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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0053800 |
| Transcript ID | LotjaGi5g1v0053800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr|I3T9E4|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0053800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9174849..9183309) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTTTTCTCGCAAAAGTCTTACATTTGAAATGTCATTGTGTTATGTGCTATTCACTCCTTTTCTTTGTTTTTTTAGT TAGCAAATTTTTTTAGATGAAATGGTTGATAGTACAAACATTATTCAACAAAATGAGCATAATCTCTTCCAATATTACAT AGGAAAACCTTAAAATCAAATTATTTTGGTGCACCCAAAGATAAACCTTAAAAACCCAACACCAAAGAAACACCTCACTG CATAAATTGCAGGAAAAACCTCAAGCAACAATGACAAGATCCAAACTCGGATCAAGCACCAAACGACCAATGAGAAGACC GAAGAGAAAGAGCATCCGTGGGGACCAAGATATAGCGAAGAAAAGTCACATAACCCAATGAAAACAGAGCCATCTCGCTA TTGGAGGGGACGCAAATCAGGACAGGACATCAACCGGAAAGCAAAAGTAAGATAACAACAAGCAACCCCAACACCACCAC CGCACCACCTCTGTAGTAGGATAAGACAAGAAGAACGCTAAGGCCAGAAGGGAACCGGCCTGATCACAATTGATTTAACC CATAGAGGGAGTTATCAACCCAAAACTTCGCTCCAAGATACACAATTTCCGTGACCTGCCCAAGAACCTAAAAACACATA TCCATACAGAGATGGACAAACCAAGGAGCGAAAACCCCAACCTACCACCATTGTCAGCTTCAAACCACATGTTCTGCCAC CACGAAGACATAACAACCCAATCATCATAAGCGTCGTGATCAAGAAAACATGAAACCCTACAAAACCCCAAAACCACCAG ATCCACGACACTCATGAAGCGGAAGCGAGTAAACAACAACGGAAGCCACTAGGAGAGGCCCTTGACGACGCATCTGAAGG TGAGGAAACCCACGAAGCAGCAAGATCGTCGACAAGGGACGCGTCGAACAGAGCAAAGATCGGCAACAAAGAGAAGAATA GGAAACCAGGGTCTTCACCGGCCAGGTCATCGCCCCTGGCATCAGAAACAGGGGGACAGAACAATTGCGACGCTGACACG CCTTCACTAGACACACCACCTCCAAGATTGACGAAGGCATGACAAAGCCACTACAACCCATGGAAGGACCCGAATCTCAA GAGGTCCGCTGCCGTAGAGACGAGCACAGCCAGATCCAGAGATCTGCCTTCTTGAACGGAAGAAGGAACAACAAGGGACG CCACCGCCGCTTTATTGGAAAATAGGGAACCAATTTGAGAGGATAACCACCGCCGAACTTTGGAAGGAAGAGATGGGTGG TGTGGTGACAGTGGTGGGGGGAGAGGTAGACAAAGGTCAGGTAGAGAGAAAAGTTAATTTTTCAACTCACTAAGACCTAA TTGACATTAAGTTGACAACATCAAGGGCTGAATTGATATATAAGTGGTAGATAACGTGTCATGTCAGTCACTTCGTTAAC GTTTGTTAATTTTTTAATATCAGGACTGACTTGACTGACGTTTTCCACTTTCAAAGACTACAAGGTGCACTTTGATAGTT TAGGGACCAACTAGTTAGGGATCAATACTTTCATCGACCAAATTTACCATTTACCCCATTTTCTTTCAAATTATTACTAT ATCTAATAAAACTATTCGTGGATACATGGTTTTTTTGTTGTTGTAAAGACTCGGGGTTCTGTAGTTCACTCCGCCGTCAC TCACTCCTTTCGTCCGCCGCTGATAGCCATCGCCGGTGAGTTTCCCCTCTCTCCATTTCCTTTCAAATATTTATACTTTA