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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0038100 |
| Transcript ID | LotjaGi5g1v0038100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G49690.1 myb domain protein 84; Swiss-Prot: sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3; TrEMBL-Plants: tr|A0A072VEW3|A0A072VEW3_MEDTR Myb transcription factor; Found in the gene: LotjaGi5g1v0038100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6369523..6371385) extracted from Lotus japonicus Gifu genome v1.2.
AGATCTCATACTCTCTCTCCTATAATTCTGAGTTGGGGTTGTAAAGAGAGAAGGGTTACCCCAATCAATCAAAAAGCTCA AAACACACAGGAAGACACTGCACAAAAAGGCAACATGGGCAGGGCTCCTTGCTGTGACAAAGCGAACGTGAAGAAAGGTC CATGGTCGCCAGAAGAAGATGCCAAGCTCAAGTCCTACATAGATGAGCATGGCACCGGTGGCAACTGGATTGCTTTGCCA CAAAAGATTGGTATATCAATTATCTCGCAGAAACAAACCCTACTTAATATTTCAGTTTCCTTTTCTTTAATTTCTTCTCC TTGATCAATTATTCATTCTCATATATCTTCATCAATTTCATTTGCTACATCTACATGTACATTAAATCATTAATATTGTT AGCTAGGACAGTCTAATAGGTTTTATCTTGGTTTGAAAACTCTTCTATAATTCATTATGAAGTCAAAATTATTCTGAGAA GAAATTTCTGTGAGTAGCATCATAGTTCAAAAATTGATTCTGATGAAAGCAAAATTGACCAAATTATGCTATCATTTGTT CATTAAAGAAAATTGTTAGGACTTTAACTTTTTCTTTGTTTTTCTTAATCAGGACTGAAGCGTTGTGGCAAGAGTTGCCG TCTCAGGTGGCTAAACTACCTACGCCCTAATCTCAAGCATGGTGGTTTCTCCGAGGAAGAAGACAACATCATTTGCAGCC TTTACATTAGTATTGGAAGCAGGTACATATCCTGTACAGTTTCTATCCTCAATGATTTGGTGGTGCAACAGATCATGATT GACGACCTTGCTAGCAATATATATATATATATATATATATATATATATATGATTATTATTACCAAGTTTTGATCAACTTC TTTTCTTCATAATTATATTAATTCTGAAATTCAAAAGCTCCGAAGCTTCTTCGCATAATTGATTTTGGTCTTAGAATTAA TTGTATAAGTGAAAACCTTTTGAGCGCAGGTGGTCGGTGATTGCAGCTCAACTGCCCGGAAGAACCGATAATGACATAAA GAACTACTGGAACACAAGGCTCAAAAAGAAGCTTTTTGGGAAGCACCGTAACAAAGAAGCACGAAATAGAGGCAACGGTG GTGTTAAGCAAGAAAGCAATAATAGAGAGAGTGTTGAATATCCCTTATCCTTGGTTCATGAAAATAGTACTACTCATCAA CAACCATATTTGCCACACATCCCTGTGCTATCACCACCGCCACCTTTGCAATACACAAACCAAGGCGCTAGTTTCAAGGA CCAAGATTCTATTAGAAAATTGCTCATCAAACTTGGAGGGAGATTTTCCAATGAGTATCATCATCCTACCTTTGATGGGT AACAACAAGATTTTCAAGAAAAAGTTCATGTGGACTCTTCTTCTTGCATTAACAACAATGAAGTAGTACAATTTGGTCAG TACTCTCCACAGGTTGGTGTTGGAGTACTTGACATGGTGCAAAGAGAAGGGAGTTTGCCACCAACAATCGAAGCAATGGT ATCTACTAATTCTCCACAAAGATTGGATGGGTTGGAGTTTTTCTATGGGGAGGAGATAATAGATGATAAGATAATAGGGA CCAGTAGTAGTTGTAGCCAAAGTACTAGCTGGGGTCTTGAAACTTGCAATCCTATGTATCATTCACTTCCTTTGAATTTC CAAGGTTAATTATAAAAAGTTGTGATGCAAAGAGACTCCACAAGAACTAATGTTCTTACAAGAGTTTAATTAGTTACCTC GGGGTGTAATACATTCTTGTACATTATTGTTGATTGCTGTTGCTATATATAGCCATCTATGCATGGCAAAAGGATGCTCT TGAAGTTGATTATTAAAGGCAAT
CDS sequence (LotjaGi5g1v0038100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGGGCTCCTTGCTGTGACAAAGCGAACGTGAAGAAAGGTCCATGGTCGCCAGAAGAAGATGCCAAGCTCAAGTC CTACATAGATGAGCATGGCACCGGTGGCAACTGGATTGCTTTGCCACAAAAGATTGGACTGAAGCGTTGTGGCAAGAGTT GCCGTCTCAGGTGGCTAAACTACCTACGCCCTAATCTCAAGCATGGTGGTTTCTCCGAGGAAGAAGACAACATCATTTGC AGCCTTTACATTAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAACTGCCCGGAAGAACCGATAATGACATAAAGAA CTACTGGAACACAAGGCTCAAAAAGAAGCTTTTTGGGAAGCACCGTAACAAAGAAGCACGAAATAGAGGCAACGGTGGTG TTAAGCAAGAAAGCAATAATAGAGAGAGTGTTGAATATCCCTTATCCTTGGTTCATGAAAATAGTACTACTCATCAACAA CCATATTTGCCACACATCCCTGTGCTATCACCACCGCCACCTTTGCAATACACAAACCAAGGCGCTAGTTTCAAGGACCA AGATTCTATTAGAAAATTGCTCATCAAACTTGGAGGGAGATTTTCCAATGAGTATCATCATCCTACCTTTGATGGGTAA
Protein sequence (LotjaGi5g1v0038100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKANVKKGPWSPEEDAKLKSYIDEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIIC SLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLFGKHRNKEARNRGNGGVKQESNNRESVEYPLSLVHENSTTHQQ PYLPHIPVLSPPPPLQYTNQGASFKDQDSIRKLLIKLGGRFSNEYHHPTFDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 68 | 62 | 9.3E-20 | – | |
| PANTHER | 8 | 207 | 200 | 1.6E-100 | – | |
| PANTHER | 8 | 207 | 200 | 1.6E-100 | ||
| ProSiteProfiles | 9 | 62 | 54 | 14.51 | ||
| SUPERFAMILY | 11 | 109 | 99 | 1.63E-26 | ||
| SMART | 13 | 64 | 52 | 3.6E-12 | ||
| Pfam | 14 | 62 | 49 | 2.3E-14 | ||
| CDD | 16 | 62 | 47 | 2.87864E-9 | ||
| ProSiteProfiles | 63 | 117 | 55 | 20.923 | ||
| SMART | 67 | 115 | 49 | 2.9E-11 | ||
| Pfam | 69 | 111 | 43 | 2.4E-10 | ||
| Gene3D | 70 | 145 | 76 | 7.5E-19 | – | |
| CDD | 71 | 113 | 43 | 1.49568E-8 | ||
| MobiDBLite | 122 | 141 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0038100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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