Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0040800 |
| Transcript ID | LotjaGi5g1v0040800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P36294|NCAP_TSWVS Nucleoprotein; TrEMBL-Plants: tr|A0A151TNK9|A0A151TNK9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0040800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6861262..6866038) extracted from Lotus japonicus Gifu genome v1.2.
TGTTTTTGGGGTCAATTCCAATACTGGTTCAAGCATGGTGTCCTAGTCCAGTTCCTTTTTTGTTAGTCAAAAGGTCAGTA GTCCAGTTCAAAAATATATTAGCAACTTTGAAAATGGCTTGCGTTGTTTGTATGGGCTGTTGTTTTCCTTTGGTCCCATG GACTTCCTATACATGCAAGATTGAAGTGAACTGCTCTACGCAAAATTGCAACCCAATGTTTTAAAAGGACAGGTGGTTAC AACGCACTAATTTGGGATCCAAATGTTCAATCGTACATGCTTAATTGCATTTTTCATTCCTGATTTTAGCTTTTGTGCAA TTTGAAATTACGAAATAAAATAAAATAGCAATTGAAACTACGAAATAAGGATTACAGACAAAAGGTGCAAAGCATAAAGT GTTTGTGAAAATACTAAAGATCAAGGACCAGTATAGCATAGAAGCAAAAGTGCAAGGACTCATTTGTAATAGTTAGTAGT TAGTTCATTCCAACTGTCAAAGTTTGTTAGGATAGTTATAACTACTGTTAGTTAAGAGTTTACTATATAAATAGAGTTTA GCATAAACACTTTGTATTCTGAATATTCATTTTCAATAGATTCAATACAATTTCAGCTTCTTCTTCTTCCTTGAGCTTTC TCTGAAAGCTAGGTTGAGATTTCTATTATCGTATCAAGAGCATAATCATCACAAAGCTTCTGCAATCTGCAACAATTGTG AATCGTCAGAATCAGAATCAAAACGTTGTTCCTCATGTGGTGCTTGATCCAACGCAGAATCCAACATCACCGTACTACAT CCATTCGAGCGATAATCCTTCTGCAACAAGGGTGAATCCACCGTTGAATGGCAAGAACTACAACGCTTGGGCGAGGTCGA TGAAGCGCGCGTTGGTTTCAAAGAACAAGTTTCGTTTCGTTAGCGGTGAAATTCCAGTTCCTACTGCTACAGATGCAAAT TTTGATGCCTGGGATCGCTGCAACAGCCTAATCCACTCATGGATTCTCAATTCGGTAACAACTTCTATAGCAAATAGCAT TGTTTTTGTTGAAAATGCTTGTGATGCTTGGAGAGATTTGAGAGATCGGTTTTCGCAAGGAGATCTTGTTAGGATTGCTG AACTGCATAATGAAATCAGTAATTTGAAACAAAATTCAAAGTCTGTGAATGAGTACTATAATGAATTGAAGATACTCTTA GAGGAATTGGATCATTATCGCTCAATTCCACAATGCAAATGCACTGTTCCTTGTAGATGTGATGCAATTGAGAGTGTGAA ACTGTTTAGAGAACAGGATAATGCTATCAGGTTCCTTTTAGGGTTGAATGATAGTTTTGGAGTAGTAAAATCGCAGATTT TGATGAGCCATCCTTTGCCACCATTAGCTAAAGTTGTGTCTTTAGCTACACAGCATGAGAGGCAAACTGACATAGAGGAG AAAGGGGATTCACTAGCTAGAGTGAATGCTGCAGCAGAAGGGAAGAAACAACCATATGGAAGAGGACAATCTGGTGGTTC TTCCTACAGAAACACAGGAAAGTTTTGCACTCACTGCAAGAAATCAGGACATACAGTAGATGTGTGCCATAGATTGCATG GTTATCCAACAACTTTCAACAACAGATATGGTTCAAATGGTACTAGTCAGGTCAATAATACTGCAAGGAGTTATGATACT GAAGATCCTGAGGATGATGATTGTTCACAGAGGGATAATGAGGAGCTTTTTACTGCAGATCAGTACAAGAAAATCATAGC AATGATTCAGCAAGTTAGTACATCCAAGAAATCAGCTGAGAGTAACAATGCAACAGTGAATCATGTAGTGAAAACTGCAG CTTGTGAAGGGGATACTTCAGGGCATGGTAATCCTCTTGCTTTATCTTGTTACCAACAATATGATAGTAGAGATTGGATT ATATAATATGGTGTTAGTGACCATATATGCTTTAACAAAATGTGTTTTAATACACTCACTAAGATCAAGCCAATTAGTGT