CTTCATTGCCTGTGTGTAAGAATGAGAGGTTCAGTTGGTGATAGAGTATGGGCTTATGCTTTTCAAGTTTTGGTGAACGA TATTGCTTACTATGTGATGTGCTCTTCTGCTGTATCTTGTGTTCTGTTCTGAAAATTGTAAATCTTTAAGGATGATGCCA AGTGGTGTTGTCAAGAGGTGGATTATTTTATTAAAATTTTTAGGTGTATTAGTGTTTTGAAATTTAAAGTTTTCAAGTTT TTTGGACATTATAAAGCTTGAATTTTTGTATTATTGTAGCAATCTATTACCTTGCATCACTGTCTGTTCAGCTAAAAACA ACTGGAGTTGCTTTGTCTAATCATGATTATGTGACCTTCGGCTTTCCTTGCACTGATAGTGTAACACCCACTATCAAGGT GCCAAGCAAACCAAGTGTACGTGCTAGCTATGCATTTTGCACATAACATAATTACTGCTTTCTACCTTTAAGGAGAAATT AAACATATTTTTGGGTTCATCAACATGTGGGGAAAGCTCTCTTTTTTAGTTTTATTTGTTATTTATTTTCCTCACAACAG GAAATGGTTTTGATAGTTTATATGTTTCAACCTTCAAATACCAAATTTGTTTTAATGGGTTCATCAACTGTTTTTCAGAT TGTGACTAGCAAACCTTATCAGGGACTTGCATAGTTGCTCTTATCCCCTCTGTTGCCAGTAAATATAAACAACAAATTAT TATTAGGTTATATATGGATTTGAGCTTCTCCTTTTTTTCTTTAGACCATCCTTTTAGTCTATTGTCCCTAATATATAAAC TTTCATTGTAATAGAAGTTTCATGAGTTTTGACAAATTTTGATTATAACAGGTAATCCTGTACCGAGCATCTAAGCTTCT TTTGTCTGTTAAATATGTTATACTTTGAACCTGGGGTTGTATCATAGATGTGAATAAATATTTATTTTGTGCTGAAATTG ATGTTCTGTGTCATGTTTGAAACTGTGAGAAAGCCAGTTGAACTCTTCAGACTTACTTGGCAGAGCTTGTAGTAGCTGGA ACTTGTCACTCAGTACTGCATTTTAGAGTAGCTAAAATTGCATTTTCTTTTTATCTACGTAAACTGTCAAAAGTTAACAG GTTACATCCAATAGATACATAAGGTTTCCAGATTGTACTTTTAGTCAGAAAGCTTCTCTAAACTTGGGAAGTTTCAGGAA TGGTGGGTTTATCTCTTGGTGAGCGACATTTCATCCAAGGTGGCATTGCTCAGGATCTTCGCTGTGATGGTAGAAAGAGA TTGACTTACCGGCCAATCTATGTTGAAACTGGAGTGATTCCTCAGGTAATGTATGACTTGGCACTTGCCAGGGTATCTTG ATGATTTGATCCTTGCCATCTGATTTTTTCATAGTATAAATAGCTTTAATTTGTACATTTATGAACTTCATTATAGGCAC ATGGTTCAGCTAGAATCAGAATGGGTGCTACAGAGGTCATTGCCAGTGTGAAGGTTAGATAAAATGTTTAGATTGATCTA TTCTTTCATGATTCATCACATCTTTTTGTTCAATAGTTTGAATAACTTTTTCAAATCATATCAGTTTTTATATTAACTAT GATATAGTGGCTGTATAATGCAGGCTGAACTTGGGAAGCCAAGCTTATTACAACCTGACAAAGGGAAAGTCTCTATATAT ATTGATTGTAGTTCGACTGCAGAGCCAGCTTTTGAGGTTGCATATTCTGTTGCTTATCTTCTTTGTAGTGAAGTATCCAA ACGTTCTTGTTTTCTCAAAATCATTGAACTTCTGAGTTCTGTGAAAGTTGATAGCAAAACAAATATATAATTTTTGGAAC TTTGCTCTTGCACCAAATGTAGTTAGGTTGCTTAGTTTAAATTGATAAGACAAATAAATAATCTTAGTTTCCAAACACCT ATTGATTATCTTAGTTTGTCCATATTTCTTGGGCTGGTAGGTTGAAATTCTTTTTGAACTTGGTTCCTTAGTGTTTAAAC ACCTCCCTCAAGAAATGACATGAACAAGGGATCCCTGTCACTTAGAGTGGATTTAGCCACTCCATGTAATCTCACTACCT CTTTGGCACGCATTTCAGCAGTAACTGTGTTTGCACTGTAAGGGTGTTTCAAAGGAATAAAATGACTGTATTTAAATAAG