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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039500 |
| Transcript ID | LotjaGi5g1v0039500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT2G36890.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SJL7|RAX2_ARATH Transcription factor RAX2; TrEMBL-Plants: tr|A0A151T0N5|A0A151T0N5_CAJCA Transcription factor RAX3; Found in the gene: LotjaGi5g1v0039500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6674526..6676481) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCTCTATTCAGTTCGAGTACTCGAGAGTGGCCATGGGAAGATCTCCTTGTTGTGATAAAGATAATGTTAAGAGAGG GCCATGGTCTCCAGAAGAAGATGCAATTCTCAAGAGTTATGTTGAGACTCATGGCACTGTTGGAAATTGGATTGCATTGC CAAGAAAAGCTGGTCCGTTTCTCTCTTCCCATTGTATATATGTAATTGCATATATAAATTTGAATTTCTATACCCATTTT CATTAACCAATTTGTTGATCCTCACTCCTGATTTTTCTTCTAGTTGAAGGGCATGAAAATGATGAGATGAAAAAATTTCT TGAGAAGGGAAAATGATGAATCTTTTCCTCTTTTTTTTTTTTGATTTTCCTCGTACAACGTCATCTCCTCTAAACATTTT ATTATTTATTTTGTTTCACTTAAATTTGGGCTTTGGTGTTGTTTATACATAATTTTTTCTGCATTGAAAGTCTTATCTGA TCTCACTAGTTGAGGTCGACTATAGATCACGATTTTTCTCAGTCGGAAGGCCTAACACAATCTTTCTATTTTATCCGTAC TTTTTTTCCTGATTACCCATTATACATAAACATTTTACTTCCGGAAATTAAAATTCACTCAACTATACATGAAGGAAGCT CATTTGTGCTTGTTTGTTAGCTAATCTCACATTTTACCATTTTAATTTATTCAAAGAAAATTGTGTGTTTAGCTAACATG AAATCATGAACTATTTGCTTTTGCTCTTAATTTTTCTTTCTCTTTTTTAATTGAAGTTTCACGTTATAAATGATATACAT TATATGAAGGCCTTAGGCGGTGTGGGAAGAGTTGTCGTCTAAGGTGGCTCAATTATCTCAGGCCAGACATCAAACATGGA GGCTTCACTGAAGAAGAGGACAACATCATTTGTACCCTCTATGCTCAAATAGGAAGCAGGCAAGTATCTCCAAATCGTTG CGTTTGGATCATATTTTCTTTACTTAGCATCAATTATGACACCCCATAAGCTACAAATCACATAAAATTATACCAATGAT TGAATTTAATTTTAGAATCAATTGTAGAAGAATTTTATAACATGTACATAGTGTTATAAGTTTATGCACAATTCTTGTAT CAGAAGTTTGGACTAATAATTGTATTCTTATGAAATAATTTTGTGTTCTTGTCTAGATGGTCTGTAATAGCTTCTAATCT TTCTGGGAGAACAGACAATGATGTGAAAAACCATTGGAACACAAAACTAAAGAAGAAGATCCTTGCAGGAGAAATTAACC TCAAAGCACTGAAAGAAAATGACACCTTTCTTCCATCAACAACTCCATCACTGATTCAAGATGTCATGCCTCAAAATTTA GATTACCCTGCTTCACAAATTCAAAATCCTCCACTGCCTTCAGTGCTTCAAATAGATAACAACAATGGTTATGCTAGTTC TGGATTCAACATGATTCATGAACAAAACATGGGTTCTGATCTCATGGATGTTGTCTCAAACATTGGTTCAAGTTCAGGGA ACTACAATCCCATGGTGTCTTTTTTATCTCAAGAAGGTCCAAGCAACATTTCAGATTCTTCTACCAACAAGTGTCTGTCT CTGCCACCAGAACATGACGGTGATGTGGGAATGATGGATTTTGGCTTTGAATTTCCTTATGATCCTACAAACTACCATGG TAGAGTTGGTGAATTCACACCAAGTAATTACTACTATTCTGAGTGGGCTGATTTGAGCAATGATGACATTAAGCCACATT GACTGAATCAAAATGTTGTCTAGTTCTAGTAAGACATGAACCATCAAATTCTGTAAAAGTAAAACTGCATATGGGAATTA AGGAAAAGGGACATGTGAAGGGGAGAGCAATAGCTTATATATTTCTAGTTTGTTTAGTGTAATTTAGTGCTTGTGTGTCA TGTTCATAGATAAGAGCTACATAGTTTAGGTCGAAG
