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LotjaGi5g1v0050400.9

Overview

Field Value
Gene ID LotjaGi5g1v0050400
Transcript ID LotjaGi5g1v0050400.9
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description Protein phosphatase 2c, putative; TAIR: AT4G31750.1 HOPW1-1-interacting 2; Swiss-Prot: sp|Q8RXV3|P2C59_ARATH Probable protein phosphatase 2C 59; TrEMBL-Plants: tr|A0A0R0GC70|A0A0R0GC70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:8497306..8502306) extracted from Lotus japonicus Gifu genome v1.2.

ATGATAACTTGGAACCTTTTGCACGCAAGAATAAGCTTTACACACACAATCCTGCTATTATTTTTCCTTCATTTTTTCGT GCTGGGCAAGGAAATTGTATCTGGGTACCCTGAATATTCAAGCTTTGATATGGGTTACCTCAACTCAGTTTTGTCCTCTT CAAGCCAGGTTCATGCTGCTGAAGATTCACCCGTTAGCGGTGGAGGCCTCAGGTTAATATCCATCTTTTTATAGATCTAG AATTGTGTTTAATGGTTGCAGTTTTTGTTGTTGGTTAATGTCATTAATACTTTGTAGTTTTGTGTTGATTTAGCTAGACT TCCTTTATATCTTGTGTCTTCAGGTCAATTGAATGAGATGTTTTGACATGGTTTATTATGGTTTGTTTTACAGTCAGAAT GGCAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCCTCAATGGAAGATTTTTATGAGACAAGAATTGATGG TGTTGAGGGTGAAGTTGTTGGCCTTTTTGGAGTTTTTGATGGTATATTATATTTACACAATTCTCTTATATCCATGCTGC ATATTTAAGAAGATTCTAACATGAGGAACTGGTTGTAGTCATACATTGATTGGACACATGATGAACTATTGCCCACAGTA ACGATAAAAATGATGATCTCTTTCTTTATTTTGTTTCTATCCATGGATTTCCCTTTTTAAGTTACCAGGAAATTAATTAT TCCATTTGACTTAGTAGTGCCATATTGTTGAGAGGTCTCACATTGACTAGAAATATGACCAAAATAGTCCTTATCAAGGG TAGAGCAACCCTCACCCCTAAGCTAACTTTTGGGGGTAGAGTTATGCCTAACCTGAATTCTAAGATGATGATATCAGAGC CTATCCGAAATCTCTTTATTGGAGACTACCCATATATGGGCAACCACAGATGTCCAATCCTGCAAAATTTATGCTCCAAA TGTCCATCCCTAGGCGTGAGAGGGTGTGTTGAGAAGTCTCACATCGACTAAAGATATGGCCAAAATAGTCCCTGTAAAGG GTAGAATAGCCCTCACCTTTAAGCTATAGCTTTGGGGTAGAGTTAAGCCTAACCCGAATTCTAAGACAGATGAAGATGCT TGACAATGACATGGACTCATGCATAATGAGGAAGGTCTAGATTTGTTACATTTATGGTCTCATCCTGATCCCCATGTCAG CATATCTGATTTTGGATTGTTTGATTTTTCTGATTCTCTATTGTACTGTTTCCTGAACACAATAAAGGAAATCTCTCTGG AGGTTAATCATCTAAGTAATATGTCTCAGTATTAATTTGATAGGCTTCTCCATTGTCTGGTACTTTCTCTTTCTAGTATT TCTCGTTGTGTTGACGATTTTTCAATAATTCCTTATAAGAGCAATTATGAGTTGCAGACTGTTTATTAATATGGCATCAC AGAGTATTACTTTTTTGCTATTGAAGCATGTAGGAAATATTGATTTTCCATATATAACCTATGCTTGATACTATTCTTGT TTAAAACTTTCAGGTCACGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGTAATTTGATCAGTCACCC AAAGTTTATTTCTGACACCAAATCTGCAATAGGTATGTAGTTTCCTGCATATAGCAGCATGACCTTTTTAGCCTGATGTT CTCGAATTTGTTTAATCTTGAGAATAACCCTGCTCCTACCCAACTTCTTTTTCCCACAGCTGATGCGTATAACCATACGG ACTCTGAATTTCTGAAGTCAGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGTGAC CGTTTGCTTGTTGCAAATGTTGGAGACTCCAGAGCTGTTATATGCAGGGGCGGAAATGGTAAGGCTAGTAGCTTCATATT CTTGTATTGTAAACAATGTTGTTAGGATCGGGATCTTACTTAGGATTGGGAGGGGGATGAAAGATCTTAATCGGAGGATC GTAGATTAGATCATAAGATCTCTTCTAGAAATACAAAATTATAGAACATATATATGCATAGAAAATCAAACAAATAAGGT AAACAACCTCTATATCACATCAATAAAGTAAACTTTTAAACTGAAAATTTATTAGCATGAGATCACATAAGTCATAATAT AACTTTTGCATAAGAAACATAAGTTCATAACGTAGAACTTATACTGAAAAACCCAAAAGAACATAATCTAATTGTCCAAT