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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039400 |
| Transcript ID | LotjaGi5g1v0039400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pseudouridine synthase family protein; TAIR: AT1G78910.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|K7MNI8|K7MNI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6657047..6663973) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTCAGAATAGGAACCCTAATTTCCCCCGGCCAATATCTCTCAAGTCTCACCTTCCCATAGCTGCTGCCCAAACCAC CTCCGACCACCGCTCCGCCCATTCCCGACCACCGGCGACCACTCCGGTCTCCGGCCACCGTGTTTCTGGTAATGGACTAG TGTTGTTTATCTTTGTTGGGGACAGATGCTGAATCACGTGAGCAGAAACAATAGCTGGTCATGGCTATCATCAGCAGTGA GGCACTACTCTAGAATTCAGCCCCCAAGGCCTGTTTGTGTTGAACCAGTAATCAGAGTATCTAACAACATTGCCCGCTTG GATGTGCCCAAAGAAGGCCCAAAACCCAGACAGATACTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGGTGCTTC TGGGCAGCAGCGTGATCATGTCACAGCAGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGGTTCCGTTATCGAGT CTCATTTTAGGAAGGGGCTTGTAAGTATCCACTATTTAAATTTGCCAATGAGCTTGTAATCATAGTTATCTTGTTCTTTT TGATACATACTTTATGATATTAAGTAGATAAATTCTTGTCAAGATGAATATTGCATGATTCAATCTTGTTGATTGATATT GGGTTGGTATTGCTTATAAGTAAGATTATATCTATAATCCATTGATTTGATAGATAGGTACCTTTTTTTCTATTGCGGAG GATAAATAACCTACTTAACTCAGCGGTTAGAGTATCGCTTTAAAGTAAAAAAAAAAAACGGAATAAAACTGAAATAGAAG AGTGGTTAAATATAGAAAATTGTAGAGTAAACAGCCATTTTGGTCCCTGAATGTGTTCACTTATGACGGACTGGTCCTTA TATTTTGGAAATGGTTGTTTTTCATCCCTGAATGTGTTGCCGTCGGTCAAGTTCATCCTTGGTTGAGTTTTCCGTTAGTC CCTGAGACGGAAAAGTCCAAGTGTCACAATTTTTGCCACTTTGGCTTGACAACTCAGATCTTGTTATGTCACTTTAGTCA ATTTAGTCCCCCTAAGAAAAAACAAAAACTCTGAGTTCATAAAAAATAAATATAAAAAAAGAAACTCAACATATCCATCA TGTTCATCAATCTTCATCTTCTTCATCATCTTACCCAGAAAAAAGAAAACATATTCATATCCCAAACATCATCTTTTTCA TGTTAATCTCTTTTCCAAACAAAACCCCAAATCTTAAAAAAACCCAACTGGTCAAGATACATGTGCAACAAACAAAGGTT TTAATTGCAGTGCTGACAACATGAGATCGAACCAGTAAACCCGCCTGCCCCATTTGATCACTACCAATTTCTAAGCAAAT TGAGAAATGTAATAATGACTGAAAGAAAACAACATACTGAGATAAAACAACATGCTGAATTCAATTACAGTAGTAACGAC ACTTGTTGATCAAAGAGGATCCATTAGACCATAAGAACAATAGAGTAGTCACTAGTCAGTGCAAGTATCACTAGGTGGCA GATCAAAGTGAGGAGGTGGTATTCAAGCAATTCAAACAAATTAATATGAAAAACACAGGAAGAATAAGCACACAAGGTGA ACAACACAGGAATGCAGAAAATAATTGAAACCGAAAAAGGACTCAAAAACCAAAGACCCATTTTGAAGTTAAAATTATGG AAATGAAGAATAAGAAACGATAGAGCAAGAAATGGAACAGAAAATTAGGGGAACAGAAAACCAGTACCTATGCACTTCCC AATCGATTTCCTCAACAAGCGTGGAATCAACAACAACCACCACCAAACACTCCTCAAAACCCCAATTTTCAACAACACAT TCCTCAAAACCCCAATTTTCCATCACCCATTTCTCAAAACCCCAACTTCCAACGACCCAGTTCTCAAAACCCAACTTTCA GCCACCCCCGAGTCCCAATCGATGGAACAATCAAAACCAGTGGAACCCTCGGACTCAGGGGTTCCTAATCCGCAAAATGG