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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0049800 |
| Transcript ID | LotjaGi5g1v0049800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase family protein; TAIR: AT2G24640.1 ubiquitin-specific protease 19; Swiss-Prot: sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19; TrEMBL-Plants: tr|I1MX24|I1MX24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0049800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8385798..8391561) extracted from Lotus japonicus Gifu genome v1.2.
GAAATCTTTGTCCAAATTCGAAATATTAATAGAAAAGAAGAAGAAGAAGAAGATCATAGAACAGAAACAGAAAGAAAGAA AGAAAGAAAGAAAGAAGAGAGTGAAGAAGAAGAATTCAGAAAGAAGAAGAAAACCCTAATCAATGAAAAAGCGTGCAAGA AACGATCGACGTAGATGCTTGTTGTGGCCAGTGTATCGTGGGATCTGAATTGGTTCCTGCAATTGATACTGTACGCTCTT GTTATCTGCGTTGGATTGCACGTTTTGGTCAAGAACACTGCTTCCAAGTACTTTGAAGGCGAACACCACTCTCCCTCCGC CTCAATGCCCGGCGTTCTTGCCGCCGATAACGCTGTCTGCACCGTCTGCTCCGCCCACGCCACCCGGAGATGCTCCCGCT GCAAAGCCGTCCGATACTGGTTCGTTATTGTTATTATTATTATCATGATGATGATGATGAATTGATGATTATTAATCCTT ACTATTATTGTTGTTACTATTTTTATTATTATTAGCCTTGTTATTTTTGTGATTGATATTATTACTAATTTACTATCCAA ATATGATCGTCCCGACGGTTAGGTTGAGTGGTAAGAGCTAGGGGACACAAGGGTTGGGTGAGATGAATGGTCAGGGTTCG AACCTGACTAATTTACTAACATTACTAACAACTAACATTTGCTTATAATAAAAAAAAACTATCCAATGTGATCGTTTTCA TTATGGGGTTTTGGTTGTTTTTATCTTGTGAGGGTTTCTAGGATGTTGCCTCTTGTGTTAGTTTTGGTTGGTAGTTTGTC ACCTTTAACAGAAATCATGTGTTACAATGGATTGAAATAAAATTGTTTCTTGGTGAATGTTATGAAAGTCTTGGTTTGCT GATGGAATTTAGATATTTGTGCATTTTGTTTTCATTCTGATAGGAATTTGAATTTGTTTTTAAATGGGAAAAGAAGGAAA TGAAACTGAATTTAGTCTGACTTGTGATTGGTGATTTTTTTCAGCTCAACGGAATGCCAACAGTCGCATTGGAAGTCTGG GCATAATGTAAAATGCAAATATTCTCAAGAAGCTACTGGTGCTTTGAACTCGGCTCAAAATGGGGTTACTAATCGCGGCG GGTTTAAGGCTTCCAGGGGTAAAAGATCGGGAATCGCATTGGTACCTGGTTTTGGAACTTCTAGCTCCAGGCCAATCAAG CAGCCTAAAGATGTAAGTTTCTCTTGTACTATTGACAATATCACATAATGCTTTGCTTGGTCCAGATAGTCAAAGGCTAA AGGCATCATTTAGCGCCTTGACATAAGATGCCAAAAAGCACAGACCTTAGTGAAAAAATGCATTACCATTAGAAAAAAAA ATAAGAATAGCAAACTTCAGTAAGATAGTAAGAAGCCTGAAAACTTCGAAAACTTCAAAAACTAGTTAATTTTCTAATAT GCTCACTATTAGAAGAGTTAGAAGCAGGTAGAGGCTGAGATTTCAGAGAATTTCTCTTTACCATTGATAAGACACTAAAG