Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0038800 |
Transcript ID | LotjaGi5g1v0038800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT3G49690.1 myb domain protein 84; Swiss-Prot: sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3; TrEMBL-Plants: tr|A0A151TTL8|A0A151TTL8_CAJCA Transcription factor RAX3; Found in the gene: LotjaGi5g1v0038800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6519232..6521174) extracted from Lotus japonicus Gifu genome v1.2.
TCCAAATTCAATTCCTCTGAGTGCAAATAGATTTGAGGAGTTAATAAATAGATCTCATACTCTCTCTCCTATAATTCTGA GTTGGGGTTGTAAAGAGAGAAGGGTTACCCCAATCAATCAAAAAGCTCAAAACACACAGGAAGACACAAAAAGGCAACAT GGGCAGGGCTCCTTGCTGTGACAAAGCGAACGTGAAGAAAGGTCCATGGTCGCCAGAAGAAGATGCCAAGCTCAAGTCCT ACATAGATGACCATGGCACCGGGGGCAACTGGATTGCTTTGCCACAAAAGATTGGTATATCAATTATCTCGCAGAAACAA ACCCTACTTAATATTTCAGTTTCCTTTTCTTTCTTCTCCTTGATCAATTATTCATTCTCATATATCTTCATCAATTTCAT TTGCTACATCTACATGTACATTAAATCATTAATATTGTTAGCTAGGACAGTCTAATAGGTTTCATCTTGGTTGGAAAACT CTTCTATGTATATAATTCATTATGAAGTCAAAATTATTCTGAGAAGAAATTTCTGTGAGTAGCATCATAGTTCAAAAATT GATTCTGATGAAAGCAAAATTGATCAAATTATATATGCTATCATTTGTTCATTAAAGAAGATTGTTAGGACTTTAACTTT TTCTTTGTTTTTCTTAATCAGGACTGAAGCGTTGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTATCTACGCCCTAAT CTCAAGCATGGTGGTTTCTCCGAGGAAGAAGACAACATCATTTGTAGCCTTTACATTAGTATTGGAAGCAGGTACATATC CTGTACAGTTTCTATCCTCAATGATCACCTAATTCAGATAGGTTTGGTGGTGCAACAGATCATGATTGACCTTGCTAGCA ATATATATGATTATTATTAACAAGTTTTGATCAACTTCTTTTCTTCGTAACTATATTAATTCTGAAATTTAAAAGCTCTG AAGCTTCTTCACATAATTGATTTGGGTCTTAGAATTAATTGTATAAGTGAAAACCTTTTGAGCGCAGGTGGTCGGTGATT GCAGCTCAACTGCCCGGAAGAACCGATAATGACATAAAGAACTACTGGAACACAAGGCTCAAAAAGAAGCTTTTTGGGAA GCACCGTAACAAAGAAGCACGAAATAGAGGCAACGGTGGTGTTAAGCAAGAAAGCAATAATAGAGAGAGTGTTGAATATC CCTTATCCTTGGTTCATGAAAATAGTACTACTCATCAACAACCATATTTGCCACACATCCCTGTGCTATCACCACCGCCA CCTTTGCAATACACAAACCAAGGCGCTAGTTTCAAGGACCAAGATTCTATTAGAAAATTGCTCATCAAACTTGGAGGGAG ATTTTCCAATGAGTATCATCATCCTACCTTTGATGGGTCACAACAAGATTTTCAAGAAAAAGTTCATGTGGGCTCTTCTT CTTGCATTAACAACAATGAAGTAGTACAATTTGGTCAGTACTCTCCACAGGTTGGTGTTGGAGTACTTGACATGGTGCAA AGAGAAGGGAGTTTCCCACCAACAATCGAAGCAATGGTATCTACTAATTCTCCACAAAGATTGGATGGGTTGGAGTTTTT CTATGGGGAGGAGATAATAGATGATAAGATAATAGGGACCAGTACTAGTTGTAGCCAAAGTACTAGCTGGGGTCTTGAAA CTTGCAATCCTATGTATCATTCACTTCCTTTGAATTTCCAAGGTTAATTATAATTAAGTTGTGATGCAAAGAGACTCCAC AAGAACTAATGTTCTTACAAGAGCTTAATCAGTTACCCCGGGGGTAATAAATTCTTGTACATTATTGTTGATTGCTGTTG CTATAGCCATCTATGCATGGCAAAAGGATGCTCTTGAAGTTGATTATTAAAGGCAATACAATTGTGATATTAGATTTATT TATAACTAGCTTTTTAATTTCTC
