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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0036300 |
| Transcript ID | LotjaGi5g1v0036300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor; TAIR: AT2G22840.1 growth-regulating factor 1; Swiss-Prot: sp|Q6AWY3|GRF6_ORYSJ Growth-regulating factor 6; TrEMBL-Plants: tr|A0A072VEY4|A0A072VEY4_MEDTR Growth-regulating factor; Found in the gene: LotjaGi5g1v0036300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5981954..5988588) extracted from Lotus japonicus Gifu genome v1.2.
AAGATTGTTTCAACTTTCAATAGACAACATGTAAGACATTGTAAGTACATTCCTAAACAAGTTATAGATTCAAAGACATA TTTAACATGTGATGTAGTTGAGATCGATGGAGTCGAACTCATCCAAGCTTTTATTTATAGATGAACTAGTTACTACTCTC TCTATCTCTCCAATTATTTTATCTTAGCCAAGACATAAACTCCCAAAAAAACAAAACCAGTCCGGTTTCTAGTTTCAGCT TAGCTTTAAGTTGTCAAAGCATATCTTCTATTTCTATTTCCATTTCACTTCCCTTCTCTGTTCTCCCTCTCTCTCTCTCT CTCTCCTCCCATGAGATGTGTCTTCCTTTTCCAAAGGGAGCTTGTATTGTACTATTGTTCCTGTCTTGCTCTCAGGAAGA ACTGCCCCATTCCCATTCCCTTTGCTTGATGCTTGTCTAGTTTTCTGCTTTGTTTTTCTTTCTTTTTTCTTAGATGGATC TTGGGGTAGTGGGTTTGGATGGGTTGGTGGGTTCAGAAACAGGATTTGTTTCTCTTGCTTCAGATCCTGAGGCAAAGCAC AAGTGGTACGGATCTGGGTTCCTTAAGCAAGAGAGATCTGCCACAACTGAAGATGATGACTTGAGAAGCTCCAAACTTGC CAAGACTAATAATGATGACAAAGCAATGCAGCAGTTTCAGTTGCAGCAGCAGAACAAGAACTCTTCTTCATCATCACTGA GATCTAATGCTACTTTGTTTTCTGATGGCCATCACCAGCAACACATGCTGAGCTTCTCTTCTCCAAAGCTTGAAACTTAT TCACTAGACAAGAACAACCCAAATGCCACATTGTCTTATTCTTATCACCCTTTGTCTAGTTACAGCAGAAACACAGGTAC CCATCATGAAAAGTTAGCATTTTTTGAGGTTATTTGTGAAGGGGTTTGTTTGATTCAGTTTTTGATTGTGTTGTGGGATA TGGAATATTTGGTATCTATTTGTAAGAGGGAGATAAAAAATGGGTTGTTACGGTCTGATTCTACAGTACTGGTTGAGGGT CTTTTCATGGAAATATTTGAGTGGTGTCTGTTTTGAAGTCATTTCAAGAGAAAAAAAAAAGTGAAACCAAAAAAAATATT TTTTGCTCCCAAATTTCCCATCATCTTCCAGATTTAGGGGGAGGGGTTTTGGTTAAATTTTGCACAGTAAACTAGAGGGT ATCAAAGGAGAAAAAATTATGAAATAGAGAGCTATAACATGTAGGTGCAAGAAAGAAAGAAAAAAAAAATGTCCCAAAAT TTGATTGGTTTCTGTTCTGTACTCTCTTTCTCTAAAATCTGTTTTTCCTTTTTCCATTTCTTGGAAAAAAGGTGACTTGA CTGATATTTCTTCAAATCAGAGGAGGGAGAAAATCTATGAAATTTTTCAAACCATTGATAAAAACACTCCAAACAAAACA CCTAGAGGGTTTTCTGTCACTTCTCTTTTTCTCAGATTCTTTTTTGAGCTCTGAAGTAACTTTCTTGTTGGGGTATTTTC AACAGGTTACAGTTCAGGAAGCATGCATGGGGCTTTTGCTGGTACCAGAGGACCATTCACTCCATCTCAATGGATGGAGC