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LotjaGi5g1v0039400.4

Overview

Field Value
Gene ID LotjaGi5g1v0039400
Transcript ID LotjaGi5g1v0039400.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pseudouridine synthase family protein; TAIR: AT1G78910.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|K7MNI8|K7MNI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:6657409..6663788) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTGAATCACGTGAGCAGAAACAATAGCTGGTCATGGCTATCATCAGCAGTGAGGCACTACTCTAGAATTCAGCCCCC AAGGCCTGTTTGTGTTGAACCAGTAATCAGAGTATCTAACAACATTGCCCGCTTGGATGTGCCCAAAGAAGGCCCAAAAC CCAGACAGATACTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGGTGCTTCTGGGCAGCAGCGTGATCATGTCACA GCAGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGGTTCCGTTATCGAGTCTCATTTTAGGAAGGGGCTTGTAAG TATCCACTATTTAAATTTGCCAATGAGCTTGTAATCATAGTTATCTTGTTCTTTTTGATACATACTTTATGATATTAAGT AGATAAATTCTTGTCAAGATGAATATTGCATGATTCAATCTTGTTGATTGATATTGGGTTGGTATTGCTTATAAGTAAGA TTATATCTATAATCCATTGATTTGATAGATAGGTACCTTTTTTTCTATTGCGGAGGATAAATAACCTACTTAACTCAGCG GTTAGAGTATCGCTTTAAAGTAAAAAAAAAAAACGGAATAAAACTGAAATAGAAGAGTGGTTAAATATAGAAAATTGTAG AGTAAACAGCCATTTTGGTCCCTGAATGTGTTCACTTATGACGGACTGGTCCTTATATTTTGGAAATGGTTGTTTTTCAT CCCTGAATGTGTTGCCGTCGGTCAAGTTCATCCTTGGTTGAGTTTTCCGTTAGTCCCTGAGACGGAAAAGTCCAAGTGTC ACAATTTTTGCCACTTTGGCTTGACAACTCAGATCTTGTTATGTCACTTTAGTCAATTTAGTCCCCCTAAGAAAAAACAA AAACTCTGAGTTCATAAAAAATAAATATAAAAAAAGAAACTCAACATATCCATCATGTTCATCAATCTTCATCTTCTTCA TCATCTTACCCAGAAAAAAGAAAACATATTCATATCCCAAACATCATCTTTTTCATGTTAATCTCTTTTCCAAACAAAAC CCCAAATCTTAAAAAAACCCAACTGGTCAAGATACATGTGCAACAAACAAAGGTTTTAATTGCAGTGCTGACAACATGAG ATCGAACCAGTAAACCCGCCTGCCCCATTTGATCACTACCAATTTCTAAGCAAATTGAGAAATGTAATAATGACTGAAAG AAAACAACATACTGAGATAAAACAACATGCTGAATTCAATTACAGTAGTAACGACACTTGTTGATCAAAGAGGATCCATT AGACCATAAGAACAATAGAGTAGTCACTAGTCAGTGCAAGTATCACTAGGTGGCAGATCAAAGTGAGGAGGTGGTATTCA AGCAATTCAAACAAATTAATATGAAAAACACAGGAAGAATAAGCACACAAGGTGAACAACACAGGAATGCAGAAAATAAT TGAAACCGAAAAAGGACTCAAAAACCAAAGACCCATTTTGAAGTTAAAATTATGGAAATGAAGAATAAGAAACGATAGAG CAAGAAATGGAACAGAAAATTAGGGGAACAGAAAACCAGTACCTATGCACTTCCCAATCGATTTCCTCAACAAGCGTGGA ATCAACAACAACCACCACCAAACACTCCTCAAAACCCCAATTTTCAACAACACATTCCTCAAAACCCCAATTTTCCATCA