GCATGCCCACCTTGAACTGGAAAAACATTCCGTAGGCGAGAGAGACATGCCCTTCACTGAAGGGGCAGCACCTCAACCAG CAATAGGTGTTGACCGCTTCTAGCTCCTTGTCTCGATGCCATTGACTATATTCTTTTTACAAGGTTAGGTCTTGTATATT TTCTCTTGTGTACCGAAGTAACACATATTTGTCTTTTTCAGGCTCTTTTTCCTTACAAAGAATTTGTGAAATTTTTTAAT TGGGACAAGCCAGGATTTCCCCCTTGTGGACTCTTGAATTGTGGAAACAGGTATGCCCTTTTCAATCCAAGATTTAAATT TATGCTATTGGTAATTAGTTGTGGTTGGAGGATGTGGGGAGAAATTGACACTTATTGCAAATTTTTGCAGTTGCTTTGCA AATGTGGTTCTCCAGTGTCTCTCATTCACAAGGCCACTTATTGCCTACTTGTTGGAGAAGGGCCACCGAAGAGAATGTAA TGCCATAAATCCGACCTTTTGTTGCTTTGTGGATGTTAACTGTTTCTCATACTTATGTTTGTTGGTGGTGGCTTTTCAGG CAGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAGTCACGTTGAAAGAACCAGGCAAAGTTCACAGGCATTTTCTC CAATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACTCTGGGTTATGGAAGACAGGAGGATGCTCATGAGTTTATG AGGTTTGTTTTTCCTCACAACACTATCATTTCACTTTTTTCTAGTGAACTGTATATTGGCTGGTTTGGAAGGTTATCTAT CATAGATTTAGTTTCGTAATATGTCCAAGGTAATTTTTTTAATCCTTTTTTTTTCTTTGTAGATTTTCAATTGATACTAT GCAATCTGTTTGCCTAGAGGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAAACTTCAGGAAACAACCCTTATTCAACATA TTTTTGGTGGCCACCTTCAATCTGAGGTTAGATATCTAATCAGACTGAAAATAAAAAGCACTCTATTATTAGAATGTATA TTCCTTCCCTTTATTTCATTACATGGACAATAAAATATAGGGACTGGAGACTTTGTTGGCATGGACATATTAGATGGAAT TTGTTGCGTTTTCTTTCCCTTCCTATCTTTTGATTTTAGAAGCTAGTCTAGCCTAAGTGCTAAGAATCCATTATTTATAT TTTGATGCCTACATGGTGCCTGTCTATTTTAATCTATTAATATTTTATCTTGTGAAACCTAATAGGTCATTTGCACAAAG TGTGATAAGATTTCAAATCAGTATGAAAATATGATGGACTTGACTGTTGAAATTCATGGAGATGCTGCCTCGTTGGAGGA ATGTCTAGACCAGTTTACTGTCAAAGAGTGGCTTGATGGGGACAACAAGTATAAATGTGACGGGTAAGGTTACCCTTCCT ATTTAGTTATACACTTATAATAACTGTTATTGTTTGATTAATTGAATACGGAGGACATGAGGGTTTTATTTTTCTGCTGT AGGCAGAAAAGATCACAAGGCTGTTCTGTAGAAGTGAACAATTAACAGTAATGTAATAAATTCATAATATTGTTTGCTTT GAAACGCAATTCTAGGTTTGTGCTGTGAACTCTTGAATTTTACTGTAGTCTCATCTGTAAAAGGTGGGCTGTAGCACTTG ATTATTACAAGATATTGAGGCTGTTAGGACTTTATCCAAATTGATAATTATCAGTATACAAACCTTTAATAGATTTAATT ATGTATGTTGTATTCTGAATCAAAGTTATCTGATTTCTTGGTTTAACATTTGTTAATTAAGAATTTGGAATATGGTGATC ATATGTACTGTCATTATGCTTAAGAATTCGTAATGTATTTTGCTCAGTCAGATCCTGCTTTTAAACATGTTTTGTTGCTG CTTGCAGGTGCAAGGGCTATGTCAAGGCATGGAAACGCCTCACTGTGAAATGTGCTCCAAATATTCTTACCATCGCCTTG