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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0053400 |
| Transcript ID | LotjaGi5g1v0053400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Major facilitator superfamily protein; TAIR: AT5G10820.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6; TrEMBL-Plants: tr|K7MND7|K7MND7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0053400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9120311..9124927) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAGGTCAACTTGTGTTCGCTATTCCATTCCATCCCTCATTAGTCCCAGTCCCAGCTGCTACCAGCCTACCATCAACC ACAGTACCACACTCACAAATCCAACAATCTATTCCAGTTCAATTGAGATCAAATCTTTCTATCTCAGCCACACCAAGATA TAAAAAGAAAACACGAACTTCGTGTTCGTTATACCATCCCATCAGTCCCCTCTGGCTCACAAGTCACAAGTTATTAATAA ATCAATTAAAAATATCAACAAAAATAGTAAAAATGGAAACATGCTCCATAACTTTGACTTCAAAACCACACTTCCAAATT CAACGATCAACTCCCAAAGATCTTCTTTCCACAGTATCCAAGTCAAACCTTGCATCTCATCATCCAATCCAATATCAAAC AAACTCAGATCCATCCATGTCCTCAAAATCCCAAACAGCCAAAACATGAACAACAAACACTTCACCACATCAATGTTCAC ATAACAAACACAATCAATCAAAATTACAAAGCCATGACCACAGCACCACCAGACCCAAACCAAAACACTTCAAAGAAAAC CAAGAACCTCCTCTGGACCCTGACGCAGCCAGTGGAATGGGTTCGGAAGCTGACGTGGCAGCTGAACCCAACTTTCATCG CCGGCGTGTTCATCGTGTACGGGGTGGGGCAGGGCTTCTCCGGCTCGCTTTTCAGGGTGGTTACCGACTACTACTGGAAA GACGTGCAGAAGCTTCAACCCTCCACAGTCCAGTTCTACTTCGGCATTTACTTCATCCCGTGGCTCCTCAAACCGCTATG GGGAATCCTCACCGACGCTTTCCCCGTCGCCGGGTACCGCCGCCGCCCCTACTTCGTCATCGCTGGAGTTCTCGGCACGG CCTGCGCTATCGTCGTCGCGCTCTGGCAGGGACTCGCGGCTGCCGGAGCGGTGATCTGCTTCGTTGGAGTTTCCGCGTCG CTCGCCATCGCGGATGTTACCATTGATGCGTGTATTGCGAGGAATAGTATCGAGGTTCCGTCACTGGCGCCGGAGCTGCA GAGCCTCTGCGGGTACTGCGCTGGGATCGGGGCTCTTGTTGGATACCTTGCTAGTGGCTTCTTCGTTCACCATCTTGGTC CCCAGGTCAGAAACTAAGAAATTTTGCAGAATTTTTTGTTGTTGGAATAATTCTCTAGAATTGAAGAATTTCACAATTTT AGTGAAAAGTGAAAGTGGATGTCAATATTTTTCTGCATAGTTTAGTGCCAAAAATATTTTCTGATTGATATGGTCTTTTT TTTTAAACCCCAATGGAGAACTGTAATCCATAAAATATATGAATATTTGTAGTAAAATACAAAAATATAATATTGTTAAA ATTCTAATTTCTTACTTTCAAAACAAATTATAATTTCTTAAATTTCAATTTTATATTATATTTTCCAATTCGCATATTAG AACAGCCATACTCATAAGTCATATCTCATTTTACCATTTAATAGAAGTTCCGCCTGAATTGGATAGATGAAGGTTCACGA ATCAATCTTTAGAGGAGAAATTTGACCGATAAAAAAAAAACCTTGAGTTTGCCTAATGTAAATTTTGTCAAGGACTTGTA CAAAACTTTTAAAAAATTTAGCATGTCTGAAAACATAATTCAAAGCTAACTTTATCATAGGTTATTTATTTATTCAAATA