TCCACTACGCTACTACTCTAGAACTATTTTTTCTTCAATGGAAACAGCACTAGCAGAGACAAGAACAAATCAGCTCTGTA GGCAGAGGAAAACAGTAGCACTGCATGTGCAGGGTGAAGAATACAGAGGGTCCAAACTTCAAATTTAGAAGTTGGCTCGT AGAATAGAAAGCTTTGACTTTTCCTTATGAAGAAGAATATTGTGGTGAAAGAGGGATGAGGAGGATCACGATTATCATTC GTTGTGTTAGGTTTTAGTTTTTGGTTGTGGGGTTCGAATTGCGATTTGTAATGGGTGAAAGAGTGGCAAAATCGGACTGT AAAGCAGGTCTCCCGATTCATGATCCGGAAGCCTAGCAAGAGTGGTAATCGGATTGGATCTAGGATACTACGATCTTACA TGAAAGATCACGGTCCTGCTTGCAGTCCTACCTATTCATAATTGCCATCTTGATCGGAGAGCTCTACTTGGATCGCAAGA TCGTGCAATCTCACATTCAAAATTGCGATCTTGACAGCATTGATTGTAAATACATTCTTGGTTGTAGTGTATTACATATA TTATTTCACATGATTGTAATTTTCTGATTGCTCAGGAGGTCATAATAATTGTGGTTGTTAAATGTATCTGGAAAATTTTA TGATGCCAGCCCCATGCTTTTTTCTTGGTTCCTGCTGTTGTTTTATGTAGACTAGTGTCATCTCTATTGTGGCTAGAGTC TATTGAAGTTCCTAATATTTGTATTGTGAAAACAAGTTTAAAGGCAGTAACTGTCTTGTGTTTGTCAACTCTGTCGTAAT TTTTACAATTGTTTGTCCACTTCTCTCCTTTGATTTTTTTTTTCTTTCCTTCTAACTCTATGTTGAAAGTCTATCTTGGT ATAATTCACAGTTAAAATGTTAAGGATTTTCATTTGGTAATAAAAGGGTATGGGGTTGATGCTTTGGTTTATGGCAATTT ATTTTGCATCTGTTGAGAAAATCAATCCAGCCGTCTGATATGAATGATTACTTAACTAATTTAATTTTGTATTTCTGTTT CCTATATAGCCATTGCCGTCTCTCGAGATCACAAACCAGATCAAACTGATGAGAGGCAAAGGATAGAAGATGCTGGGGGC TTTGTTATGTGGGCTGGTGAGTTCATTGAGTAGTTAGCTCTTGTAATTTGATTTCTAGATTGATTTTGTTTATCTCTATG AAATACTTAGTCTTAAACATTACATTTATAGGAACTTGGAGAGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGA TAGACTCCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGTTTGTTTCTCATATGGTGACATGCACTCTTGGATTT TTTTTCAAATATTATTCGCTTCATTTTAATTTGTCTCTGCTGTATAGGACGCATGATCTAATATATGGTTTATAATGAAC AACATCATGTCAATAAATTGAAGAAAATTCTGCCACAAATGACAAGATGAAAAATAATATCACGCTTTTAACATGCTTAA CTATCCTAAAACATAAACACAGTTCAGAAAGAACTTCATACATATAGGCTTTTCATTGGAACTACTAATCCCCAGAATTT CTTATTTCAAGATAAAAATTGACCGATTTGCATGAAGGGTATAGCCATGCATCGGGTTGTAATAGTTACTTGAAATATAA TATGAAAATATTCATGTGTCTTCACCTAATTGCTTAAGCTTTTGGGATAGTTGGTTCATGACATGGTTTTAGAGCATCTA TGACCAAGTGGGTTTGTACATGGCCCGCGATTCATGTTGAGGGATACTTGCATAGTTGGTTCATGATAATAATATACATA TTTGTCTATGGCATACTTAAATAATTGAAATTCCTAGAACTTGTGAAGGTGAAAAAGTACATTGTAGTGATAGATATACT TATTCTGCAATTAGCCTTAAACAGTAGCTTTCTTGAGCTTCTTGAAGAAAAATGCTTCTAACCATATGAATTATTTTGTG ATGTAACTGGTCTCTACACAAAAGACATTCCTCCTGATTGGTCGTTATTCTTGTTCAACTGGCTTTAGGTCTTTTTTTGG CATCCTTTTTCCTTTGTATATTTTAGTTTTAAAATGGTTGTGGTCTTGCAGGAAGAAAAAGTGGACGGATCTCTTGAGTT TCTTATTTTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGTTTGCAATGATTTTCGCTTCTTCCACTTTCTGT TGTCAGTGGTTGAAGTATTTAATGATTTCTTTATTCAAAGTTATTCTCTAGTAAAACCACCTTACATGATTTCCTATACA AATATTTGAAAGGACAAAATGAAGTGAAAATAAGGTAGCTTTTTGCAATTATTGGTCAAAAAATTGAAATAGGAAGATAG AGTATTAATCAAAACCCATGAGTTGTATCTTAATAAATATGTAGCTCACCAAATTTAGAAAGCCAAACTCTGAAGTATTC GTCCATGCTTGAAAACTTTCTACAATTGATTATAAAGCCAGCAATTCTGGGTAGATGTTCGTTGAGTAGCTTATGGGTTA CAGAATTGTGTTGCCTAACTCAATTTTTTCATCTTTCTCCAGGAAGCTGTGGCTATGATTAAACCAATTGAGGATGCCGA GGAGGCAGCAAAGAGGCTGATGCAAGAAGCATATCAGAGAGGTAGTTCTGACAACATTACTTGTGTTGTTGTTCGCTTCG TGGTGAACCAAGGCGCTTCATCTCGCAGTACCTCTAGCTAA 

