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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0035300 |
| Transcript ID | LotjaGi5g1v0035300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT3G49810.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30; TrEMBL-Plants: tr|I1M8V2|I1M8V2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0035300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5851202..5853505) extracted from Lotus japonicus Gifu genome v1.2.
CACAATCAAATTCACAAATGCAAGCTTTTTCTTCATGTGTGCTTCTTATCCCATTTTCACCCTTAGCCCTGTACCTTTCT CTCATGGTAAATTGAAAGTTGCATTACACAGTCCAGAACTGTTTTCTTAGACCTATTTTGTTCTTGTTGTGTTAATGATA TCTCACTTTTCTTGGAGCTTCAAGATCAAGAATAACAAGAAGAACAAGCAAAGCTTTGTTGTTAGCCAAGAAAAATCAAC ACTCAATCATGCCATCCATGATGAAAAATAATCAAGGTAACACCACTTTTTGACCATAGAAAAAAGCAAGCACAGTTGAA CAAAGAAAAGAAAAAGGTTTTTGTGACACCTTTCACAACAACCCCTTTTCTTCTCTCAACCTTCCTCCTCTCTGTTATCT TCCCCACAAGTTTCTTGTTCATTCTTCAACCAAAATTTGAAGCATTTTGTGATCTTTAGGCTTATGTATTTTCATCAAAC AGTTGGTGGGCATGCAACTATGCCTCTGTATCAGGCATCAAAGGATAGAAAAGATGAGGGTTTGAAGATTGTTGATGTTC TGGGTCTTGAATCCACCATGAAAGGGGTTGAGATTTTGGATCTGAAGGTGATGATTGAGGAGATGGAATCAATTGATGTT CCATCTGTTTTCATCTGTCCAATCTCTCTTGAGCCAATGCAGGACCCTGTGACCCTTTGCACTGGCCAAACCTATGACAG ATCCAACATCCTCAAATGGTTCTCACTTGGTCACAAAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCTGTCA CACCCAACAAGACACTCACCCACTTGATCCTCACATGGTTCTCTCACAAGTACTTGGCCATGAAGAAGAAGCTTGAGGAT GTTCAGGGAAGAGTCTTGGACCTCTTGGATATGCTCAAGAAGGTGAAGGGTCAAGCCAGGGTTAAAGCTCTTAAGGATCT GAGGCAACTTGTTGCAGCTAATGTGTTTGCTAGAAGGACTGTGTCAGAAAATGGTGGGCTTGCTTTGGTTTGTTCTTTGT TAGGTCCTTTCACTTCACATGCTGTAGGCTCTGAAGCAATTGGGATCATTGTGAATTTGGATTTGGTATCTGAGCTGAAG AGGAATTTGATGCATCCTGCAAAGGTTTCATTATTGGTGGATATCATGAATGAGGGAACCATTGAGACAAAGATGAACTG TGCTAAATTGATTGAGATGTTGTTGATTGAAGGGAGTGGGAATGGGAATGAAACAGAGATTGTCTCAAGCTTGAGTCTTT TGGTTGGGTTGTTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGTCTCATTTTACTCAAAGCTATA TGTTCTTCCCATGAATCTGTTAGAAGCTCTGTGATAAGCATAGGGGCAGTTCCTCAATTGATTGAGCTTTTGCCTAGTTT GAACAAGGAGTGCTTAGAGGTAGCACTTTATATTCTAGAGGTTTTGTCAACTCTTCCAGAGGGAAGAATGGCCTTGAAAG AGTGTCCAAACATCATTCCTAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGGTGCACTCAATTTGCATTGTCAATA TTGTGGGCTATCTACAAGCTTGCACCTGAAGAATGTGCCTCAAAGGCAGTGGAAGCTGGGTTAGCAGCTAAGTTGTTGTT AGTAATTCAGAGTGGTTGCAACCCAGTTTTGAAGCAAATGTCTTCTGAGTTCTTGAAAATGTGCAGTGTGAATTACTCTA CTAGTATTTTGATTTCCAAGTGTATGCTCAGCACAATACAATGAAAAACAAGAGAAAATTATTTGTAGCTTCAGATACAG CCAGTTATATGTTCATAAAGTTTATGAAATTCAGACATTTCCCCTTGCATTTCAAAAACTGTAAATTGATGGTATATGAT GTAACTTGTTAGTGATTTAAATCAGCATTCTGCCTGTCTTTGATTCCAGTTCTGCAACAGTTTTATCTATGTGATGTTGT AGGCCGTTGAGATTGAAGTTGTTGGAAAAGCTGAGTTGTGAGATTACACAAGATTTTTGATTGGTTCAGATCTTTCTCCC TAAATAGAACCAGAGTTATTTTCAATTTCAATTTTGTTTAAATTCAACTTCGAATTTCTGCAAACTACACTAGTGTTTAA TGCTTTGAAGATTTTATATTTTTTCTATGTTATTCCTTGAAGATGATTGCTGTTGTAATATAACAGTCAAAGAAGCAAAT ATTGTTTTGACAAGTTGGATTTGGACCCCTCCCCACCCAAATTAATGTTCATCCCTCTTCAGAT
