Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0054100 |
| Transcript ID | LotjaGi5g1v0054100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Major facilitator superfamily protein; TAIR: AT5G25050.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2; TrEMBL-Plants: tr|I3S4W1|I3S4W1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0054100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9196284..9200372) extracted from Lotus japonicus Gifu genome v1.2.
GAGCTTTCTCATTTCATTTAACCCATTAGTCTAGTTACTTGTGCGATGCACGTGCAGCCTCGTGTGACACACGAGGCCGT ATATCTTACGATTTGCGCGGCACGTGCGGCACACGAGGAAGTATATCTTATGATTTAAAACTAAACAAATTAAATATTTT GGAAGATTGTCAAAATCCCTTCTTTTTTCTTTTGGGATATTTACAGGAGAGAAAAATGACTTCAAAGACCTGCTAAATTC CCATCAGAGAAAAACGACTCTTTGGTCTTTGGAGCATTTTCTTTGAAGCTGATTGTTGAATCTAGTCTTCAATTTTTGGT CTCTGCTTACATCAAAGGCTTGATAATGCAGGAGGAGGAAAATCAAGAAGACCCATTTGTTGAATCTGTGGAGGAAAATG AAAATGAACCCAAAAGAAGGGTTTGGAACTGTCTTTGTATTCCTATCCACTGGTTTAACATGCTTTCAAGGGAAATGCAT TGGAGCTTTGTGTTTGGAGTGGTAGTTGTTTATGGAATAAGCCAAGGAGTGGGTGGAGCTTTTGCCACTGTTGGCACAAA GTATTACATGAAAGATGTTCAGAAGGTGCAGCCATCTGAAGCACAGGTTTATTCAGGAATTACATCAATTCCTTGGATTG TCAAACCTCTTTGGGGTCTTCTCACTGATGTTGTCCCAATTTTTGGATTTCGGAGGCGCCCATATTTCATTTTTGCTGGT ATGTAATGTTTTCTTTGTTCATATCATATGTTCTTGTCTTTTTAAGCTCAAGCATTGTTGCATACATTCAATTCAATTCA TGTTTTATTTAGGTTGGAATTTTAGTAATTTGTGAATAAAAAATTGCAGCTTGATTTTTTTTTTGTACTAGTTACCTCTG GATTATTGCTTTCCTTGATATTTGTTAGTTTAAATAAACTTCAAAGGGTGCAAAACATTTCAATTCTGTTAATTTCAAGT ATTGTATATAGAGTTGAAGCTTGGAAATAATGGAGGGTGAGCATAATTTATTGCACTTAGATGACATTGGGAGATTGCAC TTTGTCAAAATCAGTGCTTCTCATAGTTTTGGTTGCAAAAAGACATGTTTATCTCCAATTAATCGAAATGTAAAAATCTT AACCAGTCTTTTCATTCATAGTACTGATTTTTGTACTTAGAGGTTGCCTTGTTTTTATCCTCATGAATCTGACAACTCTA TGTTATTTTTTATGCTTGTTTTAGTACTATTAACTTTCTTCATCGGAGCCGTAGGAATTTCTTTTAACCTAGAAGGAATA GGATGTACTGGATAAAATGTCATTCTTGAACAAAAGTAGTTTATTTCATCTATTCCATGACCGTAACGGGTTGGGGGGGG GACTTTATACCATGATTTTGAATCAGAAGAAAGATTTCGGATAAGCCAATAAGACTCTAAGCAATACGATAACAGTTTTG GGGATGGTATAGTAGTAAATTTGAATACTGAAAACTTACTTGACGATGTCTCTTAACTGGGCCATTATCTCCTCTTGCTT TCTAGTTCCTGAGACAATATGGAACATTGGTCATAGTAATTCAGTGTACCTGATATAGGTTTCATGCAGACATTATCAAG ATTAGTTCTGTAACACTGCATTAGCATCTGTGGATAAGCTTCTCATTTCAGGAAGCCATCATTGGCCATTCCATTCGGTC