AAACCCTAACCAAGCTCCGGTTCAAGTGCAAGCTCCTATTTGATTTGTATGGCCAAACGAAAGAAGAAAGAAGCATGGTG ATAGTGGTGGTACTTCATAGAGGAAGAAAAAAGCATGGTGATGGTGTGGTGAAGATGATGAAGAGGAGGAAGATAAAGAA GATGAAGAAGAGGAAGAAGAAGCATAAGTGAGGGACGAGTTTGACCGTGTTTTTAGGAGGAAAAAAGAAAATGTGCCAAG TAGGATGCTAGCATGGAAAAAAATGTGCCAGTTGGACTTTTCCGTCTCAGGGACTAACGGAAAACTCAACCAAGGATGAA CTTGACCGACGGCAACACATTCAGGGATGAAAAACAACCATTTCCAAAATATAAGGACCAGTCCGTCATAAGTGAACACA TTCAAGGACCAAAATGGCTGTTTACTCGAAAATTGTAGTATAGGTTGAACTTATTCGATACCAGAATCAATGGTATCGAA TAAGTTCAACCTATACCTTAACGCGCCTTCGCCTAGCGTAGAGGACCCTTGCCGCGACAGGCGAAATCCTGCTATTCGCG GCCTTCCCTTTATGGGATTTTATTTTTGGGAGTCATTCGCGACAGGCCGCGATTCGCGATTGACTACTATGCTTGTAATT CAATTAAACTAAATTAAACATTTGTGGTTCGCAACTTGCTTTTCATATTAAATTATGCTTTAATTTTAACCTTTAACATT AGGGTGGTTGTTTCCAAAATATTAGTTAATATAGTTCCTTTTACATATCTTGTGGTGTCCTGAAAGTACATAGAAGAATT GATTTAGGAAGGAAGTGCATGTCTGATATAGATGATGGTCTACTTAGTTTGCAAGTTGGAAGACAATAGTAGGATCTACA TTTTCCGTGTCACATAAGATTTATATCATTTTAAAGGGTCAGATATGAATGTGGTGATTGAAAAATGTACTTACAGACTG TTGATAATTTCTTATTTTAGGTGCAAATGGAGGACCTGATTGCTGCCGACTCTTTCACTCAGAAGGATGAGCGGATGAAA CCTATGCGAAAGGTATTTCATGTTTACATGTACCATTTTATTGGACCAGTTTCTATTACAAGCTGTGCTTTGGATGCGTT ACTATTCGTCTTTGTGTTTTTCTTCTTCTTAAGAAAAAGTGAATTACTTATAATATGTTTTAGGTGTAATAATACTACAA CTATGCAGCTTAACTGCAGATGAGACCTAATGACGTAATGAAGCCTGGAGCCAGACTTCACGTCCCTGTATCAATGGCTG AGACTAGGATTTCGAAAAGATATGATGCAATACCAAGTGGAACACTGTATCCAAATGCTGATGAAATTAAGTATCTGCAA AGGCTTGTGATATACAAGGCATGCCTTTCTTCTAAAGCTATATTTATTTTATTTTCTAGTTTGCTGTTACTTATTTTTCA GATGCACTGCAATATATTTATTTATTGCATATTGTGTTAAAATGTATTGCTTTCAGGACTCTGCTATTATTGTGCTGAAT AAACCTCCAAAATTGCCTGTCAAGGTTTGAATGCCTATTCTTTCACATTTACACAAATTCACTTTGAGTTTGAGTTTGTT CTGGGATTTGATTTCCTGCCTGTTGTCTTGTAGGGTAATCTTCCAGTTCATAATAGCATGGATGCATTGGCTGCTGCAGC ACTGTCCTATGATTATGATGAGGGTCCTAAACTGGTAAACTACTCTTATACATCATTACAATGAAATAATTTGGTTTATA CATAAAAGTAAATGAATCATCATCATGCAGCAAACAGATATATCTGTTTATTTAGATAGGCGGGCCCCACTTTTTTTACA AAATCTTAAAAGATTAAAATAATTGGTCACTCTGAAGGTTTTGGTCAGTTTCATTGCTTCTTGTCCTGGTCTCTCGTCAG ACGAAAGACCTTGAGGTCTGTACATTCTAATATCTTGTAGGAATCTGGATGGCTTACCTTTCCTGACAATTGAATCATCT GTTAAGATTTTTTCTCTCAATGTTTTGCTTTAATTATCCTTACATACCATAAGATTTGTCTAAGAGCATGGAGATAGGTA AAGCAATTAGGCTATATAATATTCCCATTGAAGTTTGGAAGTGCCTCAGAGAGAATGGTATAACCTGGCTCTTAAATTTG TTCATTGAGATAATCAGATCTAAAATGATGGGTGGAGAAGCACTTTGATTATCATTTATAAGAACAAGGAAGATACCATA AGTTGTTGAAACATAGGGCTTAAGCTCATTACTCATCTCTAAACTAGAACTGTTGATATTAACAAAATGAACCTGTCTGA AACCTTTTTGTTAGAGGGTTTCTTTAATCATGGTCTGTTTTCATAATAAATACCAAAAAATGCTATTTTGTTTTCATTTT TTTTTCACTCTCTTCTGATGTTCTCTATCCTAATTTCATTTGTGAATCGGAAGCTGTTATAGAAATGGTTGATGCTTATT