CDS sequence (LotjaGi5g1v0050400.9) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAACTTGGAACCTTTTGCACGCAAGAATAAGCTTTACACACACAATCCTGCTATTATTTTTCCTTCATTTTTTCGT GCTGGGCAAGGAAATTGTATCTGGGTACCCTGAATATTCAAGCTTTGATATGGGTTACCTCAACTCAGTTTTGTCCTCTT CAAGCCAGGTTCATGCTGCTGAAGATTCACCCGTTAGCGGTGGAGGCCTCAGTCAGAATGGCAAATTCAGCTATGGGTAT GCTAGCTCCCCTGGCAAGAGATCCTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAGGGTGAAGTTGTTGG CCTTTTTGGAGTTTTTGATGGTCACGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGTAATTTGATCA GTCACCCAAAGTTTATTTCTGACACCAAATCTGCAATAGCTGATGCGTATAACCATACGGACTCTGAATTTCTGAAGTCA GAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGTGACCGTTTGCTTGTTGCAAATGT TGGAGACTCCAGAGCTGTTATATGCAGGGGCGGAAATGCCATTGCCGTCTCTCGAGATCACAAACCAGATCAAACTGATG AGAGGCAAAGGATAGAAGATGCTGGGGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGTGTTCTTGCTGTTTCT CGTGCATTTGGTGATAGACTCCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTGGACGGATCTCT TGAGTTTCTTATTTTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTGGCTATGATTAAACCAATTG AGGATGCCGAGGAGGCAGCAAAGAGGCTGATGCAAGAAGCATATCAGAGAGGTAGTTCTGACAACATTACTTGTGTTGTT GTTCGCTTCGTGGTGAACCAAGGCGCTTCATCTCGCAGTACCTCTAGCTAA 

Protein sequence (LotjaGi5g1v0050400.9) extracted from Lotus japonicus Gifu v1.2 Proteins.

MITWNLLHARISFTHTILLLFFLHFFVLGKEIVSGYPEYSSFDMGYLNSVLSSSSQVHAAEDSPVSGGGLSQNGKFSYGY ASSPGKRSSMEDFYETRIDGVEGEVVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYNHTDSEFLKS ENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVS RAFGDRLLKQYVVADPEIQEEKVDGSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEEAAKRLMQEAYQRGSSDNITCVV VRFVVNQGASSRSTSS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 35 35 -
SignalP_EUK 1 29 29 -
Phobius 1 16 16 -
TMHMM 7 29 23 -
Phobius 17 28 12 -
Phobius 29 35 7 -
Phobius 36 336 301 -
PANTHER 44 326 283 3.8E-175
PANTHER 44 326 283 3.8E-175
SMART 67 321 255 3.1E-99
Gene3D 69 328 260 4.0E-90
SUPERFAMILY 71 323 253 2.75E-80
CDD 76 323 248 6.07484E-97
ProSiteProfiles 77 323 247 58.117
SMART 88 323 236 1.3E-4
Pfam 105 316 212 2.2E-67
ProSitePatterns 108 116 9 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0050400.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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