TTGAACACCAAGCCTTGATCTACAAGTACATCACAGCAAATGTCCCTGTACCTTCACATCTTCTCATCCCCATCAAAAAA GCACTTGAGTCTGCTGGCTTTTGCAATTTCTCTACTGGAATCCTCAGACCCAATGCATGTATGTAAATGTTCCCTTTTCC ATTTTCAATTCTCAAAATATCTCATTTCCAAAGCCAAAATAAAAAATAAAAAAATTCAAGGTATGGATTATTGATGAGAA GGAAAGTTAACCAAAGTGACCCTGTATTGAAAGTGTTATTTTTCTCTCTAATCCTTGACCTTTTTCAATAGTTATGTCAT TTTTGTGTCTATCTTTTTATTTATGAATATTAAATATGTGAGGGTATGCAGAGATAGACTTTAAATTTAAACATTACCTT GAAATTTTTATGTGACAGAATCTATTCTACTCCCATGCTAGGTTCTTCTTGTTGCCCTATTTTGTGTCACTAGGCAACAT TTTATGGGCAAACACCAATGAATGAAGCATGAAAAGAAAAGACAAATTTTTTGTTTGTTTGGTTTGGATTTTTTGTTTTA ATATGACTCTAGTCTAGAGATCAAGCTGTCTTTTTTTTGGTGTTAAATTTGACCTTTCAGTAATTATGTCATTTTTGAAG CTATCTTTTTATTTATGAATATTTAATATGTGGGGCATGAAGAGATAGACAAATTGAAATGTAAACTTGAAATTTTAATA TGAAAGAATCTGTTCTATTCCCAATTTCCCATTCAGTTTAAGTACATGTTTGGAAGCTCATTTGAGAATTACGATGAAGT CAAATTCATGATGGACTAAAGCAAGAGCTAAGCATAGTTGCTTATGTCCATAATAATTTTGACTTTCTCGTTGATTTCAA ATGAACTCTTGTTGCCCTATTTGTGTCACTAGTCATCATGTAGTGGACAAACATGAATGAATGAGGCATGAAAAGAAAGA CAAAATTTGGGTTTGTTTTGTTTGGATTATGATATTTTTATTTTGTGGATGCAGTGGCATGGGGAGGTTTCCATCTGGGA TTCTCCAACAACACTGATCCTGAGCCAGGAAGGTGTAGGAGGACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGT TGTCGATCAGAAGTACTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCC ATGCCGTTACTGCCACCACCACTACAACCACCAATGCGAATGCTGCTACTCCAAATGGTTTGAAACTCAATGCTTCCTCC ATTGTGGTGCCCGGCAACAGTGCTTGCAACAACCTTACCTTTGCAAACCAGGAGCACAAGAATATGCAGAACCCTCTTTC TGCAGATAACACTTCAGCCTCCAACACCATCAACAGGTGAGAAAACTTGACATTAAGAAGGTATCTAAAAGGTTTGGTTT ATGCCTCTTTGAGAATTATAACAGAATAGAATCAGTACAAATATTGTTTCAACCAATGTGTATAGATACAATATGTTTTG TCTACTGTGAACTCAGGAAATTCTGGTTCACAGGTTAAATGGACTTCTTTGGAAATTAATTTTAGCACATAAAGAGCATA TTGTAAATAACATGTACTATATGTTAGAAGTAAAAACATGGTTCATGGGTGGACCAATTTTTAAGATGGTCTACCGTAGA ATTGCCAGATACAACTAATCAAAAGCTTAAAGTATATTATAAGATTAGTAAAAAAGACATCAAAGATCTAAAGTTGTTTG AATACTTTGTTAATTTTTTATTTGTTATACTCATAGGAAATGTGTTGATGGAAGAGCAACTCTTTCTAGGCATGATGAAT TTTGTAACTTTTTATGTGTGGAAAGGCTGTTTTCAGCTAGAAACTAGTAATATGTGCTTGCTGTGATGTTCTCTTTTTAA AGGGTGGTTCTTTTTTCCTTGCATGCAGGATGTTCATGAATTGCAAAGAGAATGATAAGGCTAGTGAGAGGATGCAGGAT GGCCCTGTCCTTCCAATGCTACCTCCTACCCTTGAGCTGAAACCGAAGGAAAACAACAATCCCTTCATGATTCAAAAACC TGATTTTCCTTATGAGGAACCCTCAAGGAACAGTGAGTTTGGTTTTGTCACTTCTGATTCCTTGCTTAACCCTTCACAGA