GAAGTTTCCTAACGGTATTGCAATCAGAACTAGTCATGCAGACACAGTCAGAATCACAAAATCAATCTTGTTAACACATG TTTTGTTTGTGCCTGAATTTAATTATAACTTAGTTTCAGTGCACAAGCTAGCCAAAGGACATAATCTTGATGTTGTTTTT GGTGCATTTCATTGTTTTGTCCAGGAAGTGGAAACCAAGAGGAAGATTGGTTTGGGTAGTTTACAAGCTGGTGAACTTTA CCATCTAGTAGTTACCACCCCTTCTAGTACCTGCTTTTCTATTCAGCATAGTTCAAATCCTGAAATAAATGGCATTAGCC ATGTCATTCCACCTAGTGCATTATGGCACTTCAGGTTAGGACATTTATCTCATAATAGAGTATTAGTTTTACAGTCTATG CATAGTTCTATTAGTATTAGTAAATCTCTTGTTTGTGATATATGCCATCTGGCAAAACAGAAAAGGAAAATGTTTCCTAT TAGCCTTAATAATGCTCAGAAGTGCTTTGATTTAGTTCATATGGACATTTGGGGTCCTCTTGCTCAAGCTTCTGTTCATG GTCATAAGTACTTTCTTACTGTCTTGGATGATTATAGTCGGTTTGTTTGGATTGTGTTGCTCAAGCACAAAGGAGAAGTC CAACAACATGTTAAGAATTTTGTAGCATTGATAAAGACTCAGTTTGGACATGCTATTAAAACAATCCGCAGTGATAATGG TCCAGAGTTTTCACTTCCTCTTTTCTATTCTGCTAATGGTATCATTCATCACACTTCTTGTGTCTATACCCCTCAGCATA ATGGGAGGGTTGAGAGGAAACATCAGCATATCTTGAATATAGCCAGAGGACTATTATTTCAATCCAAGTTACCTAAAATG ATGTGGTGTTATGCAGTTCTTCATGCTGTCTTTCTCATGAACAGAATACCAAGCAAATTACTGAAAGACAAGTCACCTTA TGAACTGTTATATCAAGAGAGAGCAGACCTGGAAATGCTAAAAGTTTTTGGCTCTCTTTGTTTTGCTAATACTTTAGCTA CTAACAGATCTAAATTAGATCCTAGAGCCAAGAGGTGCATTTTTCTGGGTTACAAGCAAGGTGTCAAAGGCTATGTGGTA ATGGATCTCACATCTCATGAAGTCTTTCTCTCCAGGGATGTAGTATTTCATGAGCACATTTTACCTTATAAAGGTACAGG AATGATCTCATGGAATTGTCTGGATCTACAATCACAGGGTGATACAATTGATAATGCAGAGACACCATTAGTTTTCAGAG ATGAAGACAAGGGTGCATCTAATTCTATTGAAGATCAGAGAGATGAACTAATTGCTGACAATGAGGTCACAGTTTTGCCA AGTGTCTCACCTAGTGATCCTACTGGACTCCAAAGAAGAGAATTAGCTGGCAATATACAAGTATCAGATTCAACACCACA TCATCCAAGATCTCTTGATCTATCAACAGATGACACCACCACAACAATAAGAAGGTCCACCAGACCACTTAAAAGACCTA GTTATCTGGAGAATATTCAGTGCAATGCTTTGCCCACAAGGAATAGTACTGCACATAGCATTACTCACTGCTACTCTCAT GACAAACTGTCCTCAGCACACAGTTCTTATGCTTTCAACATTTATGAAGATCAAGAACCAACTAGCTTTGCAGAGGCAAA TAAACACTCACATTGGCAGCAGGCTATGCAAACAGAAATAAAAGCACTAGAGAAGAATGAAACCTGGCAACTAGAAGACT TACCTGCTGGAATTAAGCCAATAGGTAGTAAATGGGTTTACAAAATAAAGAGGAATGCATATGGTACTCTAGCAAGATAC AAAGCTCGATTAGTAGCAAAAGGGTACAATCAGATTGAAGGTTTGGATTATTTTGATACATTCTCTCCAGCGGCAAAGTT AACAACAATGAGAGTAATCTTGGCTTTGGCTGCTGCACAAAATTGGCCCCTACATCAACTTGATGTAGACAATGCTTTCT TACATGGCACTCTTGATGAAGATGTATACATGAGCATACCTGCTGGAGTTTACTCAGAAAAACCAAATCAAGTCTGTAAA TTGTTGAAGTCTGACGACCCGGGTTTATATGATGTTTTTAGGGTTTTTCCTTGTAGGTTTTGAGTCTTTTTCTTGTGTCT CATGTAGTGTTTCATGCATTCTCATGCATTTTTATTCTTTTCTTTAGTCTTTATTTTGTTTTGGTAATTTAGTAGTTTTA TAGGTAGTTTTCTTGCATTTTAAGTAAAGTTTAGGACTTGCATGCTTTTGTTGTGTTTTATGAAGGACCTCTTGTGCTAA