AAAAGATTTCAGGTCTGCGTAATTTGATTCAGACTGCCTGGCTAAGTTATTTCCATATGCTATAAGTTTTTTAAATTTTA GATATCATTTGTATCATTTCTAGTACTTCCCCCTCCGTAAATGTGCTTCAAGCAAAGTGAACTGTATGTCCCTTAAGCTG GCATGATCATAGTTCAATGCCATACTTCCAGCACATTAATTATTATTCCCTACTAGTAAAGAAAAGGTTAAAGCATCGTG TGTTTTGAACTTTTTTTTTGTCAATTTTTCTCATGATTTTTTTGGGTTTTGTGTACATGCAGAGTGGGAAGTTTGGAAAA CTTAACAAGAGAGTAGCCTTCCCTGAGACTTTAAATCTTAGCCCCTACATGAGTGATGCTGGAGATGGATCTGATATATA TAAATTATATGCTGTTGTAGTCCATATTGATATGCTAAATGCTTCATTTTTTGGTCACTACATCTGCTACATCAAGGACT TCATGGGAAATTGGTACAGGATTGATGATTCAAAGGTAGATTTCTTTGTCTCCCGATGCAACTTAGAGTATTTTTCTTTC TGGCAACTGTGTACTCTCTATATTGTACTTGAACTTTCTGTATCCTCATTTGTGCTGCATTATGTTTCTCAGGTTAGAAG TGTGGATTTGGAGGAGGTGCTTTCTCAGGGAGCGTACATGCTGTTGTATAGCAGGTATTCTTTGTGGCAATGAAGAGGCT GATACTCTCTCTCTCTCTCTCTCTCTCTGTCTCCCTCTCTTGGACTATCAAGTTCTGGTCATGTTTGCTTGTGAACCTTT CATCTTTTATTGCAATCTGTCAGAGCTTTTTCTTTTTTATTAATGGGGAATCCTATGGCTTGTGGTATATTCAACGTTAA CTAGTTTGCTTAGATATTTTAGATTGGGTGTTTAGTTTTGCATTCCAATGTGTAGTGCTTTTTAGAATGAAAAGCAATTG TAACTTTCTCACTGGAGTGACAAATATTGTTTGATATTATCGTGTACAGGTGTAGTGCCCGGCGATCAAGCCTACAAATT CAAACTAATGAGTCTTCAGGGATAGCAGAAATGCATACAATGGACATGAAGCCTTGCAAAATTGATCAAGCTGAATGCCT CTCAAGTAAGACTTTGACCTGCAGTCAAGGTTGTGCGTTTGTTGCATCTGATACTAGTTCAGAATTGAAGGTTTCTTCTG ACTGTGAATTCGAGTCTTCCACTGGATTGAACTCAGAAGGCGAAAGCCAGCCCTCTGAGGTTATTGACACTAACACTATT AATATTAAGTCAGCTGACACTGCAAATGAGATTTCTTGTAGTGCTGTTGAATCGTCTTATATGCCTATTTTTCAAATTGT CCAAGATTTGGGGGATGTAGATATGGGGAGATCTTTAGAAGAGACTTCAGGCGGCACACAAGAGGAAGATGATGCTGCTA TGGCTAGGTCTGGTCCTTCTCTGGGTTTATCAAATGACTTCTCTTTCTTGGATAAGGATTCTTCTGTTTTGACTGATTCT CAAAATGTGGAAGATTCAGAACTAAGAGATGTGAATAAATGCAGGTCATTAACTGCTACGGATAATGCATATAATGGCAC TGGACATGTCAGTGAAAATAAATCAGCTATTCCACTTGAAGAGTCTGGTACACTAATTTCGAGTTTTGGTTCTTTTCTCA CTGAAAGTGACAAAGGAAATGGAATTAATAAAGTGGAAATATCGGCAGACAAGTAAATAATGTAGGTGCAGCTCTATCTC TCTTTCATTCCTTCATATCATTTATCCCATCATCTAAAAGAGGTGGTGAGTTGGGAAATTTTTGTCTGGGGTTTCATTAT TTTGCAGGAACCTTGGATCTTATTGTAACTTTTCTAGATGGATTATCTAATTTAATCATAATGATAGAAAATAACTTATT TGTCCTTATTTCCCTTCCACTCTGTACATAAAGAAAAGTATAATTCTTTTATTAGTAACTTTGAATGCATATATGCTCAT CATATCACTAATGTCTAAGCTTTGTGGGGAAAATGCAAACACAAGGATATGGACATTGTATTGTTACTGGAAAAGGTTGT TTTGTGTTTGTTCTTGGAAGGTCTAATTTTGACCACTAAAGACATGAATTACAGAACCGGTGGGTATTGGAAGTGAATCT ATTCATGTTTAATTGACTAATTGGAAGAAGTTCCTGATCTTGAAAATTTCACTCAAAGGGTATTTTTAGTTGAAAAATTG AGTT