AAAGCTCCCCCACAACCACAACCTTGCTTAGTAGCAGAACCTCTGCAGATTCTTCACAACAGAACACTGGTTCCCAACAT CCCCTCAGGCATTTCATTGATGACTGTCCTAAATCACAATCTGATCATCATCATCATCAACAACATCATCATCGTTCTGG TGTTTCGTGGACAGAGCTTGATCACATGCAGTCAGATAGGACTCAGCTTTCAATTTCCACTCCAATAACCTCCTCAGATC ACTTCTTGTCATTCAATTCCTCACCCTCCAATGAGAAGCTCACACTCTCACCTTTAAGGCTATCAAGGGAGTTAGACCCA ATTCAAATGGGTTTGGGTGTTGGAAGTGCTGCTATCAATGAATCAAATAACACTACTACTACTAGGCAAGCAACTAATTG GATCCCAATTACATGGGAAAGTTCAATGGGGGGTCCTCTTGGAGAGGTTCTGCATCTTAGTACTAACAACAATGTAAGTG ATCACTGTGACAAAAACTCTTCTGATCTCAACCTCATGACTGATGGGTGGGACAATAGTCCTCCAATAGGGTCATCTCCT ACTGGGGTCCTTCAAAAGACAGCATTTGGATCACTCTCTAATAGTAGTGCTGGGAGCAGTCCAAGAGCAGAGAACAACAA GACTCAAGAAGGGGCCAGCTTGTGCAATGATCTCCTTGGATAAAAGAACCTTCTAACAAAAATATCCATATATAGGAGAA GAAGGGCTTGCTGTTGAACTATGTGAAAAGTCTTGGAAGGAAAGAAAAGAACTTTGTTTGACTTTAGTTGTTTATTAGTT CAGTTTATATATAATATATTATAGTTCTGCGTTTGAAGAGGGGTGAGCCTGAGCTTTGGTTTACGGTAAGATTGCTCCTA TGTGACTTTGCGGTCACAGGTTCGAGTTCGAGCCGAGAAATCAACCTCTTGTAAAAAAATGCAAGGTAAGACTTCTTACA TTAGATTTACAAAGTGGGTATGGTCCCTCCCTGGACCTCTTGTAGTACTAGGTTTGCCCTTTTCTTTTTTAGTAGGTTCT GCATTTGCTTGAATTTGTTTCTGTTGTCTTGTGAGAGAGTTTTGGCAAAGTTGTATTCAGTGACTGATGTTGGTTGGAGT GTGGACATGGTTTTTAAGATGGTCCAAGTGGGGACTCTGATTGCATTAAGTTACCGTTTGATATTTAGTAATTGAGAGTT TCTGATTTTATGCTACTCACGGTGCGTACATAGAAAAAAGGGAAATGAAGTTAATGCAAGAAACAAAAATAGAAATGTTT CTTATTGCAAGTGAAGTAGCTTTGATGTTCTTCCTCAAACTTTCCAAGAACAACTACTTTCTGTTTATTTCCAATAATTA ACCGGTGTTCCTTAAAAGCTACGCTTAAAAATGTGGAGGAAAGTTTAGAAAGAAATAAATCAAGAAGATTAAAGGAACTC GGAAGTTAGGAGTTAGGAGTTCATAAGAGGAAATTTTAGAGATAATTATTCAGCATCACAAATTGAAATCCTATCCGTAA ACAGTCACTATCAAATGTTGAAAGTACAATTAAGCAAATAGTTTTTTGTTAAAGTTGAACGAACTTACATATGAAAAAAG CCTTGATTGGAAGAGCTTATATCATCATGATGTCAATGTTTCAACTAAGTTGTACTTATTTTTATCTCTAGTATGGAGCA AGGATTTATCTTTAAAAGGTCTAACAACAAATTAAATAGGGTTGTCTAAGTGAACAAATAAGGCTATAACTCCATCATAA ATGGACCAATATCATTGTATATAAGAAATCAAGTAAAAAATATGTGAAGTTTTTCTTTTGTGAAAGAGCGTGTTTGGTAG AAGCTTAAGGGTTGGAAGGATAGAGCTCACTCTAGAGCGGGCATGAAGTTTCTAGTTAAAGCAGTAGTTTTGGTTATTCC AACTTATGTTATGTCATGCTTTGCTCTACCTAATGGGCTTTGTGATTAGATTGAGGGGATAGTGAGAAAGTTTTATTGGA GTGGTGATGCTGATAAGTGGAAAATGCATTGGTTGTAGTGGGAGAAGCTTTGCAAACCAAAGATGTGTGATGGTCTTGAG