TTATCCACCAATATCATAATTTCTTCATAATTTTAATATTTAGGCAGCCCTATAATGAATGAAGTCTATGTAGAGGTCTT CCTAATTGTAATAACCACTTTTTAGGGGCTAAGTCAGAATATTTTTGTCGTTAGCAAGTGTACAACTCATGAGATTGTTT AAACTCCCAGACTCTCTTTAATTCTAATCCCATACGATCTGCAGCTATTCTGTTCTGTATAATCCCAAATGCCTGACTTG GTGAAACGTATGATGTTCTTCTGACATCAAAGGAATGTGTGATAATTGAGAGGAAATTACTAATATGCGTACATAATGTA GCAACCTGTAAACAAGTGAATGCCCCACTCTGTCTGTGAGGTTTTTCTGCAGTTTGTTGATGATATTAGTTAATATAGGA TCATCCTGATATTAATAAGATGGACCTTCCCTCCAAATTAGAAAAGATGTCAAGCTAACCTCTTAACGTCCCCTAGACAA TGCATTAGCTGTCCTACTCTCCTTCCCTGGTTCATATAGAATTTCAGTTTTCAAATTTATACCCCAATAACTTGGCTACC AAATTCTTCTGTCAGGAGTTATTATTTGGTTTTAGAGCAAAATATTTTCACTGTTCTTTTTTATAGACACTCAACTTCAA ACTCCCTTCCCTGTTACAGCTTTGCACGCGCAAAAACAGCTGAAATGGTTCTTAACTTCTTATATTTATGAAAATGGAGG AATTTCTACAGTGGACACTGGATAGCTCTAGAAAACAACATGGCACGATTGGGATAGAATCAGGGAGAGAGGGAGAAGAA GGAAGAACAGAGAGAATAGAGAGGGAAACAGGGGAAAAGGAGTATTATTATCATCAACATCATACCAATTACAATGGTGG ACTCTACTTATATAGGCACACTAACTAACTCCCTAAAAGATGTGTAACATGGTGATACAAGAAAATGAAAGACAATGAGA AAATGTGTCTCAACGCCCAGAACTGAGAGCCCTAGCCAATATGGCCAAATTCAATCTGCCCCTCCCCCCTCCTTCCCTTA TTACTAACTTACTCAGTTCCTTTCCTTTGTCTCCCTATATCTCTCCATGTCACTAACTATCCTCATTTCTCTCTTCCAGT TGTCGCTTTCTTCTTCCTAGTATAAACATTCAAGTCTGAGGTCCATGAACTTTAGTCCAGCAATTGGCCCACACTCTTTT CCTTGTATGGGTGCGGACTCGTAACATTCAATCCTTGAAAGCTTGGAATAAGGTTAAACGATGCAATGTATTAGAAAATG TTTGACTTTGACTCATAAAAATAGTGTTTTCTGTTATGCTGACCTTGTTATCCTTCTTGATATGTCTTTTAAGGCTTCAG TGTAATTAGTTTATCGGTGTTCTGTATCTTTTGGATGTATATAGGGTAGAGGGGGTGATGACTTGTCAGCAGAACTGTCT GTAGCTCTTCAACGCAGTCTCTTGGGCGCTAAAAGTGGAGCAGGTCTGTCTTTCTCCTAGTTTCTAGATGATGCTTACTA CCATATGCTATCCCTTCCAAGTTCTTGCCTCTTAATTTTATGTTTATTGCTCTTGTCTCTGCTGTTTATTTTTCAGGTGC TGGTATTGATCTCTCCTCGCTCATTGTTGTTGAAGGGAAAATTTGTTGGGATCTTTATATTGATGGACTTGTTGTTAGCT CAGATGGAAATTTGTTAGACGCACTAGGGGCTGCCATTAAGGTACGGTTTAAAATAAAAACAGAAGAATAAATGCTTGAA CAAGATGACAATAATGGATTCTGGCGATGATGTAATTAGCATTTCAGATGCCATCCTTTGATGATGATGTCAATACCGTT TACTTTTCAAATTTTCCTGTTGGCTCATCATATTTTAGACATGGATCATATTACTAATATGATATTTGGGCTGTTTCAAA AATGTGAACTAAGACCCCCTTGTTTTATTTAATAGCACTTTTGGGAAATGGTTAGAAGTTAACTGAAACTTGAGTTTTCT ATTTTCTAATTGCTTCATTGAGCTGCAACTTTGTTATAGTAAATACTAAAGAGTTAGGTCTTGGTTTTGCTTACTGGTAT