CCCATTTCTCAAAACCCCAACTTCCAACGACCCAGTTCTCAAAACCCAACTTTCAGCCACCCCCGAGTCCCAATCGATGG AACAATCAAAACCAGTGGAACCCTCGGACTCAGGGGTTCCTAATCCGCAAAATGGAAACCCTAACCAAGCTCCGGTTCAA GTGCAAGCTCCTATTTGATTTGTATGGCCAAACGAAAGAAGAAAGAAGCATGGTGATAGTGGTGGTACTTCATAGAGGAA GAAAAAAGCATGGTGATGGTGTGGTGAAGATGATGAAGAGGAGGAAGATAAAGAAGATGAAGAAGAGGAAGAAGAAGCAT AAGTGAGGGACGAGTTTGACCGTGTTTTTAGGAGGAAAAAAGAAAATGTGCCAAGTAGGATGCTAGCATGGAAAAAAATG TGCCAGTTGGACTTTTCCGTCTCAGGGACTAACGGAAAACTCAACCAAGGATGAACTTGACCGACGGCAACACATTCAGG GATGAAAAACAACCATTTCCAAAATATAAGGACCAGTCCGTCATAAGTGAACACATTCAAGGACCAAAATGGCTGTTTAC TCGAAAATTGTAGTATAGGTTGAACTTATTCGATACCAGAATCAATGGTATCGAATAAGTTCAACCTATACCTTAACGCG CCTTCGCCTAGCGTAGAGGACCCTTGCCGCGACAGGCGAAATCCTGCTATTCGCGGCCTTCCCTTTATGGGATTTTATTT TTGGGAGTCATTCGCGACAGGCCGCGATTCGCGATTGACTACTATGCTTGTAATTCAATTAAACTAAATTAAACATTTGT GGTTCGCAACTTGCTTTTCATATTAAATTATGCTTTAATTTTAACCTTTAACATTAGGGTGGTTGTTTCCAAAATATTAG TTAATATAGTTCCTTTTACATATCTTGTGGTGTCCTGAAAGTACATAGAAGAATTGATTTAGGAAGGAAGTGCATGTCTG ATATAGATGATGGTCTACTTAGTTTGCAAGTTGGAAGACAATAGTAGGATCTACATTTTCCGTGTCACATAAGATTTATA TCATTTTAAAGGGTCAGATATGAATGTGGTGATTGAAAAATGTACTTACAGACTGTTGATAATTTCTTATTTTAGGTGCA AATGGAGGACCTGATTGCTGCCGACTCTTTCACTCAGAAGGATGAGCGGATGAAACCTATGCGAAAGGTATTTCATGTTT ACATGTACCATTTTATTGGACCAGTTTCTATTACAAGCTGTGCTTTGGATGCGTTACTATTCGTCTTTGTGTTTTTCTTC TTCTTAAGAAAAAGTGAATTACTTATAATATGTTTTAGGTGTAATAATACTACAACTATGCAGCTTAACTGCAGATGAGA CCTAATGACGTAATGAAGCCTGGAGCCAGACTTCACGTCCCTGTATCAATGGCTGAGACTAGGATTTCGAAAAGATATGA TGCAATACCAAGTGGAACACTGTATCCAAATGCTGATGAAATTAAGTATCTGCAAAGGCTTGTGATATACAAGGCATGCC TTTCTTCTAAAGCTATATTTATTTTATTTTCTAGTTTGCTGTTACTTATTTTTCAGATGCACTGCAATATATTTATTTAT TGCATATTGTGTTAAAATGTATTGCTTTCAGGACTCTGCTATTATTGTGCTGAATAAACCTCCAAAATTGCCTGTCAAGG TTTGAATGCCTATTCTTTCACATTTACACAAATTCACTTTGAGTTTGAGTTTGTTCTGGGATTTGATTTCCTGCCTGTTG TCTTGTAGGGTAATCTTCCAGTTCATAATAGCATGGATGCATTGGCTGCTGCAGCACTGTCCTATGATTATGATGAGGGT CCTAAACTGGTAAACTACTCTTATACATCATTACAATGAAATAATTTGGTTTATACATAAAAGTAAATGAATCATCATCA TGCAGCAAACAGATATATCTGTTTATTTAGATAGGCGGGCCCCACTTTTTTTACAAAATCTTAAAAGATTAAAATAATTG GTCACTCTGAAGGTTTTGGTCAGTTTCATTGCTTCTTGTCCTGGTCTCTCGTCAGACGAAAGACCTTGAGGTCTGTACAT TCTAATATCTTGTAGGAATCTGGATGGCTTACCTTTCCTGACAATTGAATCATCTGTTAAGATTTTTTCTCTCAATGTTT