TTTCGTGATTTTAAATCTTTTAATACTCCCTTTACTAGGAAGAATTGGTGGAGAATTTTCTTGATTCCTTATTCCCTTGT TTGTAGTTTTTTAAAAGTTGTTTACTTCCCTCACGATGATGGGCATAAGGTGAGAATTTTGGAGGATAATTGGATTCCTA AGGGATCTTCTTTTATCCCTCCTAATATGGAGATCACTAGGAATGACCCTCTTATGGTGTTTGATCTTATTTGTGAGTTG ACTGGGGATTGAGATTGTCATATTATTCAGGCTTGTTTTGGAACGAGGACAGAAGCTTCCACCTACGCCATTCCTTTATG TCCTTCTCGCATGGAGGATGTGTTCTTTCGGCCTCTTACATCAAATGGTCAACATTAGACTAACACGGGGAATTCTTTTA TCCGCCAACGAGATGCCTCTTGTATGGCCTCTCGTCTAATGACAGGGTGCTACCCGATTCTATTTATAAGAAGATTTGGC ATTGTGGCGCTCTCCTATATGCAAAGAGCTTTTTGGAGGGTGTGTATGCGGGCATTGTGCTGGTTCGAGCTAGTCTTAGA AAGAGGGGTGTGGATGTTGATCCTGCTTGCCCTTTGTGCGCGGTTGAGCATGAATCTTTGGAGCATGTCTTCTTTGATTG CATCAATGCGAATCAACTTTGGTTTGCTTCCGGGTTAGGTTTGTGTTCTCATCAGAGGCATGCGAGATGTGTTATTGTTT ATGTTCGTGATTTTCCGCATGCCTTTGAAAAGGTTGTTGCCCAGCAATTTGCAACCATCCTTTATTGCATTTGGG
CDS sequence (LotjaGi5g1v0036300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTGGGGTAGTGGGTTTGGATGGGTTGGTGGGTTCAGAAACAGGATTTGTTTCTCTTGCTTCAGATCCTGAGGC AAAGCACAAGTGGTACGGATCTGGGTTCCTTAAGCAAGAGAGATCTGCCACAACTGAAGATGATGACTTGAGAAGCTCCA AACTTGCCAAGACTAATAATGATGACAAAGCAATGCAGCAGTTTCAGTTGCAGCAGCAGAACAAGAACTCTTCTTCATCA TCACTGAGATCTAATGCTACTTTGTTTTCTGATGGCCATCACCAGCAACACATGCTGAGCTTCTCTTCTCCAAAGCTTGA AACTTATTCACTAGACAAGAACAACCCAAATGCCACATTGTCTTATTCTTATCACCCTTTGTCTAGTTACAGCAGAAACA CAGGTTACAGTTCAGGAAGCATGCATGGGGCTTTTGCTGGTACCAGAGGACCATTCACTCCATCTCAATGGATGGAGCTT GAACACCAAGCCTTGATCTACAAGTACATCACAGCAAATGTCCCTGTACCTTCACATCTTCTCATCCCCATCAAAAAAGC ACTTGAGTCTGCTGGCTTTTGCAATTTCTCTACTGGAATCCTCAGACCCAATGCATTGGCATGGGGAGGTTTCCATCTGG GATTCTCCAACAACACTGATCCTGAGCCAGGAAGGTGTAGGAGGACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCC GTTGTCGATCAGAAGTACTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGG CCATGCCGTTACTGCCACCACCACTACAACCACCAATGCGAATGCTGCTACTCCAAATGGTTTGAAACTCAATGCTTCCT CCATTGTGGTGCCCGGCAACAGTGCTTGCAACAACCTTACCTTTGCAAACCAGGAGCACAAGAATATGCAGAACCCTCTT TCTGCAGATAACACTTCAGCCTCCAACACCATCAACAGGATGTTCATGAATTGCAAAGAGAATGATAAGGCTAGTGAGAG GATGCAGGATGGCCCTGTCCTTCCAATGCTACCTCCTACCCTTGAGCTGAAACCGAAGGAAAACAACAATCCCTTCATGA TTCAAAAACCTGATTTTCCTTATGAGGAACCCTCAAGGAACAGTGAGTTTGGTTTTGTCACTTCTGATTCCTTGCTTAAC CCTTCACAGAAAAGCTCCCCCACAACCACAACCTTGCTTAGTAGCAGAACCTCTGCAGATTCTTCACAACAGAACACTGG