CDS sequence (LotjaGi5g1v0039500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGATCTCCTTGTTGTGATAAAGATAATGTTAAGAGAGGGCCATGGTCTCCAGAAGAAGATGCAATTCTCAAGAG TTATGTTGAGACTCATGGCACTGTTGGAAATTGGATTGCATTGCCAAGAAAAGCTGGCCTTAGGCGGTGTGGGAAGAGTT GTCGTCTAAGGTGGCTCAATTATCTCAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAAGAGGACAACATCATTTGT ACCCTCTATGCTCAAATAGGAAGCAGATGGTCTGTAATAGCTTCTAATCTTTCTGGGAGAACAGACAATGATGTGAAAAA CCATTGGAACACAAAACTAAAGAAGAAGATCCTTGCAGGAGAAATTAACCTCAAAGCACTGAAAGAAAATGACACCTTTC TTCCATCAACAACTCCATCACTGATTCAAGATGTCATGCCTCAAAATTTAGATTACCCTGCTTCACAAATTCAAAATCCT CCACTGCCTTCAGTGCTTCAAATAGATAACAACAATGGTTATGCTAGTTCTGGATTCAACATGATTCATGAACAAAACAT GGGTTCTGATCTCATGGATGTTGTCTCAAACATTGGTTCAAGTTCAGGGAACTACAATCCCATGGTGTCTTTTTTATCTC AAGAAGGTCCAAGCAACATTTCAGATTCTTCTACCAACAAGTGTCTGTCTCTGCCACCAGAACATGACGGTGATGTGGGA ATGATGGATTTTGGCTTTGAATTTCCTTATGATCCTACAAACTACCATGGTAGAGTTGGTGAATTCACACCAAGTAATTA CTACTATTCTGAGTGGGCTGATTTGAGCAATGATGACATTAAGCCACATTGA
Protein sequence (LotjaGi5g1v0039500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCDKDNVKRGPWSPEEDAILKSYVETHGTVGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIIC TLYAQIGSRWSVIASNLSGRTDNDVKNHWNTKLKKKILAGEINLKALKENDTFLPSTTPSLIQDVMPQNLDYPASQIQNP PLPSVLQIDNNNGYASSGFNMIHEQNMGSDLMDVVSNIGSSSGNYNPMVSFLSQEGPSNISDSSTNKCLSLPPEHDGDVG MMDFGFEFPYDPTNYHGRVGEFTPSNYYYSEWADLSNDDIKPH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 196 | 196 | 1.6E-82 | ||
| PANTHER | 1 | 196 | 196 | 1.6E-82 | – | |
| Gene3D | 7 | 68 | 62 | 1.2E-19 | – | |
| ProSiteProfiles | 9 | 62 | 54 | 14.821 | ||
| SUPERFAMILY | 11 | 109 | 99 | 8.07E-27 | ||
| SMART | 13 | 64 | 52 | 1.1E-11 | ||
| Pfam | 14 | 62 | 49 | 1.1E-13 | ||
| CDD | 16 | 62 | 47 | 1.04915E-9 | ||
| ProSiteProfiles | 63 | 117 | 55 | 21.954 | ||
| SMART | 67 | 115 | 49 | 2.3E-12 | ||
| Pfam | 69 | 111 | 43 | 4.4E-11 | ||
| Gene3D | 69 | 133 | 65 | 2.0E-18 | – | |
| CDD | 71 | 113 | 43 | 5.32884E-10 | ||
| Coils | 110 | 130 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0039500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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