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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0049500 |
| Transcript ID | LotjaGi5g1v0049500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G20910.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2; TrEMBL-Plants: tr|I1M9B5|I1M9B5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0049500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8355169..8358777) extracted from Lotus japonicus Gifu genome v1.2.
AATTGGGTGTGATGACCTACTCAGACATCAGTAGATGCGTTCGTAGGCGATCACACCCCTTGGTTTCCCCTTCCTGAAGA AAATAAATTTATATAAAAAAAAAATCAAAATACGAACCAGACGAAGAAGAAGAAGAAAGGGTTTCTGAATTTCTCTGATT TCATCACAATTTTGACTCCTGAGAGAAATTCAGTTGAATTTGCATTCGAATTTGAGAAGAGAATGGAATCGGAGGATCTG TTGAAACAGGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAAAAGTTTGAGAGCGCTGTTTCATCTCTCAAATC GTTGCTTCCACAAACTTATCCTTCAGCTTCTCCTTCGCTCCGCAAATCTGTATGCTCAATTGCTCATCTTATCTCTGTTT TCAATTCATATTTGAAGTTTCCTGTTATAATTGTATAGCTAGTTGGGGGTACTGGTGTATTCTTCAATTTAATTTTGTAT TGTTTCTGGGTTTGGTCCCTTTTTCGATGATTTTATGGTTTAGGCCCGAAATAATTGATTTTGATTTTGTTTGGATTGGT ATATATGATTTTGTATGTGATAATGTTAATATGAATATATAAACTAATGTACCATGGACTTAACTCACTTGATTGAGATA TTTGTTTGCAAATGTTAAGGTTAGGAGTTAGGAGGTTTAACATTTTAGCTGAGCCTTCCCTATGGATGTTGTTAATACCA AATGCCAATCCTTGGCTCAACTAATATAAGTTTGAAAAGGCTTTGTTGAAATGTGTTTAGTTTGACTAGTCAAAGTCAAA GATCTTTAAGTGCCCATGTTGAGGCACTATGTTTGGATATCCATTAGCGCGAGTTTAAATAGACCTTAACACGCACTTCA TGGCGAAAAGTGAACAGAACTCTTCTGATGAATTGAGATGAAAGTCCGTTCACCTTTTATTCAATTGGTATCCAGACACA CACTAGGGATTCCTTCCGTACCCTTAAACTTTGATTGGAAAAAGAAGTGCCTGTTTTTTTGCTAAAGAATTAAAAGTCAA GAAATTGACTGTGGTATTTGCTGCTGGTGGTTGCAGTTTTATTCAGTTATATGCCGAGTTGCTACGGTGTTGAAGACTAG ATATACAGCACCGGGTTTCTGGAATGCTGGCCTAGGCCTTTTTGAGCAGGCTTTACTCCTAGTTTCTGAACCTTCTGAGA AGGCGCACCTGAAGGCTTGCATTGCTAATGCCAAGGAACATTTGCATCTAGAAGACAACCCATCACAAGCTTTGCAACCT GCAGAGAATCAAGCAAACAGAGGTGATTTTCTATGGAAAATATATGCAAATTTTCAATTTTTTTTTCTTGAGGTGTTATT TATAGTTTTTCATGTTCATGTGTTGTATCCTTCAGATGTTATGCAATCATGTAAGTTCCGCTTACAATATTTATTGCATT TGTCTTATTCAGGATATCTTTTTGAGGGACACCTTACAGTGGATACAGAGCCACCACAACCTCAATGGTTGGTGCAGTCA AACCTCTTGGCGACTGCTGCTACACTATTTGCTGCTGAATCCTCCCGAGGTTCAGCAGCAAATGATACTACACCAGAAGA TGCGGCAAATGTGCTTGAAGATCTTATGAATAGATTGGAAGAAGTTGTGCCCCTGGTACTTATCCAAAATCTTTTCATGT GTTTTTGATGACCACTGTCCACTCTGGTTTCAATTTTTTCGCTCTCAAATGTCAACGTGGCTTTGAATTCCTAGATTCAG TTTCTTTAGTTAGATAAGTTTCAACAAATAGGTATAATGTGGTTTAGTCATTTGAGACATAAGTAATCCAAGCTATCCTA GCTTCATTTGAGATCATTAACATTTAGGCTCAATTTGGAACTTGAGCACACCTAGTTGACTTTGAACAAGCATTTCATCA GGTCATATTAAAGAAATGTAAGAAACACCAAGCAACTTGAGATTGGTTCAGTAGAATCCTTCACAACAAGTTGAGGAATC AACACAAACATATGAACTTGACTTCCATTTATAATCCTTATGGTTACAATTCCTATCACAGTTGCTTTACTGGATCTTTC GTTTATATTAATGCATCATTTGTAGGGTAACTAGATATAGACAACCTACTCAGTTCAAATCATTTTGTTAATTCCTTGGT CATGTATTGTTCTTTTCGACTTGCTTTTTGGTTGATATATGTATATGTATTTTGTCTCTTATGCTCAGCTGTTCCATTCT TCCCTTTGACATTGTTTAATTAAGGGTGACTGACTGTTTTTACTTGTTTTTCTTATCGTATTAGATGGTGGATGAAGGTG ATTTTGTAGCTCCAAAAGCCCCTCCTGCCAGTAAAGAAGTTGTGGCAAAACTTCCTGTTGTTACTCTCACAGAGGAAATA CTTGCTAATATTGGGAAAGATGCAGAGTGTGCAATTTGCAGGGAAAACTTGGTTGTAAATGACAAAATGCAAGAGTTACC ATGCAAGCACACGTTCCATCCACCATGTCTTAAGCCGTGGCTGGTATTGTCTCTAACTCTACGTCCACAGATTTATTGGA