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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0049600 |
| Transcript ID | LotjaGi5g1v0049600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT4G33160.1 F-box family protein; Swiss-Prot: sp|Q9SMZ3|FBX13_ARATH F-box only protein 13; TrEMBL-Plants: tr|C6TD64|C6TD64_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0049600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8361659..8364015) extracted from Lotus japonicus Gifu genome v1.2.
CGCGAAGCTTCCTATCTCTTGAGCAAGCTCACTTTCCCTTTTTCACTTTTCAGATTTCCTTCTTCAAACCAAACCCCATT TTAAACACACTATCCAACACCAGCTATATATAATTATTGTGTTCTGCTTATGCAACACACTCCTCACCGTGTGCTTTGTT TTCCTTTCCGCTCAACAAAGCAGCAGCTTCTGTTTCTTTTGCATTTTGAGTCTCAAGTTTTATGTTGGTTTCTAAAGGAT AGATTGTTAAGCTATGAGGGTCATTTCAAGTTTGCAGCTTTAGGCCCCGTTTGGAAGAGCTTATTTAGCTTATATGATAC CTTAAACGCTTGTGTAAGTGTTTGTGAGAGCTTATGCAAATAGCTTACGGTAGGCCATTAGTTCATGATAGCTTATGAAC AAAAATCTTATGCTATAGCTTATTTTCAATTTATTTCAATAAATTTTTATAAATAGCTTATGAATAAGCGCTTATGTCAG AAGCACTCATGGTCGCTTATGACCATAAGCACTTAATTAAGCTATTTCCAGAAGCCTTGCAATTTCCATTGCAAATCTTG AAGGGGTTGGGGAAGGAAAGTGAAAGTCTTGATCTTTTGCGTGTGGGTAACCTTTAGATTGTTGGTTTTAGGCCACCCTT TTTCATTATATGGAATCCGTTTGTATGGCAACCATATAGCACTTTCAACTTCAAGCAGATAAGCCCTAATAAGCTCCAAT AAGTTTGCATCCACAGCTCATAATTTTGGTTCAATTTCAGTGTCTTTATTTACATCATTTGGTTTCTATGTTTAAAAATG GAAAAAATTGATTTCTTTTATAATGTCTTATTGGTCCCTTTGTTTGTGCAGTTGTTTTCTCCAAATTTGTGGTCAATGGA ACATAGTTTGAAAAGAAAGTACCCTGAAAATGGAGAACAACTATTCTTCAACAGTTTTTCCCTCGATGACCTTAACGGAG ATCTTTTTGAAAGGGTGCTTTCATGGCTACCAACTTCCAGTTTCCTCCGCCTTACTTCGGTGTCCAAAAGATGGAAATCG GCTGCTGCTTCTCCGAGTTTCAAGCTCACCTGCTCGCACATTCCTTCGCGCGATCCTTGGTTTTTTATGGTTGCACCCAG CCTTAACCAATCTGTTATCTTTGATTCTGCTGAAAACAGTTGGAAAAGGCTCAATCATCCCAGTCCTCTGCGTGACGATT CTAACAGAAGTTGCATGCCTGTTGCAGCCTCTGGTGGCCTGGTTTGCTACCGCAAATGGTCCGGAGACTTCATTGTTTGT AATCCGGTGACCGGATCTTGCAGTGAACTCCCTCCATTGCATCTTTCGTTGGAAAATCAATCTCTCAATGCTGTTGTTAT GAGTAAAACATCCAAAGACCAATTGTCCTACAAGATTATATTAGTCTTTGGTGAACTCCCAAATATTTTGTTTAAAGTCT ACAACTCAAGCTCTGGTTGTTGGGAAGATGAGACTGCACTTAGCAGAAAATTTGATGATAATACCGTGGATTGTGATTCA AATGATGACAATGTTGTGTACTTCCTCAGCAAAGCTGGAAATGTTGTGACGAGTAGTATGCAGAGAAGCCCGTCTAAGCA ATATTCATCGGTAATTGCTAACAAAGACGGTGAGGAGATAGTCTATTTTCTTAGTTCCACGGGTATGGTCATCGCTTGCA ATTTGACATGCAAGTGCTTCTTTGAGTACCCTATGTTATTGCCTGTTTTTAGTGAGTACTCCATTGATGTTGTGGAGTGT GATGGTGAGATGCTAGTTGTTTTGTTATCGGAATTCTTCGAAACTGTGAGTCTTAGAGTGTGGAAATATGATGAGGCTAA TCAATGCTGGCAACAGATTGCAGTGATGCCTGCAGCAATATCCCATAAGTGGTTTGGAAAGAAGGCAGATATTAATTGTG TCGGAGCCGGTGACCGGATATTCATATGCTTAAACTCCCCGGCGTTATGCACTTACATTATGTGCGATTTGGCAACCAAC AAATGGGTTGAATTGCCAAAATGTTGCATAAATGGGGAAATCATGGAGTTCATGTCTGCATTTTCAGTTGAGCCGAGGAT AGAGGCTTCTGTGTGAGTGACAATAAAATGCCATATCATGGTATCTTGATTTTGGTTACCATCCTTTACTGTGATCTGTT AGCTTAAATTTTCTTTATTTGTACTTAATTTTTCATGCAAAATAGCTAGTACTGGTAGAGATTGGTATGAAAAATTGGAG ATGGAAGCTAACCAAATGATTGATTGCTAACTGATATATTGTAATTTACTTCATTGATCTTTAGATGTACACTGTATTCA GTGATTGGTATTAATAATGAATGTCCGTATTGATGAT