TTCCCAACATCCCCTCAGGCATTTCATTGATGACTGTCCTAAATCACAATCTGATCATCATCATCATCAACAACATCATC ATCGTTCTGGTGTTTCGTGGACAGAGCTTGATCACATGCAGTCAGATAGGACTCAGCTTTCAATTTCCACTCCAATAACC TCCTCAGATCACTTCTTGTCATTCAATTCCTCACCCTCCAATGAGAAGCTCACACTCTCACCTTTAAGGCTATCAAGGGA GTTAGACCCAATTCAAATGGGTTTGGGTGTTGGAAGTGCTGCTATCAATGAATCAAATAACACTACTACTACTAGGCAAG CAACTAATTGGATCCCAATTACATGGGAAAGTTCAATGGGGGGTCCTCTTGGAGAGGTTCTGCATCTTAGTACTAACAAC AATGTAAGTGATCACTGTGACAAAAACTCTTCTGATCTCAACCTCATGACTGATGGGTGGGACAATAGTCCTCCAATAGG GTCATCTCCTACTGGGGTCCTTCAAAAGACAGCATTTGGATCACTCTCTAATAGTAGTGCTGGGAGCAGTCCAAGAGCAG AGAACAACAAGACTCAAGAAGGGGCCAGCTTGTGCAATGATCTCCTTGGATAA
Protein sequence (LotjaGi5g1v0036300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLGVVGLDGLVGSETGFVSLASDPEAKHKWYGSGFLKQERSATTEDDDLRSSKLAKTNNDDKAMQQFQLQQQNKNSSSS SLRSNATLFSDGHHQQHMLSFSSPKLETYSLDKNNPNATLSYSYHPLSSYSRNTGYSSGSMHGAFAGTRGPFTPSQWMEL EHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGILRPNALAWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDA VVDQKYCERHMNRGRHRSRKPVEGQSGHAVTATTTTTTNANAATPNGLKLNASSIVVPGNSACNNLTFANQEHKNMQNPL SADNTSASNTINRMFMNCKENDKASERMQDGPVLPMLPPTLELKPKENNNPFMIQKPDFPYEEPSRNSEFGFVTSDSLLN PSQKSSPTTTTLLSSRTSADSSQQNTGSQHPLRHFIDDCPKSQSDHHHHQQHHHRSGVSWTELDHMQSDRTQLSISTPIT SSDHFLSFNSSPSNEKLTLSPLRLSRELDPIQMGLGVGSAAINESNNTTTTRQATNWIPITWESSMGGPLGEVLHLSTNN NVSDHCDKNSSDLNLMTDGWDNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTQEGASLCNDLLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 614 | 549 | 8.2E-211 | ||
| PANTHER | 66 | 614 | 549 | 8.2E-211 | – | |
| SMART | 150 | 186 | 37 | 1.6E-13 | ||
| Pfam | 151 | 184 | 34 | 8.0E-16 | ||
| ProSiteProfiles | 151 | 186 | 36 | 24.351 | ||
| ProSiteProfiles | 220 | 264 | 45 | 25.847 | ||
| Pfam | 221 | 263 | 43 | 5.8E-21 | ||
| MobiDBLite | 253 | 286 | 34 | - | – | |
| MobiDBLite | 267 | 286 | 20 | - | – | |
| MobiDBLite | 362 | 459 | 98 | - | – | |
| MobiDBLite | 388 | 431 | 44 | - | – | |
| MobiDBLite | 575 | 630 | 56 | - | – | |
| MobiDBLite | 575 | 623 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. |
Expression pattern of LotjaGi5g1v0036300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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