TAAAGACACCTTTTTGAGAACAAGGTGCAAAAAGTCAAGTTCTTTGTCTGAGAAGATGATTAAAAACATGTGCAGATGCA CACGAATTCATTTCATTTCTTACTCTGGATAATGAACTACCTATGGGCATTATGATGGTATCATTTGAAGTATTTACTTA GCTCTTGGTATATCTTATCATTGACAAAGTACCAAACTGATGCAATCTCTACGAAGATGGAGTTTTTCTCATACTTTTAT ACAATGTTTTATTAAGCATGAATGAAGTTTGTTTTGCTTCAGACAACCTTAGAAGGAGACAGTTATAATTTTGAGTTTCT TATTAGGGATTACACTGTCCATTATCACAGACCACGGATTAATGCTTGATGCTAGGATTGAAGAAGAGATTTAGAAATTG CTTCACTAACATATTAATCTGAACTATAGACTCTCTTATATGGTTGCAGGTTTTGTAGGGGTGATTTCCATGCTTTTGTT ATCTTTGCATGAGAACCTGCATCTTGTGTTGGCCCTTTTGTCATTAACAGCTGGGAGTGCCGGCGTGGCAATAGCAGATG TCACCATTGATGCCTGTGTGGCACAGAACAGTATCTCTCATCCTTCACTTGCCGCTGACATGCAAAGTTTGTGTGCCTTT AGTTCTTCTGTTGGAGCACTATTAGGATTCTCCATTAGTGGTATCTTTGTTCACCTTATAGGACCTATGGTTAGCCTACA GAAACCTTTTTCTTACAACCTGAAAAGTCTCTTTTTTTAAGTACTTCTTTGATTGGTTTTTAATATGAGAGCTTTTTCCT CATAGGGGGTGTTTGGTTTGATGACTATCCCAGCTGGACTTGTAATTTTGGTTGGTTTTCTTCTCAATGAGCCTCGTATG CACAACTTTTCTTGCAAACAGGTATAACAAACTTTGTTATTTCCACGGTTCTAATACAAGTATAAGCTGATTTTCATGTG TTGACTAGGTTAACCGGAATTGTCTTGATGCTGGCAAGTCTATGTGGAATACATTGAAGAGTGAAGATGTATGGAGGCCT TGCTTATACATGTATTTATCCCTTGCATTGAGTTTAAATATCTTTGAAGGAATGTTTTATTGGGCTACAGACTCAAAGGA TGGACCAGCTTTCTCTCAGGTATCTGTGACATTCTTCTGCTGCTTAAACAAATTATCTTAATATCATGGCAGTAGTTTTA TATTTTAACCAAGTTGAATTAAAAATCTGTATAGCAGATAATGCCAGTAACCTTTGTTGTACATTTTCCTACACAGGAGA GTATTGGCTTCATATTTTCAATTTGTTCAGTGGGCTCCCTTTTAGGTGCAATACTATACCAGTATGCTCTAAAGGATTAC GCGTTCAGAGACGTGCTCTTCTGGACTCAGTTGCTTTACGGTTTGTCAGGGATGTTTGATCTGATTCTAGTCCTGAGATG GAACCTGAAATTTGGTATACCAGATTACTTCTTTGTTGTGGTTGTGGAAAGCATAGCTCAAATGACTAGTAGGCTCAAGT GGATGCCTATGCTTGTACTCAGCACAAAGCTTTGCCCTTCAGGTATTGAAGGCACTTTCTTTGCTCTCCTAATGTCAATT GATAATCTTGGAGTTCTCTCAGCATCATGGGGAGGAGGATTAGTGCTCCACGTTCTGAAGATTACAAGAACACGGTTTGA TAATCTTTGGTTGGCTATTTTGATCCGGAACGTTCTGAGAATCACTCCACTTTGCTTGCTGTTTTTGGTGCCTAGAGCTG ATCCTAACTCTTCTATTCTTCCGAGCGAAATCGCGAATTCAAAGGTTGCTGTTGACACTTCAGAAACCATAGATGTTGAA TTGGTTTCCCTTGTACACAGTGTTGATGGTAAATAGCCAAGCATAAAAGAAATCCTGAGGGATTCTCAATTTCATATACA GGAATTTACCAAGCCAGTGTTTGCTTAAATCTAGCCATTTGTTTGTATACAACTTGAAAAGTAAAGGATGAAAATTAGAT GATTTTGAGAGGACAGGTATAAGTAGCTTACACAATGTGAGAAAGTGAGGGACATTCATTCAAGGTGAGGGATATATATT