CDS sequence (LotjaGi5g1v0049600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAAATTGATTTCTTTTATAATGTCTTATTGGTCCCTTTGTTTGTGCAGTTGTTTTCTCCAAATTTGTGGTCAAT GGAACATAGTTTGAAAAGAAAGTACCCTGAAAATGGAGAACAACTATTCTTCAACAGTTTTTCCCTCGATGACCTTAACG GAGATCTTTTTGAAAGGGTGCTTTCATGGCTACCAACTTCCAGTTTCCTCCGCCTTACTTCGGTGTCCAAAAGATGGAAA TCGGCTGCTGCTTCTCCGAGTTTCAAGCTCACCTGCTCGCACATTCCTTCGCGCGATCCTTGGTTTTTTATGGTTGCACC CAGCCTTAACCAATCTGTTATCTTTGATTCTGCTGAAAACAGTTGGAAAAGGCTCAATCATCCCAGTCCTCTGCGTGACG ATTCTAACAGAAGTTGCATGCCTGTTGCAGCCTCTGGTGGCCTGGTTTGCTACCGCAAATGGTCCGGAGACTTCATTGTT TGTAATCCGGTGACCGGATCTTGCAGTGAACTCCCTCCATTGCATCTTTCGTTGGAAAATCAATCTCTCAATGCTGTTGT TATGAGTAAAACATCCAAAGACCAATTGTCCTACAAGATTATATTAGTCTTTGGTGAACTCCCAAATATTTTGTTTAAAG TCTACAACTCAAGCTCTGGTTGTTGGGAAGATGAGACTGCACTTAGCAGAAAATTTGATGATAATACCGTGGATTGTGAT TCAAATGATGACAATGTTGTGTACTTCCTCAGCAAAGCTGGAAATGTTGTGACGAGTAGTATGCAGAGAAGCCCGTCTAA GCAATATTCATCGGTAATTGCTAACAAAGACGGTGAGGAGATAGTCTATTTTCTTAGTTCCACGGGTATGGTCATCGCTT GCAATTTGACATGCAAGTGCTTCTTTGAGTACCCTATGTTATTGCCTGTTTTTAGTGAGTACTCCATTGATGTTGTGGAG TGTGATGGTGAGATGCTAGTTGTTTTGTTATCGGAATTCTTCGAAACTGTGAGTCTTAGAGTGTGGAAATATGATGAGGC TAATCAATGCTGGCAACAGATTGCAGTGATGCCTGCAGCAATATCCCATAAGTGGTTTGGAAAGAAGGCAGATATTAATT GTGTCGGAGCCGGTGACCGGATATTCATATGCTTAAACTCCCCGGCGTTATGCACTTACATTATGTGCGATTTGGCAACC AACAAATGGGTTGAATTGCCAAAATGTTGCATAAATGGGGAAATCATGGAGTTCATGTCTGCATTTTCAGTTGAGCCGAG GATAGAGGCTTCTGTGTGA
Protein sequence (LotjaGi5g1v0049600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKIDFFYNVLLVPLFVQLFSPNLWSMEHSLKRKYPENGEQLFFNSFSLDDLNGDLFERVLSWLPTSSFLRLTSVSKRWK SAAASPSFKLTCSHIPSRDPWFFMVAPSLNQSVIFDSAENSWKRLNHPSPLRDDSNRSCMPVAASGGLVCYRKWSGDFIV CNPVTGSCSELPPLHLSLENQSLNAVVMSKTSKDQLSYKIILVFGELPNILFKVYNSSSGCWEDETALSRKFDDNTVDCD SNDDNVVYFLSKAGNVVTSSMQRSPSKQYSSVIANKDGEEIVYFLSSTGMVIACNLTCKCFFEYPMLLPVFSEYSIDVVE CDGEMLVVLLSEFFETVSLRVWKYDEANQCWQQIAVMPAAISHKWFGKKADINCVGAGDRIFICLNSPALCTYIMCDLAT NKWVELPKCCINGEIMEFMSAFSVEPRIEASV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Phobius | 26 | 432 | 407 | - | – | |
| PANTHER | 31 | 431 | 401 | 3.2E-148 | – | |
| PANTHER | 31 | 431 | 401 | 3.2E-148 | – | |
| Gene3D | 43 | 208 | 166 | 1.5E-5 | ||
| ProSiteProfiles | 46 | 91 | 46 | 9.259 | ||
| Pfam | 47 | 92 | 46 | 7.4E-8 | ||
| SUPERFAMILY | 47 | 105 | 59 | 1.11E-9 | ||
| SMART | 52 | 92 | 41 | 0.0012 | ||
| SUPERFAMILY | 108 | 409 | 302 | 4.71E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0049600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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