ATTTCTTTGTTGCACTTATAAACCATTTCTATGCATTCAATTTATGATTAGATGTAAAGTCTGATCAATGTTATCCTTTA TGTGGCAGGATGAGCATAATTCATGTCCAATCTGTCGGTACGAGCTGCAAACTGATGATCATGCCTATGAGAGTTGGAAG GAACGGGAAAAAGAAGCGGAAGAAGAGAGGAAAGGTGCTGCAAATGCAGTTCGAGGTGGTGAATACATGTATGTTTAAAT GTTGCCTATTCAATTATGGCTAATAACACTGTTGTTTGGTGTAAAATAGTGGATTGAAACTATTCAGTTGGTGAATAGTT ATGAATTCTTTATCATTTCGAGCTAGAGTTATCATTTCTTAAGGTTTAAGGAGGGGTCTCATATGATATGCCTATTCCTT GAAATACTGTCAATATTTCACTTCGTATTTTCACTGGACACTGATTGTCTATACCGCTCCAAAAAATATTGGGAGCATCA ATGTATGTGCTCAATTTTATCCCATACTTGCGCACTTTTTTTACCCGGAACATGTGTTCAAGGTTTTATGTTTAACAATA AATCATAAAATGCACCCCATTAGCCATTTTTGAAGTACGTGCATCATGAACTCCAAAGCACATTGCGCCAAAAGGTGTAT GAGAGAGTCTCTTTTTTTTGGGTCAAATGGGAGAGCTTTTGATTCACCGCAATGTGGAGGGTAGGACGTGAGGTGCCAAA AAAGCGGAATTAAATATGCGCTTAGGTAGATTGGGGTTTCTAGTTGTGACAATTAGAGCATCTCCAACTGGTGCCTTAGC CGAGCTGGAGATGCTAAGGTCTTTGCCTTATTTTTTGGCACCATTGGAGTTTGCTGAGGTGAAGGTGAAGGACTGATTCC TTAAAATTTAGGATTTGTTTATTGTGCAAGGAACTTTGTATTTTGGTTCCTTACATTTAAATACTGGGAATTTTTACCAA CCCCCCACACACACACATTTAAATACTGGGAATTTTAAGGACTGATTCCTTAAAATTTAGGATTTGTTTATTGTGCAAGG AACTTTGTA
CDS sequence (LotjaGi5g1v0049500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCGGAGGATCTGTTGAAACAGGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAAAAGTTTGAGAGCGC TGTTTCATCTCTCAAATCGTTGCTTCCACAAACTTATCCTTCAGCTTCTCCTTCGCTCCGCAAATCTTTTTATTCAGTTA TATGCCGAGTTGCTACGGTGTTGAAGACTAGATATACAGCACCGGGTTTCTGGAATGCTGGCCTAGGCCTTTTTGAGCAG GCTTTACTCCTAGTTTCTGAACCTTCTGAGAAGGCGCACCTGAAGGCTTGCATTGCTAATGCCAAGGAACATTTGCATCT AGAAGACAACCCATCACAAGCTTTGCAACCTGCAGAGAATCAAGCAAACAGAGGATATCTTTTTGAGGGACACCTTACAG TGGATACAGAGCCACCACAACCTCAATGGTTGGTGCAGTCAAACCTCTTGGCGACTGCTGCTACACTATTTGCTGCTGAA TCCTCCCGAGGTTCAGCAGCAAATGATACTACACCAGAAGATGCGGCAAATGTGCTTGAAGATCTTATGAATAGATTGGA AGAAGTTGTGCCCCTGATGGTGGATGAAGGTGATTTTGTAGCTCCAAAAGCCCCTCCTGCCAGTAAAGAAGTTGTGGCAA AACTTCCTGTTGTTACTCTCACAGAGGAAATACTTGCTAATATTGGGAAAGATGCAGAGTGTGCAATTTGCAGGGAAAAC TTGGTTGTAAATGACAAAATGCAAGAGTTACCATGCAAGCACACGTTCCATCCACCATGTCTTAAGCCGTGGCTGGATGA GCATAATTCATGTCCAATCTGTCGGTACGAGCTGCAAACTGATGATCATGCCTATGAGAGTTGGAAGGAACGGGAAAAAG AAGCGGAAGAAGAGAGGAAAGGTGCTGCAAATGCAGTTCGAGGTGGTGAATACATGTATGTTTAA
Protein sequence (LotjaGi5g1v0049500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESEDLLKQELEELQKQLGKKQKFESAVSSLKSLLPQTYPSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLGLFEQ ALLLVSEPSEKAHLKACIANAKEHLHLEDNPSQALQPAENQANRGYLFEGHLTVDTEPPQPQWLVQSNLLATAATLFAAE SSRGSAANDTTPEDAANVLEDLMNRLEEVVPLMVDEGDFVAPKAPPASKEVVAKLPVVTLTEEILANIGKDAECAICREN LVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 7 | 27 | 21 | - | – | |
| PANTHER | 33 | 314 | 282 | 5.9E-109 | – | |
| PANTHER | 33 | 314 | 282 | 5.9E-109 | – | |
| Gene3D | 197 | 281 | 85 | 3.8E-21 | ||
| SUPERFAMILY | 228 | 281 | 54 | 1.32E-20 | – | |
| Pfam | 233 | 275 | 43 | 6.1E-13 | ||
| SMART | 234 | 274 | 41 | 2.9E-6 | ||
| ProSiteProfiles | 234 | 275 | 42 | 12.622 | ||
| Coils | 285 | 305 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0049500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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