TGCTTTAATTATCCTTACATACCATAAGATTTGTCTAAGAGCATGGAGATAGGTAAAGCAATTAGGCTATATAATATTCC CATTGAAGTTTGGAAGTGCCTCAGAGAGAATGGTATAACCTGGCTCTTAAATTTGTTCATTGAGATAATCAGATCTAAAA TGATGGGTGGAGAAGCACTTTGATTATCATTTATAAGAACAAGGAAGATACCATAAGTTGTTGAAACATAGGGCTTAAGC TCATTACTCATCTCTAAACTAGAACTGTTGATATTAACAAAATGAACCTGTCTGAAACCTTTTTGTTAGAGGGTTTCTTT AATCATGGTCTGTTTTCATAATAAATACCAAAAAATGCTATTTTGTTTTCATTTTTTTTTCACTCTCTTCTGATGTTCTC TATCCTAATTTCATTTGTGAATCGGAAGCTGTTATAGAAATGGTTGATGCTTATTGATCATACATGACAGCTTAATTCAT TTGCTGGATTTTCCAGGTTCACCGTCTTGACAAAGAGAGTAGTGGCATCCTATTATTTGGGAGAACAAAAGATAGCGTAT CTCATCTTCAATGGTTATTCAGTAACATTAACAGCGCAAAATCTTCTTGTAAGGTGCCTTATCTGCATGAAGTAGTGAAC TTCTATTTTCTGTAAATAGTGTTTTACTTGGTGAAACACATACAGTCTTTTAAAACACTCAACCAAAAGTTTTGTATTTC ACTGTTGACTTACATTCATTGGGCTACTTTAGGCTTGGAATGATGCATGTGAAGCTACATATCAGAGGTATTGGGCATTG GTCATAGGGACTCCCAATGAGAAGGAAGGCATAATTCACGCTCCTCTTTCTAAGGTTTTCATTCTTTCTCATTTTAGTTT CATCTCTGTGCGTACATCCAGTGATAACTGATAACAAGTCTAATTTGATTGCTATCTTCTAGTGTGTTAATTGATTATGT TTGCATGCCGTCTTATTTCAGGTACTTCTGAATGATGGGAAGACTGAGAGGGTCATGCTAGCTCATCATTCAACTATAGA ACCTCGCCAAGAGGCTGTGACTGAGTATCGAGTGCTTGGTCCAAAGATAAATGGGTGCTCATGGGTTGAGCTGCGTCCAC TTACTTCCCGGAAGCATCAGGTATCTTGGATGCTGCTTTTATTCTACATTCAACTGAAATGTGTTGGTAAAAAGAGAGTA GACATAATTTATCTTTTTATATCTTTTGAAGTCTAATTAGGATCTTCTTTTTTAATTATTGTAGAATATCTTTAGAATAT GTTGGGTAATCTAATCAGAATTTGGGTTAGGCATAACTCTACACCAAAAGCTTGCTCTACCCTTTATACGGGTTGTCTCC AATTAATGGATTTAGTATAGGCTCTGATATCATATTAGAATTTGCATTACGCCTAACTCTACTCCAAAAACTAGCTTAGA AGTGAGGGTTGTTCTACCCTATATGAACACTTATTTGACCATATCTCATTATCTCTAGTGAATGTGAGACTTATCAATAA ATCCCTGACAGGGGGTGGCTGACTGGGTTGACCTTCCGCACCTACAAAGCTAGAACTTGGCTTTGATTATAGGAAACCCG TTGGTAGCTAAAATAAATACAATCTCACTCTAAAATCTCATTGAGGTTGAGTGCCTTCCATGTGGCCTTAACCTTGCCTG AGGACAAGACTTACCCTTATCTAAACTTTAATCCACGTAGAAAATGGAATATGTTGACTTGTTGAGTAATTATTTAGCTA TTGTTAAGGTCCCACGTTGACTAGACATATGTACAAAATAGTCTTTATATAGGATAGAACCTTCACTCCTAAGTTGGTTT TTGGAATAGAGTTAGCCTAATCCAAATTTTAAGTTGGCATCAGAGCCTTTCATAGGTCGTTTATATAATATATTACTGTT CTCGACCTTTTTTTCTCTTTCCCATTTCATCCGCAACCTATAATTCTTATCATTAACAATATCTAAAAGATGCCTCCTGT ATCCTTTTCTTGCTGTCTTTCATTGAAGATGAACTGATTCCAGTTCCTACTGTCTGATAAAATAATGAAATCGTCATCTG ATTGCTTTGATATAATTGTAGTTTTGCTGAGTAAAAGCAACTTACTTATTCCTTGCTTCATGTGATTTCTGCTCCCCTTT