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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0047400 |
| Transcript ID | LotjaGi5g1v0047400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q5HPT1|ISPT_STAEQ Isoprenyl transferase; TrEMBL-Plants: tr|I3SYH7|I3SYH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0047400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7971098..7973183) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAATGGAGGAAGTGCTATTTGGATGTGATATTGGTTCCCTTGGGATTGCTTATAAGCATTTGTTACAATTTCTGGTT GTGGCATAAGGTTCGAACTCAGCCACACACAACCACTGTTGGCATCAATTCCAGTGGCCGTAGAAATTGGGTTAATGCCA TAATGAAGGTACAATTTTTTATTTTCTGATTTACTAATGTTTATGATATAATATTGCGATTCATGTTTAGCATTAATTGA ACTATTTCAGATAAAACGCGCAGATCTGTAGATTCATTATAGAAGTTTTTACTAGACTTATCTTATTTCCGGGGAATATA AGAAGGAAATGGAGTATAAGAATGCAAGATTATGATCCCAAGAATAGGATATTGCGTGTTCTATATTCCTTTGGATATAG CTTTCCTCAATTTATTCTGGTTCGATTCTACCAGAAGATAATGACACTTTAACATTTAGTTAATTAAAATCAAAGAAAAA ATGAAATGTTCTTTAAATATGGAATAATTAGGTGGATATCCAATTCCAGTGGGTTGTTGCTAGACCTAGATAATTTCCAT GTGCACTTGCACGAATTAAAGATAATGTATTCAAACAGAAAATCTAACATTTGTGCTCCAAATAGTGCAAGCTGCTTTTA TCTCACTTCTATACCCAAAAAAAAAGCAATTAATTTTATCTTTTCATAATTTACACTAATACGTACCAATGACTATGAGT CAATTAAATATCATCACATCTTCACAACAACCCCACAAATTCTTTTTATAAATGAGTGTTAGAAAAAAAAATTCCTCCTT TTACCTCAAATTGATATCGAATTAAATGGAAGTACAAGTTTTTAAATACTTCAAACGATGATAGTTGTCCGATCCTTCCA ACTTTTACACTTTCTCTATCCTTTTTAGAAAAAAAAAATTGGTGTTTTCTCCTACCACAAATATTATTTAGTTAGGTAAT TTTTTGGATTAAATGTGACATCACCAAAATGTTGTTTATTTCAATTTAGATAGAGTCCCATGATTCCAAGAAAAAGAATT ACTACTTTATGTATAGTTCTGTTCTGTCCATACAAGTAACTCATATATTATTACCTAACTAGTAGGTGGCTGCTGTGATG AATCATCACACAATGGGTAAGCTATAAGCTTCCTTTTTTTTTTGCTAAGCAGCTATAAGCTTCCATGAATGGAGAATAAA TTATACCCATCCAAAATCCACCTCCATCTATTGAAATAAAAAAGAAGAGAGAAAAAAATGTAAAATATGACAAATGATAT AATAGGAAAAAAAAAATGAAAGTATCAATATATCAAAACTCTCCATTAACACACTAAGGACACTATTTTAGCTTTTGTTT TGTTATTCATCAAATTTTGACCCAAATTAGTTTTCATTCACAAAAATAAAGTGTACATGTACTATTTACTTGACGAGGTA TGTTAGGAAAGGTTAAGGAGTCTCACATTGACTAATAAAATAGTTAAATAAGACTTTAGTTAAATAGGTCTAGCTAATTA ATATTTGTATAAATTAATTGTTATTATCATTGCAGGATAATGAAAAGAAAAACATCCTGGCCGTTCAATCACTGAGGAAC ACAATCATGGGAGCAACCCTAATGGCCACAACCTCCATTCTCCTCTGCTCAGGTTTAGCAGCAGTTATAAGCAGCACCTA CAGCGTGAAGAAGCCACTCAACGACGCAGTTTATGGCGGTCACGGCGAGTTCATGATAGCACTGAAATACGTTACTCTGC TCACAATCTTCCTCTTCTCATTCTTCTGCCACTCCCTGTCCATAAGGTTCTTGAACCAAGTCAACTTCTTAATCAACACC CCTCAAGATCCAATGTCATTGGTTACCCCTGAATATATAAGCCAGATCTTGGAGAGAGGTTTCGTTCTCAACACTGTGGG GAACAGGCTCTTCTATACAGGGCTTCCTCTTTTGCTTTGGATCTTTGGCCCTGTGCTGGTGTTCCTGTCCTCTGTCACGA TGGTTCCAGTGCTTTACAATCTTGATGTTGTGTTCTTTAGTGGGAAGGGAAAGATGGACTTGAACCAAAAGGGGGATTTT GTTTGA
CDS sequence (LotjaGi5g1v0047400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATGGAGGAAGTGCTATTTGGATGTGATATTGGTTCCCTTGGGATTGCTTATAAGCATTTGTTACAATTTCTGGTT GTGGCATAAGGTTCGAACTCAGCCACACACAACCACTGTTGGCATCAATTCCAGTGGCCGTAGAAATTGGGTTAATGCCA TAATGAAGGATAATGAAAAGAAAAACATCCTGGCCGTTCAATCACTGAGGAACACAATCATGGGAGCAACCCTAATGGCC ACAACCTCCATTCTCCTCTGCTCAGGTTTAGCAGCAGTTATAAGCAGCACCTACAGCGTGAAGAAGCCACTCAACGACGC AGTTTATGGCGGTCACGGCGAGTTCATGATAGCACTGAAATACGTTACTCTGCTCACAATCTTCCTCTTCTCATTCTTCT GCCACTCCCTGTCCATAAGGTTCTTGAACCAAGTCAACTTCTTAATCAACACCCCTCAAGATCCAATGTCATTGGTTACC CCTGAATATATAAGCCAGATCTTGGAGAGAGGTTTCGTTCTCAACACTGTGGGGAACAGGCTCTTCTATACAGGGCTTCC TCTTTTGCTTTGGATCTTTGGCCCTGTGCTGGTGTTCCTGTCCTCTGTCACGATGGTTCCAGTGCTTTACAATCTTGATG TTGTGTTCTTTAGTGGGAAGGGAAAGATGGACTTGAACCAAAAGGGGGATTTTGTTTGA
Protein sequence (LotjaGi5g1v0047400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWRKCYLDVILVPLGLLISICYNFWLWHKVRTQPHTTTVGINSSGRRNWVNAIMKDNEKKNILAVQSLRNTIMGATLMA TTSILLCSGLAAVISSTYSVKKPLNDAVYGGHGEFMIALKYVTLLTIFLFSFFCHSLSIRFLNQVNFLINTPQDPMSLVT PEYISQILERGFVLNTVGNRLFYTGLPLLLWIFGPVLVFLSSVTMVPVLYNLDVVFFSGKGKMDLNQKGDFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 232 | 232 | 3.3E-131 | – | |
| PANTHER | 1 | 232 | 232 | 3.3E-131 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 26 | 20 | - | – | |
| TMHMM | 10 | 28 | 19 | - | – | |
| Pfam | 11 | 215 | 205 | 1.4E-81 | ||
| Phobius | 27 | 77 | 51 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 78 | 100 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 121 | 142 | 22 | - | – | |
| Phobius | 143 | 187 | 45 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 188 | 212 | 25 | - | – | |
| Phobius | 213 | 232 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0047400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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