CDS sequence (LotjaGi5g1v0038800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGGGCTCCTTGCTGTGACAAAGCGAACGTGAAGAAAGGTCCATGGTCGCCAGAAGAAGATGCCAAGCTCAAGTC CTACATAGATGACCATGGCACCGGGGGCAACTGGATTGCTTTGCCACAAAAGATTGGACTGAAGCGTTGTGGCAAGAGTT GCCGTCTCAGGTGGCTAAACTATCTACGCCCTAATCTCAAGCATGGTGGTTTCTCCGAGGAAGAAGACAACATCATTTGT AGCCTTTACATTAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAACTGCCCGGAAGAACCGATAATGACATAAAGAA CTACTGGAACACAAGGCTCAAAAAGAAGCTTTTTGGGAAGCACCGTAACAAAGAAGCACGAAATAGAGGCAACGGTGGTG TTAAGCAAGAAAGCAATAATAGAGAGAGTGTTGAATATCCCTTATCCTTGGTTCATGAAAATAGTACTACTCATCAACAA CCATATTTGCCACACATCCCTGTGCTATCACCACCGCCACCTTTGCAATACACAAACCAAGGCGCTAGTTTCAAGGACCA AGATTCTATTAGAAAATTGCTCATCAAACTTGGAGGGAGATTTTCCAATGAGTATCATCATCCTACCTTTGATGGGTCAC AACAAGATTTTCAAGAAAAAGTTCATGTGGGCTCTTCTTCTTGCATTAACAACAATGAAGTAGTACAATTTGGTCAGTAC TCTCCACAGGTTGGTGTTGGAGTACTTGACATGGTGCAAAGAGAAGGGAGTTTCCCACCAACAATCGAAGCAATGGTATC TACTAATTCTCCACAAAGATTGGATGGGTTGGAGTTTTTCTATGGGGAGGAGATAATAGATGATAAGATAATAGGGACCA GTACTAGTTGTAGCCAAAGTACTAGCTGGGGTCTTGAAACTTGCAATCCTATGTATCATTCACTTCCTTTGAATTTCCAA GGTTAA
Protein sequence (LotjaGi5g1v0038800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKANVKKGPWSPEEDAKLKSYIDDHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIIC SLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLFGKHRNKEARNRGNGGVKQESNNRESVEYPLSLVHENSTTHQQ PYLPHIPVLSPPPPLQYTNQGASFKDQDSIRKLLIKLGGRFSNEYHHPTFDGSQQDFQEKVHVGSSSCINNNEVVQFGQY SPQVGVGVLDMVQREGSFPPTIEAMVSTNSPQRLDGLEFFYGEEIIDDKIIGTSTSCSQSTSWGLETCNPMYHSLPLNFQ G
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 314 | 312 | 1.3E-105 | – | |
PANTHER | 3 | 314 | 312 | 1.3E-105 | ||
Gene3D | 7 | 68 | 62 | 4.9E-19 | – | |
ProSiteProfiles | 9 | 62 | 54 | 13.897 | ||
SUPERFAMILY | 11 | 109 | 99 | 1.04E-25 | ||
SMART | 13 | 64 | 52 | 9.6E-12 | ||
Pfam | 14 | 62 | 49 | 3.2E-13 | ||
CDD | 16 | 62 | 47 | 2.9083E-9 | ||
ProSiteProfiles | 63 | 117 | 55 | 20.923 | ||
SMART | 67 | 115 | 49 | 2.9E-11 | ||
Pfam | 69 | 111 | 43 | 4.6E-10 | ||
Gene3D | 70 | 144 | 75 | 1.7E-18 | – | |
CDD | 71 | 113 | 43 | 6.91532E-9 | ||
MobiDBLite | 122 | 141 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0038800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…