGAACAGAAGTAGAGCACTTGACTTAGATAGATAGATGCCATTTTCTTGGGGCAGATTTCTTTT CTTGTTTTTCCTCTTCTCCTTGTGATAGTCAAGGTGGAATGCATGAATCTAGATATGCCACAGTACAGAAACATGTTTTT GCTATCCAACATCATATATGGAGCCTCCAAAATACCGAAGCCAATATCACTAAAGTAGTCCTACGTTTTGAAGCATTGTA GCTGAGCAAACTGTTGGAAACTGACTGAGTAAACCCTTTCATATGTGGAAGCCCATGTCTACTTCATTCACTCACCACAA TGATGTGGATGGTAACATGCTTGGAATGTGTTGTTTACAGGTTCTTCTTCTTCTTTTTTCCTTCACAAGTTGTGCTTTTT TGGGTTGGAATCTACTAAAGCTCGCAAAACCAAATATGCACTTGTGAAAATTGCTTGTTCAAATTTCAGAAATAATAGTT AGGTTTCGGTTTGGCAACACCTAGTTGATAAGTTAGTTGAAAGCTAGATGATAGGTTGTACGCTATCAGAAGGCTAAAAG ATGAAAAGCTAGCTGATATGATCATGGTTTTCTTAGTTTTAGAGATTTTCTTAATGATTTTATTGAATGAATATCATCAT ATGTGCTCTCTGA
CDS sequence (LotjaGi5g1v0035000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTGCATTGTAGCTAAACGCAGAGCAACAACCCAATGCTCCTCTCTTCTGAGGTGCATTCGGAGCATGAGCAACGT CCCTGAAAACACAGTGTACTCAGGACCCATTTCCCAGAACTCGAACCAGAGAGTGACGCTGGCCCAGTTGAGGCAGAAGC ACAAGAAGTCTGAACCCATCTCCATGGTCACTGCCTATGATTACCCTTCCGCAGTGCCTGTGGACATGGCTGGCATCGAC ATCTGCCTCGTCGGTGATTCCGCAGCCATGGTGGTTCACGGTTACGACACCACCCTCCCCATAACCATTGATGAAATGCT TGTTCATTGTCGTGCCGTTGCTCGTGGAGCCAAAACACCTCTTCTTGTTGGGGACTTACCTTTTGGAACCTATGAATGCA GCCCCAACCAGGCAGTGGATGCTGCAGTTCGGATTTTGAAAGAAGGGAGAATGGATGCCATAAAATTGGAAGGAGGGTCC CCTTCAAGAATTGTTGCTGCAAAAGCTATTGTTGAGGCTGGAATAGCAGTGATGGGGCATGTTGGGCTTACTCCCCAGGC AATTAGTGTTTTAGGGGGATTTAGACCTCAAGGAAGGAATGTTGCTAGTGCTGTCAAGGTTGTGGAGACGGCATTGGCTT TACAAGAAGCAGGGTGCTTCTCGGTTGTTCTAGAATGTGTGCCTGCACCTGTGGCTGCTGCAGCAACAGCAGCCCTTCAA ATTCCGACTATCGGAATTGGAGCTGGACCCTTTTGCAGTGGACAGGTACTAGTTTATCATGATCTGCTTGGTATGCTACA ACACCCCCACCATGCAAAGGTTACTCCAAAATTTTGTAAGCAATATGCCCGTGTTGGAGATGTCATCACTAAAGCATTAG TGGAGTATAAGGAAGATGTGATAAATGGTTCATTTCCTGATGCTCAGCATAGCCCATATAAGATTAGCGAAACAGATGCT AATGGTTTCTTGAATGAGTTGCAAAGGTTAGGTTTTGACAAGGCAGCATCTGCGGCTTCTGATGCAGTTCAGAAAATGGT AACAGCCAAGTCAATTGGTGAAAGAACCTCAACAAAGTGA
Protein sequence (LotjaGi5g1v0035000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACIVAKRRATTQCSSLLRCIRSMSNVPENTVYSGPISQNSNQRVTLAQLRQKHKKSEPISMVTAYDYPSAVPVDMAGID ICLVGDSAAMVVHGYDTTLPITIDEMLVHCRAVARGAKTPLLVGDLPFGTYECSPNQAVDAAVRILKEGRMDAIKLEGGS PSRIVAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRNVASAVKVVETALALQEAGCFSVVLECVPAPVAAAATAALQ IPTIGIGAGPFCSGQVLVYHDLLGMLQHPHHAKVTPKFCKQYARVGDVITKALVEYKEDVINGSFPDAQHSPYKISETDA NGFLNELQRLGFDKAASAASDAVQKMVTAKSIGERTSTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| PANTHER | 35 | 328 | 294 | 1.5E-142 | ||
| Gene3D | 42 | 323 | 282 | 9.3E-116 | ||
| Pfam | 44 | 307 | 264 | 2.9E-107 | ||
| SUPERFAMILY | 44 | 310 | 267 | 1.26E-94 | ||
| Hamap | 45 | 312 | 268 | 39.972 | ||
| CDD | 47 | 306 | 260 | 7.95798E-138 | ||
| TIGRFAM | 48 | 311 | 264 | 1.8E-88 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate. | ||
| Biological process | Pantothenate biosynthetic process | The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. |
Expression pattern of LotjaGi5g1v0035000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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