AATTAAAAGCTTAATTTTAAATAGGTAATATATTTTATTAATAGTTTAAAAACCGATATGGAAATTTTTATATGACCTGA AGTGTTTGTCCAACCTATTTGAAAATAGGAGAAGATTTCAATCCACTTAATCAGTAACAAATTATAGATATGTGGTGAGT TCTTAATTTTTTTTTTCATTAAGTGTCATTTTGGTAAATCTTCAATCTGAATCTGATTATGTTAATTTATTCTTATACTG AATTTTAACTGTCTCATGGATGGAATATTTGTGTGGTCATTTTTAGGAGTCACTTGGTCTAATGGCACTTTCTCCTGCTT TGACAATTGTGCTGGGTTTTGTGATGTATGAAAACAGAACCAGTGGCTCGCATAATGAAAAGAAAGAGGTTAGAAAACTA TTCTTTGACTTTTTGTGCTAGATTTAGCTTTTCACCTTACTTGTTATGTGGACCTCCTTTAAAACATGAGCAGTATTCAC ATGTCATTGTTTTGTTGAATAAAAGTTAGTTTTATTGGAGGGTTTGACTTTGCTGTCAAGTTTCTTTTGTATTCTTGCAA ATCATTTTACTATTTATAAGTTATATCAAGAGTTGATAACCAGAAAGCTAATTTTATATCTGTTGGATTTGAACTAATCA ATTGTGTCAAGATCCTGAATTTTTTTTTTAAATATTGTAAAAAAAATAAATATTTACCAAAATATTGTATTTTGATAAAT ATTTGCCAATCTATGGTGGTTTTGGCCGTGTAGAAGTAAGAATTTTCACAGTCAATAATTACATCATCATTATCTCGCCT AGATGATTGACAAAAAGTAGTAAGTTTCTTAGTTTGAAAGATCCTTTATCTGTATATTTAGAATGGATGTAACTATACAC AAGATCTTGCAGGTGGCGGTTGAGAGTGTAGGAATGACAATTAGAAGCATGCACAAAAGAATGAAGTGTCCTCAAGTGTG GAGGCCCTCTCTTTACATGTTCCTTGCCTTGTCTCTTAATTTAAGCATTCACGAAGGCCATTTTTACTGGTACACAGATC CAAAAGCTGGTCCTGCATTCTCTCAGGTATCTTTCATTTTGTTTGCTGGTGATTAATTGCATGTTTTGCAATCCTTCTAC CATTGATTTTAAAGTCAAAATTAATTGTGGGGAGAAACTTTTATGAGTGCAGGTTTAGAAATCCTTCTACAATTGGTTTT AAAGTCAAAACCAATCGTGGGGAGAAGCTCATGTGTGCCAGAATTGATTTTGAGGAGAAATAAGTTGATCTAGTACCTTC TGAGCTTTGGAGTTGATTATCAAGATAGAGAAGTTGTGTACCAGTAAAAATGATCTTCTTGAGTGCATAGCTCTAATATC ATGAGAGAATGCACTCACTTATAGCGTGTTTTGATAAATTTCTCTTTCATTATAATTAATTCTAAAATCTAATTAAAAGC TACTCACAAAAGATTCTTCCCAAAATTGATTCTGGTTTTAAAATCAATTACTGAAAGATTCCAAAACATGCACTTAGTCA TGTTTAAATTCAAACATGCCATTTTAGCAATGCACTTCTTACAGAGCTTTCTCCCTCTGAATGCAGGAGTTTGTTGGGTT GATCTATGCATTTGGTTCAGTGGCCTCACTACTAGGGGTGCTAATCTACCAGAAGACTCTAAAAGACTTTGCATTTAGAA ACCTTTTATTCTATGCACAGCTCTTCTATGCCATATCTGGTGTGCTCGACCTGATCTTCATCCTACGCTGGAATCTGATC ATAGGAATCCCGGACTACTTCTTCGTTTTCATGGAAGAAACCGCCACAAGAATCACAAGCAAAATCAGATGGATGCCCAT GATGGTGCTGAGCACCCAGCTCTGCCCGATCGGCATTGAGGGCACCTTTTTCGCGCTGTTGATGAGCATCGACAGCAGTG GTGCCCTCATATCCAAATGGGGAGGCGGGTTGCTTCTTCGGCTCCTCCATGTCACTAGGACCAACTTTACAAATCTGTGG CTCGCTGCTCTCATAAGAGACTTATTGAGATTTGCTACACTTGCTTTGGTTTTTCTTGTTCCTAAGGCAGGTCAGTATGA GGGACTGCATCTTTCTGAGGTTTATGAAAAACACACCAATGATCATGATCATGCAAGCGAAGAGACCTTGGAGCTTGTCC CCATTATTAGCAGAACTGAAGTTTAGATAAATTTTGTTGCAATTCATATACACATGCCGGACTTTCAGATATACACAATT