TCCAGTTGCGTGTCCATTGTGCTGAAGCACTCGGCACACCAATAGTAGGTGACTATAAGTATGGCTGGTTTGTGCATAAC CGATGGAAACAAATGCCGAGAGTCGATATTGAGCCAACAACTGGAAAACCATACAGGATGAGGAGGCCAGAAGGCCTAGA AGTTCAGAAGGGAAGCGTTTTGTCCAAGGTCCCTCTACTGCATCTTCACTGCAGAGAACTTGCGCTCCCCAACATTTCTA AGTTTCTGCATGTTTTTGAAAAGAGCCCTGAAGAACTGCACCCTTCACTTAGGGAGCAGCCTGATGTTCTTCGCTTTGTT GCAACAATGCCTTCACATATGAGGATTAGTTGGAATCTTATGTCTTCGTATTTAGTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0039400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGAATCACGTGAGCAGAAACAATAGCTGGTCATGGCTATCATCAGCAGTGAGGCACTACTCTAGAATTCAGCCCCC AAGGCCTGTTTGTGTTGAACCAGTAATCAGAGTATCTAACAACATTGCCCGCTTGGATGTGCCCAAAGAAGGCCCAAAAC CCAGACAGATACTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGGTGCTTCTGGGCAGCAGCGTGATCATGTCACA GCAGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGGTTCCGTTATCGAGTCTCATTTTAGGAAGGGGCTTGTGCA AATGGAGGACCTGATTGCTGCCGACTCTTTCACTCAGAAGGATGAGCGGATGAAACCTATGCGAAAGATGAGACCTAATG ACGTAATGAAGCCTGGAGCCAGACTTCACGTCCCTGTATCAATGGCTGAGACTAGGATTTCGAAAAGATATGATGCAATA CCAAGTGGAACACTGTATCCAAATGCTGATGAAATTAAGTATCTGCAAAGGCTTGTGATATACAAGGACTCTGCTATTAT TGTGCTGAATAAACCTCCAAAATTGCCTGTCAAGGGTAATCTTCCAGTTCATAATAGCATGGATGCATTGGCTGCTGCAG CACTGTCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAAAGAGAGTAGTGGCATCCTATTATTTGGG AGAACAAAAGATAGCGTATCTCATCTTCAATGGTTATTCAGTAACATTAACAGCGCAAAATCTTCTTGCTTGGAATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0039400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLNHVSRNNSWSWLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGASGQQRDHVT AVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAI PSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDKESSGILLFG RTKDSVSHLQWLFSNINSAKSSCLE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21600
20 260 241 1.4E-116 –
PANTHER
PTHR21600:SF53
20 260 241 1.4E-116 –
SUPERFAMILY
SSF55120
171 257 87 3.29E-16
IPR020103
Gene3D
G3DSA:3.30.2350.10
176 261 86 4.3E-16 –
Pfam
PF00849
186 255 70 2.2E-10
IPR006145
CDD
cd02869
186 255 70 4.15013E-15
IPR006145

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0039400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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