CDS sequence (LotjaGi5g1v0049800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTTGTGGCCAGTGTATCGTGGGATCTGAATTGGTTCCTGCAATTGATACTGTACGCTCTTGTTATCTGCGTTGG ATTGCACGTTTTGGTCAAGAACACTGCTTCCAAGTACTTTGAAGGCGAACACCACTCTCCCTCCGCCTCAATGCCCGGCG TTCTTGCCGCCGATAACGCTGTCTGCACCGTCTGCTCCGCCCACGCCACCCGGAGATGCTCCCGCTGCAAAGCCGTCCGA TACTGCTCAACGGAATGCCAACAGTCGCATTGGAAGTCTGGGCATAATGTAAAATGCAAATATTCTCAAGAAGCTACTGG TGCTTTGAACTCGGCTCAAAATGGGGTTACTAATCGCGGCGGGTTTAAGGCTTCCAGGGGTAAAAGATCGGGAATCGCAT TGGTACCTGGTTTTGGAACTTCTAGCTCCAGGCCAATCAAGCAGCCTAAAGATGCTCTTTTTCCTTACAAAGAATTTGTG AAATTTTTTAATTGGGACAAGCCAGGATTTCCCCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGT TCTCCAGTGTCTCTCATTCACAAGGCCACTTATTGCCTACTTGTTGGAGAAGGGCCACCGAAGAGAATGCAGTTGTAATG ATTGGTGCTTTCTATGTGAATTTGAAAGTCACGTTGAAAGAACCAGGCAAAGTTCACAGGCATTTTCTCCAATGAATATT CTCTCTCGTTTGCCTAATATTGGTGGTACTCTGGGTTATGGAAGACAGGAGGATGCTCATGAGTTTATGAGATTTTCAAT TGATACTATGCAATCTGTTTGCCTAGAGGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAAACTTCAGGAAACAACCCTTA TTCAACATATTTTTGGTGGCCACCTTCAATCTGAGGTCATTTGCACAAAGTGTGATAAGATTTCAAATCAGTATGAAAAT ATGATGGACTTGACTGTTGAAATTCATGGAGATGCTGCCTCGTTGGAGGAATGTCTAGACCAGTTTACTGTCAAAGAGTG GCTTGATGGGGACAACAAGTATAAATGTGACGGGTGCAAGGGCTATGTCAAGGCATGGAAACGCCTCACTGTGAAATGTG CTCCAAATATTCTTACCATCGCCTTGAAAAGATTTCAGAGTGGGAAGTTTGGAAAACTTAACAAGAGAGTAGCCTTCCCT GAGACTTTAAATCTTAGCCCCTACATGAGTGATGCTGGAGATGGATCTGATATATATAAATTATATGCTGTTGTAGTCCA TATTGATATGCTAAATGCTTCATTTTTTGGTCACTACATCTGCTACATCAAGGACTTCATGGGAAATTGGTACAGGATTG ATGATTCAAAGGTTAGAAGTGTGGATTTGGAGGAGGTGCTTTCTCAGGGAGCGTACATGCTGTTGTATAGCAGGTGTAGT GCCCGGCGATCAAGCCTACAAATTCAAACTAATGAGTCTTCAGGGATAGCAGAAATGCATACAATGGACATGAAGCCTTG CAAAATTGATCAAGCTGAATGCCTCTCAAGTAAGACTTTGACCTGCAGTCAAGGTTGTGCGTTTGTTGCATCTGATACTA GTTCAGAATTGAAGGTTTCTTCTGACTGTGAATTCGAGTCTTCCACTGGATTGAACTCAGAAGGCGAAAGCCAGCCCTCT GAGGTTATTGACACTAACACTATTAATATTAAGTCAGCTGACACTGCAAATGAGATTTCTTGTAGTGCTGTTGAATCGTC TTATATGCCTATTTTTCAAATTGTCCAAGATTTGGGGGATGTAGATATGGGGAGATCTTTAGAAGAGACTTCAGGCGGCA