TTTTATATAGATAATGCTGATTAACTCGAATGATGTGCACAGGAATGGCTTTTTTTTAAGAAACAATTCTAAGGATATAC AAGCACTTCTAGAACCATCACATTGGTAAATCAGAAAACCTGGGTAGCTGGTTAGAATGACAGCATGGTTTGATTCATGC ATAAATCTTCCAAAGTTACTTTTTAAGTTTATGCTTGTAAAACTTTTTTTTTTAAGTAAAAGGACTTTAATTCATTCTAT CTCCCAAGCTCCATTCACGTTTGTTTCTTGGCGCTGATGATTTTTTGAATTGGTAAAACTTGGTGGTGGAGTGCTCAATG TTAAAATGTGTTGTTGAACACATTCCATCTGCCCGAATGTTCCAATTTCTTAAGATCTTATCAGAAGATCGATGATGCTA ACTGTATTATATGAAGATTGAAGACTGAGCTGCTGAATGAATGAAGAGCATCCAGAAGCTGCATCTTTGCACTAAAAGAT TATTGAAGATTTGAAGTAAGAAGAGAGTCCGAACAAGTGTATATATATCATGTTTCTTGTTGGAATGTCATGCTATGCTA TATGTTAGGGATTTGGGTTTAACACCCCACCCATGAGGCTTCCCACCCCACTTTTATTGAAAACGGGATTTAAAAAACCG TTTTGTATTTTAGCATATGTGGCACATTTTCAATCATTCATTGAATACTAAAAAAAT
CDS sequence (LotjaGi5g1v0053400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCACAGCACCACCAGACCCAAACCAAAACACTTCAAAGAAAACCAAGAACCTCCTCTGGACCCTGACGCAGCCAGT GGAATGGGTTCGGAAGCTGACGTGGCAGCTGAACCCAACTTTCATCGCCGGCGTGTTCATCGTGTACGGGGTGGGGCAGG GCTTCTCCGGCTCGCTTTTCAGGGTGGTTACCGACTACTACTGGAAAGACGTGCAGAAGCTTCAACCCTCCACAGTCCAG TTCTACTTCGGCATTTACTTCATCCCGTGGCTCCTCAAACCGCTATGGGGAATCCTCACCGACGCTTTCCCCGTCGCCGG GTACCGCCGCCGCCCCTACTTCGTCATCGCTGGAGTTCTCGGCACGGCCTGCGCTATCGTCGTCGCGCTCTGGCAGGGAC TCGCGGCTGCCGGAGCGGTGATCTGCTTCGTTGGAGTTTCCGCGTCGCTCGCCATCGCGGATGTTACCATTGATGCGTGT ATTGCGAGGAATAGTATCGAGGTTCCGTCACTGGCGCCGGAGCTGCAGAGCCTCTGCGGGTACTGCGCTGGGATCGGGGC TCTTGTTGGATACCTTGCTAGTGGCTTCTTCGTTCACCATCTTGGTCCCCAGGAGTCACTTGGTCTAATGGCACTTTCTC CTGCTTTGACAATTGTGCTGGGTTTTGTGATGTATGAAAACAGAACCAGTGGCTCGCATAATGAAAAGAAAGAGGTGGCG GTTGAGAGTGTAGGAATGACAATTAGAAGCATGCACAAAAGAATGAAGTGTCCTCAAGTGTGGAGGCCCTCTCTTTACAT GTTCCTTGCCTTGTCTCTTAATTTAAGCATTCACGAAGGCCATTTTTACTGGTACACAGATCCAAAAGCTGGTCCTGCAT TCTCTCAGGAGTTTGTTGGGTTGATCTATGCATTTGGTTCAGTGGCCTCACTACTAGGGGTGCTAATCTACCAGAAGACT CTAAAAGACTTTGCATTTAGAAACCTTTTATTCTATGCACAGCTCTTCTATGCCATATCTGGTGTGCTCGACCTGATCTT CATCCTACGCTGGAATCTGATCATAGGAATCCCGGACTACTTCTTCGTTTTCATGGAAGAAACCGCCACAAGAATCACAA GCAAAATCAGATGGATGCCCATGATGGTGCTGAGCACCCAGCTCTGCCCGATCGGCATTGAGGGCACCTTTTTCGCGCTG TTGATGAGCATCGACAGCAGTGGTGCCCTCATATCCAAATGGGGAGGCGGGTTGCTTCTTCGGCTCCTCCATGTCACTAG GACCAACTTTACAAATCTGTGGCTCGCTGCTCTCATAAGAGACTTATTGAGATTTGCTACACTTGCTTTGGTTTTTCTTG TTCCTAAGGCAGGTCAGTATGAGGGACTGCATCTTTCTGAGGTTTATGAAAAACACACCAATGATCATGATCATGCAAGC GAAGAGACCTTGGAGCTTGTCCCCATTATTAGCAGAACTGAAGTTTAG