CDS sequence (LotjaGi5g1v0035300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTTCATCAAACAGTTGGTGGGCATGCAACTATGCCTCTGTATCAGGCATCAAAGGATAGAAAAGATGAGGGTTT GAAGATTGTTGATGTTCTGGGTCTTGAATCCACCATGAAAGGGGTTGAGATTTTGGATCTGAAGGTGATGATTGAGGAGA TGGAATCAATTGATGTTCCATCTGTTTTCATCTGTCCAATCTCTCTTGAGCCAATGCAGGACCCTGTGACCCTTTGCACT GGCCAAACCTATGACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAAAACTTGTCCCACAACAATGCAAGAGCT TTGGGATGATTCTGTCACACCCAACAAGACACTCACCCACTTGATCCTCACATGGTTCTCTCACAAGTACTTGGCCATGA AGAAGAAGCTTGAGGATGTTCAGGGAAGAGTCTTGGACCTCTTGGATATGCTCAAGAAGGTGAAGGGTCAAGCCAGGGTT AAAGCTCTTAAGGATCTGAGGCAACTTGTTGCAGCTAATGTGTTTGCTAGAAGGACTGTGTCAGAAAATGGTGGGCTTGC TTTGGTTTGTTCTTTGTTAGGTCCTTTCACTTCACATGCTGTAGGCTCTGAAGCAATTGGGATCATTGTGAATTTGGATT TGGTATCTGAGCTGAAGAGGAATTTGATGCATCCTGCAAAGGTTTCATTATTGGTGGATATCATGAATGAGGGAACCATT GAGACAAAGATGAACTGTGCTAAATTGATTGAGATGTTGTTGATTGAAGGGAGTGGGAATGGGAATGAAACAGAGATTGT CTCAAGCTTGAGTCTTTTGGTTGGGTTGTTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGTCTCA TTTTACTCAAAGCTATATGTTCTTCCCATGAATCTGTTAGAAGCTCTGTGATAAGCATAGGGGCAGTTCCTCAATTGATT GAGCTTTTGCCTAGTTTGAACAAGGAGTGCTTAGAGGTAGCACTTTATATTCTAGAGGTTTTGTCAACTCTTCCAGAGGG AAGAATGGCCTTGAAAGAGTGTCCAAACATCATTCCTAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGGTGCACTC AATTTGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCACCTGAAGAATGTGCCTCAAAGGCAGTGGAAGCTGGGTTA GCAGCTAAGTTGTTGTTAGTAATTCAGAGTGGTTGCAACCCAGTTTTGAAGCAAATGTCTTCTGAGTTCTTGAAAATGTG CAGTGTGAATTACTCTACTAGTATTTTGATTTCCAAGTGTATGCTCAGCACAATACAATGA
Protein sequence (LotjaGi5g1v0035300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYFHQTVGGHATMPLYQASKDRKDEGLKIVDVLGLESTMKGVEILDLKVMIEEMESIDVPSVFICPISLEPMQDPVTLCT GQTYDRSNILKWFSLGHKTCPTTMQELWDDSVTPNKTLTHLILTWFSHKYLAMKKKLEDVQGRVLDLLDMLKKVKGQARV KALKDLRQLVAANVFARRTVSENGGLALVCSLLGPFTSHAVGSEAIGIIVNLDLVSELKRNLMHPAKVSLLVDIMNEGTI ETKMNCAKLIEMLLIEGSGNGNETEIVSSLSLLVGLLRLVRDKKHPTGVLTGLILLKAICSSHESVRSSVISIGAVPQLI ELLPSLNKECLEVALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSERCTQFALSILWAIYKLAPEECASKAVEAGL AAKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSTSILISKCMLSTIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 443 | 403 | 1.5E-206 | – | |
| PANTHER | 41 | 443 | 403 | 1.5E-206 | – | |
| Gene3D | 46 | 139 | 94 | 3.2E-26 | ||
| SUPERFAMILY | 53 | 127 | 75 | 3.03E-25 | – | |
| ProSiteProfiles | 58 | 132 | 75 | 35.968 | ||
| Pfam | 59 | 129 | 71 | 3.0E-15 | ||
| SMART | 62 | 125 | 64 | 2.3E-29 | ||
| CDD | 63 | 105 | 43 | 1.38198E-24 | – | |
| Gene3D | 140 | 439 | 300 | 5.2E-19 | ||
| SUPERFAMILY | 144 | 429 | 286 | 1.02E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi5g1v0035300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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