GATCATACATGACAGCTTAATTCATTTGCTGGATTTTCCAGGTTCACCGTCTTGACAAAGAGAGTAGTGGCATCCTATTA TTTGGGAGAACAAAAGATAGCGTATCTCATCTTCAATGGTTATTCAGTAACATTAACAGCGCAAAATCTTCTTGTAAGGT GCCTTATCTGCATGAAGTAGTGAACTTCTATTTTCTGTAAATAGTGTTTTACTTGGTGAAACACATACAGTCTTTTAAAA CACTCAACCAAAAGTTTTGTATTTCACTGTTGACTTACATTCATTGGGCTACTTTAGGCTTGGAATGATGCATGTGAAGC TACATATCAGAGGTATTGGGCATTGGTCATAGGGACTCCCAATGAGAAGGAAGGCATAATTCACGCTCCTCTTTCTAAGG TTTTCATTCTTTCTCATTTTAGTTTCATCTCTGTGCGTACATCCAGTGATAACTGATAACAAGTCTAATTTGATTGCTAT CTTCTAGTGTGTTAATTGATTATGTTTGCATGCCGTCTTATTTCAGGTACTTCTGAATGATGGGAAGACTGAGAGGGTCA TGCTAGCTCATCATTCAACTATAGAACCTCGCCAAGAGGCTGTGACTGAGTATCGAGTGCTTGGTCCAAAGATAAATGGG TGCTCATGGGTTGAGCTGCGTCCACTTACTTCCCGGAAGCATCAGGTATCTTGGATGCTGCTTTTATTCTACATTCAACT GAAATGTGTTGGTAAAAAGAGAGTAGACATAATTTATCTTTTTATATCTTTTGAAGTCTAATTAGGATCTTCTTTTTTAA TTATTGTAGAATATCTTTAGAATATGTTGGGTAATCTAATCAGAATTTGGGTTAGGCATAACTCTACACCAAAAGCTTGC TCTACCCTTTATACGGGTTGTCTCCAATTAATGGATTTAGTATAGGCTCTGATATCATATTAGAATTTGCATTACGCCTA ACTCTACTCCAAAAACTAGCTTAGAAGTGAGGGTTGTTCTACCCTATATGAACACTTATTTGACCATATCTCATTATCTC TAGTGAATGTGAGACTTATCAATAAATCCCTGACAGGGGGTGGCTGACTGGGTTGACCTTCCGCACCTACAAAGCTAGAA CTTGGCTTTGATTATAGGAAACCCGTTGGTAGCTAAAATAAATACAATCTCACTCTAAAATCTCATTGAGGTTGAGTGCC TTCCATGTGGCCTTAACCTTGCCTGAGGACAAGACTTACCCTTATCTAAACTTTAATCCACGTAGAAAATGGAATATGTT GACTTGTTGAGTAATTATTTAGCTATTGTTAAGGTCCCACGTTGACTAGACATATGTACAAAATAGTCTTTATATAGGAT AGAACCTTCACTCCTAAGTTGGTTTTTGGAATAGAGTTAGCCTAATCCAAATTTTAAGTTGGCATCAGAGCCTTTCATAG GTCGTTTATATAATATATTACTGTTCTCGACCTTTTTTTCTCTTTCCCATTTCATCCGCAACCTATAATTCTTATCATTA ACAATATCTAAAAGATGCCTCCTGTATCCTTTTCTTGCTGTCTTTCATTGAAGATGAACTGATTCCAGTTCCTACTGTCT GATAAAATAATGAAATCGTCATCTGATTGCTTTGATATAATTGTAGTTTTGCTGAGTAAAAGCAACTTACTTATTCCTTG CTTCATGTGATTTCTGCTCCCCTTTTCCAGTTGCGTGTCCATTGTGCTGAAGCACTCGGCACACCAATAGTAGGTGACTA TAAGTATGGCTGGTTTGTGCATAACCGATGGAAACAAATGCCGAGAGTCGATATTGAGCCAACAACTGGAAAACCATACA GGATGAGGAGGCCAGAAGGCCTAGAAGTTCAGAAGGGAAGCGTTTTGTCCAAGGTCCCTCTACTGCATCTTCACTGCAGA GAACTTGCGCTCCCCAACATTTCTAAGTTTCTGCATGTTTTTGAAAAGAGCCCTGAAGAACTGCACCCTTCACTTAGGGA GCAGCCTGATGTTCTTCGCTTTGTTGCAACAATGCCTTCACATATGAGGATTAGTTGGAATCTTATGTCTTCGTATTTAG TTTGAGAAAAAGTGCAATATTGAATTGGTTGATTAACTATGGGAAAAGAAATAGATGTCATTAAGTTTAGGGAGGTCTGT TATTTTTTGGCATTTAAGATTTCCATTACTACAGCATAAGAGGTTTAGGTCTAATTAAATTTTAGTATTGGCATATGATT GAAAAAATCAAGAACCTGTTTCCTTTGTATTCTCATTTTCTATCCCGCTAATTAAAATAATTAACATTTCAGTTACCTTA GGAAAGTTTTTTTTGGAAGCACTAGCAAAGTTATTATTTGAGAGATTTATGTTTTTCATAATGTATTGTTTTTAAGCTGG AAGGATAGAGAAACGAGACGTACAATTAAATTCATGATGGAAACTGG