Protein sequence (LotjaGi5g1v0053400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTAPPDPNQNTSKKTKNLLWTLTQPVEWVRKLTWQLNPTFIAGVFIVYGVGQGFSGSLFRVVTDYYWKDVQKLQPSTVQ FYFGIYFIPWLLKPLWGILTDAFPVAGYRRRPYFVIAGVLGTACAIVVALWQGLAAAGAVICFVGVSASLAIADVTIDAC IARNSIEVPSLAPELQSLCGYCAGIGALVGYLASGFFVHHLGPQESLGLMALSPALTIVLGFVMYENRTSGSHNEKKEVA VESVGMTIRSMHKRMKCPQVWRPSLYMFLALSLNLSIHEGHFYWYTDPKAGPAFSQEFVGLIYAFGSVASLLGVLIYQKT LKDFAFRNLLFYAQLFYAISGVLDLIFILRWNLIIGIPDYFFVFMEETATRITSKIRWMPMMVLSTQLCPIGIEGTFFAL LMSIDSSGALISKWGGGLLLRLLHVTRTNFTNLWLAALIRDLLRFATLALVFLVPKAGQYEGLHLSEVYEKHTNDHDHAS EETLELVPIISRTEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 8 | 492 | 485 | 1.3E-245 | ||
| PANTHER | 8 | 492 | 485 | 1.3E-245 | – | |
| TIGRFAM | 26 | 457 | 432 | 8.8E-65 | ||
| Gene3D | 35 | 453 | 419 | 2.3E-19 | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 41 | 60 | 20 | - | – | |
| CDD | 44 | 452 | 409 | 1.27735E-132 | – | |
| SUPERFAMILY | 46 | 443 | 398 | 9.16E-22 | ||
| Pfam | 53 | 230 | 178 | 5.4E-39 | ||
| Phobius | 61 | 79 | 19 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Phobius | 80 | 100 | 21 | - | – | |
| Phobius | 101 | 111 | 11 | - | – | |
| TMHMM | 112 | 131 | 20 | - | – | |
| Phobius | 112 | 131 | 20 | - | – | |
| Phobius | 132 | 136 | 5 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 137 | 157 | 21 | - | – | |
| Phobius | 158 | 177 | 20 | - | – | |
| Phobius | 178 | 201 | 24 | - | – | |
| TMHMM | 178 | 197 | 20 | - | – | |
| Phobius | 202 | 206 | 5 | - | – | |
| TMHMM | 207 | 224 | 18 | - | – | |
| Phobius | 207 | 225 | 19 | - | – | |
| Phobius | 226 | 259 | 34 | - | – | |
| Phobius | 260 | 278 | 19 | - | – | |
| TMHMM | 261 | 283 | 23 | - | – | |
| Pfam | 272 | 460 | 189 | 3.2E-47 | ||
| Phobius | 279 | 297 | 19 | - | – | |
| Phobius | 298 | 317 | 20 | - | – | |
| TMHMM | 298 | 317 | 20 | - | – | |
| Phobius | 318 | 328 | 11 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 329 | 351 | 23 | - | – | |
| Phobius | 352 | 432 | 81 | - | – | |
| Phobius | 433 | 454 | 22 | - | – | |
| Phobius | 455 | 495 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0053400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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