CACAAGAGGAAGATGATGCTGCTATGGCTAGGTCTGGTCCTTCTCTGGGTTTATCAAATGACTTCTCTTTCTTGGATAAG GATTCTTCTGTTTTGACTGATTCTCAAAATGTGGAAGATTCAGAACTAAGAGATGTGAATAAATGCAGGTCATTAACTGC TACGGATAATGCATATAATGGCACTGGACATGTCAGTGAAAATAAATCAGCTATTCCACTTGAAGAGTCTGGTACACTAA TTTCGAGTTTTGGTTCTTTTCTCACTGAAAGTGACAAAGGAAATGGAATTAATAAAGTGGAAATATCGGCAGACAAGTAA
Protein sequence (LotjaGi5g1v0049800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVVASVSWDLNWFLQLILYALVICVGLHVLVKNTASKYFEGEHHSPSASMPGVLAADNAVCTVCSAHATRRCSRCKAVR YCSTECQQSHWKSGHNVKCKYSQEATGALNSAQNGVTNRGGFKASRGKRSGIALVPGFGTSSSRPIKQPKDALFPYKEFV KFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRRECSCNDWCFLCEFESHVERTRQSSQAFSPMNI LSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLEEFGGEKAVPPKLQETTLIQHIFGGHLQSEVICTKCDKISNQYEN MMDLTVEIHGDAASLEECLDQFTVKEWLDGDNKYKCDGCKGYVKAWKRLTVKCAPNILTIALKRFQSGKFGKLNKRVAFP ETLNLSPYMSDAGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFMGNWYRIDDSKVRSVDLEEVLSQGAYMLLYSRCS ARRSSLQIQTNESSGIAEMHTMDMKPCKIDQAECLSSKTLTCSQGCAFVASDTSSELKVSSDCEFESSTGLNSEGESQPS EVIDTNTINIKSADTANEISCSAVESSYMPIFQIVQDLGDVDMGRSLEETSGGTQEEDDAAMARSGPSLGLSNDFSFLDK DSSVLTDSQNVEDSELRDVNKCRSLTATDNAYNGTGHVSENKSAIPLEESGTLISSFGSFLTESDKGNGINKVEISADK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 13 | 32 | 20 | - | – | |
| Phobius | 33 | 719 | 687 | - | – | |
| Gene3D | 55 | 106 | 52 | 5.4E-12 | – | |
| SUPERFAMILY | 59 | 103 | 45 | 1.33E-11 | – | |
| PANTHER | 60 | 573 | 514 | 2.5E-227 | – | |
| PANTHER | 60 | 573 | 514 | 2.5E-227 | – | |
| ProSiteProfiles | 62 | 99 | 38 | 12.069 | ||
| ProSitePatterns | 62 | 99 | 38 | - | ||
| Pfam | 62 | 99 | 38 | 7.7E-9 | ||
| Gene3D | 168 | 485 | 318 | 5.9E-86 | – | |
| SUPERFAMILY | 169 | 481 | 313 | 7.85E-86 | ||
| CDD | 172 | 477 | 306 | 7.78928E-159 | – | |
| Pfam | 173 | 476 | 304 | 2.6E-43 | ||
| ProSiteProfiles | 173 | 479 | 307 | 48.801 | ||
| ProSitePatterns | 174 | 189 | 16 | - | ||
| MobiDBLite | 604 | 626 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi5g1v0049800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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