AATAGGTGTGGTACACATATATGTAATTGGTAGCTGGGATATTGGGCCAATACTATCAGATAGCTCCAAAAGGCCCAAGA GAGAAACACTAAAACCCAAGTGGTTTATTTAAAAATTCTGAGCTAGTTTTGCTGAATTCACTTCTTTTCTAAAATATTTA GATTCCAGTCCTTCATAATTAATTGTAATGAATTTTGAGTACCAAAGATACCCAGAAAGTTAAGCTTTTCTCTCCAATTT GCCTTGTTATTTACTTTAATCCTCTTGCCTCTATTTACTATAGACTTTTCCATTGGTAGATTGATTTTCTTCATACCAGT AAACTAAGC
CDS sequence (LotjaGi5g1v0054100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGAGGAGGAAAATCAAGAAGACCCATTTGTTGAATCTGTGGAGGAAAATGAAAATGAACCCAAAAGAAGGGTTTG GAACTGTCTTTGTATTCCTATCCACTGGTTTAACATGCTTTCAAGGGAAATGCATTGGAGCTTTGTGTTTGGAGTGGTAG TTGTTTATGGAATAAGCCAAGGAGTGGGTGGAGCTTTTGCCACTGTTGGCACAAAGTATTACATGAAAGATGTTCAGAAG GTGCAGCCATCTGAAGCACAGGTTTATTCAGGAATTACATCAATTCCTTGGATTGTCAAACCTCTTTGGGGTCTTCTCAC TGATGTTGTCCCAATTTTTGGATTTCGGAGGCGCCCATATTTCATTTTTGCTGGTTTTGTAGGGGTGATTTCCATGCTTT TGTTATCTTTGCATGAGAACCTGCATCTTGTGTTGGCCCTTTTGTCATTAACAGCTGGGAGTGCCGGCGTGGCAATAGCA GATGTCACCATTGATGCCTGTGTGGCACAGAACAGTATCTCTCATCCTTCACTTGCCGCTGACATGCAAAGTTTGTGTGC CTTTAGTTCTTCTGTTGGAGCACTATTAGGATTCTCCATTAGTGGTATCTTTGTTCACCTTATAGGACCTATGGGGGTGT TTGGTTTGATGACTATCCCAGCTGGACTTGTAATTTTGGTTGGTTTTCTTCTCAATGAGCCTCGTATGCACAACTTTTCT TGCAAACAGGTTAACCGGAATTGTCTTGATGCTGGCAAGTCTATGTGGAATACATTGAAGAGTGAAGATGTATGGAGGCC TTGCTTATACATGTATTTATCCCTTGCATTGAGTTTAAATATCTTTGAAGGAATGTTTTATTGGGCTACAGACTCAAAGG ATGGACCAGCTTTCTCTCAGGAGAGTATTGGCTTCATATTTTCAATTTGTTCAGTGGGCTCCCTTTTAGGTGCAATACTA TACCAGTATGCTCTAAAGGATTACGCGTTCAGAGACGTGCTCTTCTGGACTCAGTTGCTTTACGGTTTGTCAGGGATGTT TGATCTGATTCTAGTCCTGAGATGGAACCTGAAATTTGGTATACCAGATTACTTCTTTGTTGTGGTTGTGGAAAGCATAG CTCAAATGACTAGTAGGCTCAAGTGGATGCCTATGCTTGTACTCAGCACAAAGCTTTGCCCTTCAGGTATTGAAGGCACT TTCTTTGCTCTCCTAATGTCAATTGATAATCTTGGAGTTCTCTCAGCATCATGGGGAGGAGGATTAGTGCTCCACGTTCT GAAGATTACAAGAACACGGTTTGATAATCTTTGGTTGGCTATTTTGATCCGGAACGTTCTGAGAATCACTCCACTTTGCT TGCTGTTTTTGGTGCCTAGAGCTGATCCTAACTCTTCTATTCTTCCGAGCGAAATCGCGAATTCAAAGGTTGCTGTTGAC ACTTCAGAAACCATAGATGTTGAATTGGTTTCCCTTGTACACAGTGTTGATGGTAAATAG