GCCAGCTGTCTATAGCTGTTTGTAATCTGTTAGACGTAGTTATAGTTGGTTCTAAACAGATAGTTAGTTACTTAGTCAGT TAGTATTAGTATAGCTTCTCATGTAAGCTGATCACATAGCTATTCTATTCTATATAAGAGCTATTCTCTGTAATCACTAT TCAGATTATTGAATCCCGAATTCTTTCATCTTCTCTTACAAGTTTTCTCTCGTCTTACTCTTCTCTTATCTTAATTAACT AAAAATATCTTAGTTCTTTCTACCTGTTATCTTTGTAATTACCCCAAATAATCCTGCAATCAGTTTAATGGAGGTTGTTG CTCATGGATTTGTCTTTTTACCTAGATGTTGAGAATATAAAGCTATTTTCAGAATGAAATGAAAAGGCTCTAATGCAACT GATGCCTTACATTCTTTTAGGCTGCTTTGAGCAATACAGGTATTCCAAGAGTCCAAGTTGCTGCTGGTGCGTCAGGTGAT GAGAAACCAGAAGTTGAAATAAGTGATGATGAGTTTTTGCAGTTTGACACATCTGGAGTCCCTGTTATAGTTACACTGAC TAAGGTAACTGTCATGAACCAACTGGGGGTCTTTTTTTAGCTTGGTTTTTTCTGGTTGTTCTTGCTCCCTGGTTGGAGTG CTTTTTTTTCATTATTATCCTTTAATAAATTTTCGCTTTAAAAAAAATACTGTCATGAATTAACTAATCCTAAAAACTTG AGGTGTTCGGTGAAGACACGTGAATGATTTTAAATTATATCTGTAACGCGGCCTCTCACATAAGAGCTCATTGCACTTTA AGTGTGGACAATGTACAGTGTGGACTGTGGACATTGCACCTTGTGTTGAAACTCAATTTTTTTATTACAATAGTGAGGGG TAACAAGGATTGAATGTTGTACCACTTAGTCATAGAGACTCTGATACCATTTCATGAATCTACTATCCCAAAAGCTTAAA CTGTTGGGCGAAGACACACGAATGATTTTGTAATACATTTTTATCTGTAACATGCTATCCCGTGTTCTCAGATTGAACTT AGTTTGTGACTTACTGAATTTCATACAATCTGCTTCCTAGGTTGGGAGGCACTCTATCGTGGATGCCACATCAGAAGAGG AATCACAAATGAGCTCTGCTGTTTCCATATCTGTTAATAGGCAAGGTCACATCTGTGGTATCACCAAACGAGGAAGTGTT GGGCTGGATCCAAGTATCGTTCTTGATATGATATCTGTGGCTAAGCATGTGAGCGAGCAGTTAATAAACAAACTGGATTC AGAAATAGCTTCTGCTGAAGCTGAAGATGACTCATGACATAGAACTTAGTCATAACTATGATATGTTGTACACTTCAATT ATTGAGTGGTTTACTTCGACTAGTAATACCTACATTTTCATACTGATGCAGATCTCTTATTGAAAAAGAAAATACACTCA ATGTTTACAGAATACAGAACACTAAAAACACCTCACAAGTCTCCACATAATTACACCAAGAAGCTAAGATCTTTTCTCTC TTTGTTTTCTTACCTCTCGCTGGTTTAGCTTGTATGTCATTCTGCTTCTTTTGTCTGTTAAATATGTTATACTTTGAACC TGGGGTTGTATTATAGATGTGAATAAATACTTATTTTGTTCTGAAATTGATGTTTGGTGTAATGTTTGAAACTGAGAAAG CTAGTTGAACTCTTTATTAGACTTGCTTGGCAGAGCATGTAGTAGCTGGAACTTGTCAGTCAGTACTGCAGTTTAGAGTA GCTCAAAATTCATTTTCTTTTTATCTACGTAAACTGTGAAAGGTTACAGGTTCATTCCAGGCAAATGGGCACCGGGTTTT GTGCTTCAAAGTATGTCTTGCTTACCATGTAGGAGAAATGAATTGTATCTGCTTTAATCATTCTTTTAGTGTAAAATATT TTATATTTTATGCCCCAATTTCAGAACCCAACCATAGGAGCCGTACATTCTACAAAGTTGCTTTAACAATTTTATATCTG ACTAGAAACCATCAATTCTCTCTAGTAAAGTCGATGCCATTTTAAAGATGAATTGTATACAAAATTACGTCTAAATATTT CTTGATACTCAGGCCTATAGTTTTCATTGATCTCCCTCCCCCTGCACATGGGACTATCCTCCTTCTTGCCAACCCTCCTT ATTGGTGCTTATATGAGTTCTTATTTAATGCCCAAACCGGGTGCTTATATGAGACTTCTTATTACATGCCCAAACCACCT AAGATGGCCTTGACTTGTAAAGGGAAAACATGGTCCTATAAAGCTTCCACTTGTTTGAGGGCCAAGGAGGTGTGTCATGA CCCACTTTGTGGATTTAATGTAGGCAACCTTACCTTGCATTTTTTGCAAGAGGCTGATTTTACTATTCGAACATGTGGCT GCAAAGTCACAGCAACATTATTGTTCCTTATATATAGATAAAATGCTTTATTGAACCTAAC
