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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0041800 |
| Transcript ID | LotjaGi5g1v0041800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein REVERSION-TO-ETHYLENE SENSITIVITY1; TAIR: AT2G26070.1 protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778); Swiss-Prot: sp|F4ITL6|RTE1_ARATH Protein REVERSION-TO-ETHYLENE SENSITIVITY1; TrEMBL-Plants: tr|I3S7V1|I3S7V1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0041800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6984162..6985826) extracted from Lotus japonicus Gifu genome v1.2.
ACTATGGAGTTAAATTCAAGCTATGACATTGAGCATTCGCATTCTACACAAAGAATACAGCATGAGCTGTGGCCACTAGA TCCCATCGATCCGAAAAAGGCAAAGTTTCCATGTTGTTTGGTTTGGAATCCGCTTCCCGTTGTGTCGTGGTTGGCACCCT TCATTGGTCATATTGGCATTTGCAAGGAGGATGGAGTTGTTTTGGATTTTTCAGGATCATATATTTTGAGTGTGGATGAT TTTGCATTTGGTCCAGTGGCAAGGTACCTGCAACTCGACCGTAGTCAGGTGATGTTTCTCAAGTTTGCTGTCTCTGTCTC TTGTTTCACTTTATCTGTTCAAATTGTTCACATTCATATATATGTGCATGTTCTGTGATACAGTGTTGTAACTAATTCAA CTTTTCTTTTTGGCTGATGATGGGATTCTGGGGAACTAAAGGACATTTATGGTCATTGTAGTTATATGTGAAACTGTTGA AGCCAAACATTGATGTATTAGGAAAACACCAACATATTTGACTGTAGTATTGATAATCATGTCATTGCTGGAAATGGGTT GCATTGGCAGCGTAGAGGGCTCTGTGAAATCAAAATCTACAAGTTATTCAAATGGGAATAACTTGTAGGTTTACACTTAT ATTTGAAATCTCCATTTCCGAATACCTATAGATATCACAAGATGCTAATTTGAATTGACACATTAAGTTTGCAATTGATT TTGATTACTGGTGCTTGATTCCTAATTTTAAACCTTCATGGTGCTTATTGTTTTGGTTTTTAATCCCAGCTGCATGATAC TGGGGCAAACATGCTCAAAATTGTAAGATGTGTTTGTTATGCTCATAAGCTGAGATTATTGCCACTCAGTTTAAGCCATT GTTTGATGTTATGATTTTACCTTGCTTATTGTAAATGTAGTTTGTTTGTACTTTATACTTGTGTTGGAATATTTTTCAAC TGGGGGGAGGGACAAACATAGGCGTCAAGGTTTTAATCTCAATGGATCTTGGCACCTGTTCTTCCATAGAATCACCTGGA CCTGTATCACACCTATGTATCCCCAATCAGTGAGAGTTACGAAATCGTAACTTATACTCCGGAAATAGACTTAGATGTTT ACAATTTGGGTTTACAAATCTCTCCCCTTTGATCTATCTGTTAAAATTTTGGTTGGAGTCAAGTTTAATTGTTTGCGAGT GTTAACTCTATTTGACATTTTGTGGAACTTGAAATGTTGCAGTGTTGCTTCCCTCCTAACCTATCAGCACACACATGCAA GCATGGCTACCAGCATTCTGAGTATGGCACTGCAATCACATGGGATGATGCATTGCAGTCGAGCTCGCGGTATTTTGAGA ACAAAACTCACAACCTTTTCACCTGCAACTGCCACTCATTTGTTGCTAACTGTCTGAACCGGCTCTGTTATGGAGGATCA ATGAGCTGGAACATGGTAAGTGTAGGAGCTCTAATACTATTCAAGGGGAGCTGGGTTGACTTCAGGTCTGTTATAAGGGC TTTCTTGCCTTTTGTTGTGGTTGTGTGCATTGGAGTTCTCATGGTTGGGTGGCCCTTCTTACTTGGGTTGTTATCCTTCT CTCTACTCTTGATGGGGTGGTTTCTAGTGGGTACTTATCTTGTTAAAAACTTACTAGAGTGCTAG
CDS sequence (LotjaGi5g1v0041800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTAAATTCAAGCTATGACATTGAGCATTCGCATTCTACACAAAGAATACAGCATGAGCTGTGGCCACTAGATCC CATCGATCCGAAAAAGGCAAAGTTTCCATGTTGTTTGGTTTGGAATCCGCTTCCCGTTGTGTCGTGGTTGGCACCCTTCA TTGGTCATATTGGCATTTGCAAGGAGGATGGAGTTGTTTTGGATTTTTCAGGATCATATATTTTGAGTGTGGATGATTTT GCATTTGGTCCAGTGGCAAGGTACCTGCAACTCGACCGTAGTCAGTGTTGCTTCCCTCCTAACCTATCAGCACACACATG CAAGCATGGCTACCAGCATTCTGAGTATGGCACTGCAATCACATGGGATGATGCATTGCAGTCGAGCTCGCGGTATTTTG AGAACAAAACTCACAACCTTTTCACCTGCAACTGCCACTCATTTGTTGCTAACTGTCTGAACCGGCTCTGTTATGGAGGA TCAATGAGCTGGAACATGGTAAGTGTAGGAGCTCTAATACTATTCAAGGGGAGCTGGGTTGACTTCAGGTCTGTTATAAG GGCTTTCTTGCCTTTTGTTGTGGTTGTGTGCATTGGAGTTCTCATGGTTGGGTGGCCCTTCTTACTTGGGTTGTTATCCT TCTCTCTACTCTTGATGGGGTGGTTTCTAGTGGGTACTTATCTTGTTAAAAACTTACTAGAGTGCTAG
Protein sequence (LotjaGi5g1v0041800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNSSYDIEHSHSTQRIQHELWPLDPIDPKKAKFPCCLVWNPLPVVSWLAPFIGHIGICKEDGVVLDFSGSYILSVDDF AFGPVARYLQLDRSQCCFPPNLSAHTCKHGYQHSEYGTAITWDDALQSSSRYFENKTHNLFTCNCHSFVANCLNRLCYGG SMSWNMVSVGALILFKGSWVDFRSVIRAFLPFVVVVCIGVLMVGWPFLLGLLSFSLLLMGWFLVGTYLVKNLLEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 1.1E-112 | – | |
| PANTHER | 1 | 234 | 234 | 1.1E-112 | ||
| Phobius | 1 | 157 | 157 | - | – | |
| Pfam | 44 | 93 | 50 | 3.2E-20 | ||
| Pfam | 94 | 179 | 86 | 1.8E-22 | ||
| Phobius | 158 | 175 | 18 | - | – | |
| Phobius | 176 | 186 | 11 | - | – | |
| TMHMM | 185 | 207 | 23 | - | – | |
| Phobius | 187 | 205 | 19 | - | – | |
| Phobius | 206 | 210 | 5 | - | – | |
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 211 | 229 | 19 | - | – | |
| Phobius | 230 | 235 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0041800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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