Protein sequence (LotjaGi5g1v0054100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQEEENQEDPFVESVEENENEPKRRVWNCLCIPIHWFNMLSREMHWSFVFGVVVVYGISQGVGGAFATVGTKYYMKDVQK VQPSEAQVYSGITSIPWIVKPLWGLLTDVVPIFGFRRRPYFIFAGFVGVISMLLLSLHENLHLVLALLSLTAGSAGVAIA DVTIDACVAQNSISHPSLAADMQSLCAFSSSVGALLGFSISGIFVHLIGPMGVFGLMTIPAGLVILVGFLLNEPRMHNFS CKQVNRNCLDAGKSMWNTLKSEDVWRPCLYMYLSLALSLNIFEGMFYWATDSKDGPAFSQESIGFIFSICSVGSLLGAIL YQYALKDYAFRDVLFWTQLLYGLSGMFDLILVLRWNLKFGIPDYFFVVVVESIAQMTSRLKWMPMLVLSTKLCPSGIEGT FFALLMSIDNLGVLSASWGGGLVLHVLKITRTRFDNLWLAILIRNVLRITPLCLLFLVPRADPNSSILPSEIANSKVAVD TSETIDVELVSLVHSVDGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 45 | 45 | - | – | |
| PANTHER | 13 | 496 | 484 | 8.5E-262 | – | |
| PANTHER | 13 | 496 | 484 | 8.5E-262 | ||
| Gene3D | 41 | 447 | 407 | 2.1E-23 | – | |
| TIGRFAM | 44 | 464 | 421 | 8.2E-67 | ||
| Phobius | 46 | 70 | 25 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| SUPERFAMILY | 49 | 459 | 411 | 1.57E-25 | ||
| CDD | 58 | 456 | 399 | 1.58944E-148 | – | |
| Pfam | 60 | 232 | 173 | 1.6E-39 | ||
| Phobius | 71 | 119 | 49 | - | – | |
| TMHMM | 120 | 137 | 18 | - | – | |
| Phobius | 120 | 137 | 18 | - | – | |
| Phobius | 138 | 142 | 5 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 143 | 164 | 22 | - | – | |
| Phobius | 165 | 184 | 20 | - | – | |
| TMHMM | 185 | 207 | 23 | - | – | |
| Phobius | 185 | 208 | 24 | - | – | |
| Phobius | 209 | 213 | 5 | - | – | |
| TMHMM | 212 | 231 | 20 | - | – | |
| Phobius | 214 | 232 | 19 | - | – | |
| Phobius | 233 | 268 | 36 | - | – | |
| Pfam | 269 | 461 | 193 | 3.9E-54 | ||
| Phobius | 269 | 290 | 22 | - | – | |
| TMHMM | 269 | 288 | 20 | - | – | |
| Phobius | 291 | 301 | 11 | - | – | |
| Phobius | 302 | 321 | 20 | - | – | |
| TMHMM | 303 | 320 | 18 | - | – | |
| Phobius | 322 | 332 | 11 | - | – | |
| TMHMM | 333 | 355 | 23 | - | – | |
| Phobius | 333 | 355 | 23 | - | – | |
| Phobius | 356 | 360 | 5 | - | – | |
| Phobius | 361 | 380 | 20 | - | – | |
| Phobius | 381 | 400 | 20 | - | – | |
| Phobius | 401 | 425 | 25 | - | – | |
| TMHMM | 402 | 424 | 23 | - | – | |
| Phobius | 426 | 436 | 11 | - | – | |
| Phobius | 437 | 458 | 22 | - | – | |
| TMHMM | 437 | 459 | 23 | - | – | |
| Phobius | 459 | 499 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0054100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…