CDS sequence (LotjaGi5g1v0039400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAATCACGTGAGCAGAAACAATAGCTGGTCATGGCTATCATCAGCAGTGAGGCACTACTCTAGAATTCAGCCCCC AAGGCCTGTTTGTGTTGAACCAGTAATCAGAGTATCTAACAACATTGCCCGCTTGGATGTGCCCAAAGAAGGCCCAAAAC CCAGACAGATACTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGGTGCTTCTGGGCAGCAGCGTGATCATGTCACA GCAGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGGTTCCGTTATCGAGTCTCATTTTAGGAAGGGGCTTGTGCA AATGGAGGACCTGATTGCTGCCGACTCTTTCACTCAGAAGGATGAGCGGATGAAACCTATGCGAAAGATGAGACCTAATG ACGTAATGAAGCCTGGAGCCAGACTTCACGTCCCTGTATCAATGGCTGAGACTAGGATTTCGAAAAGATATGATGCAATA CCAAGTGGAACACTGTATCCAAATGCTGATGAAATTAAGTATCTGCAAAGGCTTGTGATATACAAGGACTCTGCTATTAT TGTGCTGAATAAACCTCCAAAATTGCCTGTCAAGGGTAATCTTCCAGTTCATAATAGCATGGATGCATTGGCTGCTGCAG CACTGTCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAAAGAGAGTAGTGGCATCCTATTATTTGGG AGAACAAAAGATAGCGTATCTCATCTTCAATGGTTATTCAGTAACATTAACAGCGCAAAATCTTCTTGTAAGGCTTGGAA TGATGCATGTGAAGCTACATATCAGAGGTATTGGGCATTGGTCATAGGGACTCCCAATGAGAAGGAAGGCATAATTCACG CTCCTCTTTCTAAGGTACTTCTGAATGATGGGAAGACTGAGAGGGTCATGCTAGCTCATCATTCAACTATAGAACCTCGC CAAGAGGCTGTGACTGAGTATCGAGTGCTTGGTCCAAAGATAAATGGGTGCTCATGGGTTGAGCTGCGTCCACTTACTTC CCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTCGGCACACCAATAGTAGGTGACTATAAGTATGGCTGGTTTG TGCATAACCGATGGAAACAAATGCCGAGAGTCGATATTGAGCCAACAACTGGAAAACCATACAGGATGAGGAGGCCAGAA GGCCTAGAAGTTCAGAAGGGAAGCGTTTTGTCCAAGGTCCCTCTACTGCATCTTCACTGCAGAGAACTTGCGCTCCCCAA CATTTCTAAGTTTCTGCATGTTTTTGAAAAGAGCCCTGAAGAACTGCACCCTTCACTTAGGGAGCAGCCTGATGTTCTTC GCTTTGTTGCAACAATGCCTTCACATATGAGGATTAGTTGGAATCTTATGTCTTCGTATTTAGTTTGA
Protein sequence (LotjaGi5g1v0039400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNHVSRNNSWSWLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGASGQQRDHVT AVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAI PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDKESSGILLFG RTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPR QEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRRPE GLEVQKGSVLSKVPLLHLHCRELALPNISKFLHVFEKSPEELHPSLREQPDVLRFVATMPSHMRISWNLMSSYLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 475 | 456 | 5.0E-241 | – | |
| PANTHER | 20 | 475 | 456 | 5.0E-241 | – | |
| Gene3D | 166 | 436 | 271 | 5.0E-48 | – | |
| SUPERFAMILY | 171 | 430 | 260 | 4.73E-42 | ||
| CDD | 186 | 382 | 197 | 1.23565E-46 | ||
| Pfam | 186 | 357 | 172 | 3.1E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi5g1v0039400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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