TGAGCTCTTGGAGCTTCTAGAATCTTCCTTGACTTGTTGGTTAGGTTTGGAGAGCAGAAACTGAAGGAGAAAGAAGGCCA AGAAGCGTGGAATTGATGAAGAACTTAAAGAGGATTGAAAAGAGGAGTTTCAAAAGTCAAAAAGTCTTTTTCAGACGAGC TTAAGCGCCTAGGCGCTGGGAATGGGCGCCTAGGCTCCAATTAGCTCCAGAAAGCATGTTTTGGGCATGCAATTGGCGCT CAGGCGCTCTGAATTGGCGCCTGAGCGCCCAGAACAGCCCAAACTCGGGAATTTTGCCTATAAATAGGATTTTAGTCATT TTCTTTTGTAATTTTTTGATACTTTGTAAAATTCAGAGGTAGAGGATCATCTAGGAGAGTGAGAGAAGGCTTCCAAGCTT GTAATTCAGGTTCTTAGCCAAGCATGGCTCATGCTTGGCTAATCTCTCTTCTTTTGC
CDS sequence (LotjaGi5g1v0040800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGCGCGTTGGTTTCAAAGAACAAGTTTCGTTTCGTTAGCGGTGAAATTCCAGTTCCTACTGCTACAGATGCAAA TTTTGATGCCTGGGATCGCTGCAACAGCCTAATCCACTCATGGATTCTCAATTCGGTAACAACTTCTATAGCAAATAGCA TTGTTTTTGTTGAAAATGCTTGTGATGCTTGGAGAGATTTGAGAGATCGGTTTTCGCAAGGAGATCTTGTTAGGATTGCT GAACTGCATAATGAAATCAGTAATTTGAAACAAAATTCAAAGTCTGTGAATGAGTACTATAATGAATTGAAGATACTCTT AGAGGAATTGGATCATTATCGCTCAATTCCACAATGCAAATGCACTGTTCCTTGTAGATGTGATGCAATTGAGAGTGTGA AACTGTTTAGAGAACAGGATAATGCTATCAGGTTCCTTTTAGGGTTGAATGATAGTTTTGGAGTAGTAAAATCGCAGATT TTGATGAGCCATCCTTTGCCACCATTAGCTAAAGTTGTGTCTTTAGCTACACAGCATGAGAGGCAAACTGACATAGAGGA GAAAGGGGATTCACTAGCTAGAGTGAATGCTGCAGCAGAAGGGAAGAAACAACCATATGGAAGAGGACAATCTGGTGGTT CTTCCTACAGAAACACAGGAAAGTTTTGCACTCACTGCAAGAAATCAGGACATACAGTAGATGTGTGCCATAGATTGCAT GGTTATCCAACAACTTTCAACAACAGATATGGTTCAAATGGTACTAGTCAGGTCAATAATACTGCAAGGAGTTATGATAC TGAAGATCCTGAGGATGATGATTGTTCACAGAGGGATAATGAGGAGCTTTTTACTGCAGATCAGTACAAGAAAATCATAG CAATGATTCAGCAAGTTAGTACATCCAAGAAATCAGCTGAGAGTAACAATGCAACAGTGAATCATGTAGTGAAAACTGCA GCTTGTGAAGGGGATACTTCAGGGCATGGTAATCCTCTTGCTTTATCTTGTTACCAACAATATGATAGTAGAGATTGGAT TATATAA
Protein sequence (LotjaGi5g1v0040800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRALVSKNKFRFVSGEIPVPTATDANFDAWDRCNSLIHSWILNSVTTSIANSIVFVENACDAWRDLRDRFSQGDLVRIA ELHNEISNLKQNSKSVNEYYNELKILLEELDHYRSIPQCKCTVPCRCDAIESVKLFREQDNAIRFLLGLNDSFGVVKSQI LMSHPLPPLAKVVSLATQHERQTDIEEKGDSLARVNAAAEGKKQPYGRGQSGGSSYRNTGKFCTHCKKSGHTVDVCHRLH GYPTTFNNRYGSNGTSQVNNTARSYDTEDPEDDDCSQRDNEELFTADQYKKIIAMIQQVSTSKKSAESNNATVNHVVKTA ACEGDTSGHGNPLALSCYQQYDSRDWII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 301 | 297 | 1.0E-66 | – | |
| PANTHER | 5 | 301 | 297 | 1.0E-66 | – | |
| Pfam | 38 | 150 | 113 | 1.8E-12 | ||
| Coils | 79 | 99 | 21 | - | – | |
| MobiDBLite | 248 | 264 | 17 | - | – | |
| MobiDBLite | 248 | 277 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0040800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…