CDS sequence (LotjaGi5g1v0053800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGTTTATCTCTTGGTGAGCGACATTTCATCCAAGGTGGCATTGCTCAGGATCTTCGCTGTGATGGTAGAAAGAG ATTGACTTACCGGCCAATCTATGTTGAAACTGGAGTGATTCCTCAGGCACATGGTTCAGCTAGAATCAGAATGGGTGCTA CAGAGGTCATTGCCAGTGTGAAGGCTGAACTTGGGAAGCCAAGCTTATTACAACCTGACAAAGGGAAAGTCTCTATATAT ATTGATTGTAGTTCGACTGCAGAGCCAGCTTTTGAGGGTAGAGGGGGTGATGACTTGTCAGCAGAACTGTCTGTAGCTCT TCAACGCAGTCTCTTGGGCGCTAAAAGTGGAGCAGGTGCTGGTATTGATCTCTCCTCGCTCATTGTTGTTGAAGGGAAAA TTTGTTGGGATCTTTATATTGATGGACTTGTTGTTAGCTCAGATGGAAATTTGTTAGACGCACTAGGGGCTGCCATTAAG GCTGCTTTGAGCAATACAGGTATTCCAAGAGTCCAAGTTGCTGCTGGTGCGTCAGGTGATGAGAAACCAGAAGTTGAAAT AAGTGATGATGAGTTTTTGCAGTTTGACACATCTGGAGTCCCTGTTATAGTTACACTGACTAAGGTTGGGAGGCACTCTA TCGTGGATGCCACATCAGAAGAGGAATCACAAATGAGCTCTGCTGTTTCCATATCTGTTAATAGGCAAGGTCACATCTGT GGTATCACCAAACGAGGAAGTGTTGGGCTGGATCCAAGTATCGTTCTTGATATGATATCTGTGGCTAAGCATGTGAGCGA GCAGTTAATAAACAAACTGGATTCAGAAATAGCTTCTGCTGAAGCTGAAGATGACTCATGA
Protein sequence (LotjaGi5g1v0053800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKPSLLQPDKGKVSIY IDCSSTAEPAFEGRGGDDLSAELSVALQRSLLGAKSGAGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK AALSNTGIPRVQVAAGASGDEKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHSIVDATSEEESQMSSAVSISVNRQGHIC GITKRGSVGLDPSIVLDMISVAKHVSEQLINKLDSEIASAEAEDDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 2.0E-115 | – | |
| PANTHER | 1 | 281 | 281 | 2.0E-115 | – | |
| Gene3D | 3 | 286 | 284 | 6.3E-83 | ||
| CDD | 4 | 278 | 275 | 5.02057E-124 | – | |
| SUPERFAMILY | 4 | 223 | 220 | 4.4E-44 | ||
| Pfam | 30 | 169 | 140 | 2.9E-27 | ||
| SUPERFAMILY | 196 | 283 | 88 | 4.25E-22 | ||
| Pfam | 200 | 263 | 64 | 1.3E-7 | ||
| Coils | 263 | 283 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0053800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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